simtk.org

collect2: error: ld returned 1 exit status
CMakeFiles/F.dir/build.make:101: recipe for target 'F' failed
make[2]: *** [F] Error 1
CMakeFiles/Makefile2:82: recipe for target 'CMakeFiles/F.dir/all' failed
make[1]: *** [CMakeFiles/F.dir/all] Error 2
Makefile:90: recipe for target 'all' failed
make: *** [all] Error 2
Traceback (most recent call last):
File "/workspace/OpenCap/opencap-processing-main/example_kinetics.py", line 166, in <module>
settings = processInputsOpenSimAD(baseDir, dataFolder, session_id, trial_name,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workspace/OpenCap/opencap-processing-main/UtilsDynamicSimulations/OpenSimAD/utilsOpenSimAD.py", line 2321, in processInputsOpenSimAD
generateExternalFunction(baseDir, dataFolder, session_id,
File "/workspace/OpenCap/opencap-processing-main/UtilsDynamicSimulations/OpenSimAD/utilsOpenSimAD.py", line 1544, in generateExternalFunction
buildExternalFunction(
File "/workspace/OpenCap/opencap-processing-main/UtilsDynamicSimulations/OpenSimAD/utilsOpenSimAD.py", line 1795, in buildExternalFunction
shutil.copy2(path_external_filename_foo, CPP_DIR)
File "/opt/conda/envs/opencap-processing/lib/python3.11/shutil.py", line 448, in copy2
copyfile(src, dst, follow_symlinks=follow_symlinks)
File "/opt/conda/envs/opencap-processing/lib/python3.11/shutil.py", line 256, in copyfile
with open(src, 'rb') as fsrc:
^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/workspace/OpenCap/opencap-processing-main/UtilsDynamicSimulations/OpenSimAD/build-ExpressionGraphF/foo.py'

I use the docker, all steps are carried out according to the instructions but it just can't work.

Hi Zhang,

Is your repo up to date?

This was an issue in the past: https://github.com/stanfordnmbl/opencap ... issues/113

Hope this helps,
Matt

Hi Zhang,

Quick question, are you running this on Mac or Windows? If Mac, which OS?

Thanks!
Matt

I am running this project on Linux and have installed libopenblas-base inside the docker container

Hi Zhang,

Are you creating your own docker container? If yes, we haven't tested the compiler within a docker container.

The code should work without a docker container if a python environment is set up as outlined in the README of the Github repository. But if you run into issues with that let us know.

Thanks,
Matt

Well, I managed to get it working on Windows, thanks for your help

Great! Yes Windows should work well. We're looking into the problem on Linux.