pymbar not working!

Analyze data from multiple equilibrium simulations at different thermodynamic states
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Sai Ramadugu
Posts: 1
Joined: Fri Mar 01, 2013 1:54 pm

pymbar not working!

Post by Sai Ramadugu » Mon Mar 04, 2013 12:13 pm

Dear PyMBAR users,

I ran free energy calculations using gromacs-4.5.5 and the dhdl.xvg file consists of time and dVpot/dl values. When I am running achemical-gromacs.py, I get the following error:

"raise ParameterException('Sample covariance sigma_AB^2 = 0 -- cannot compute statistical inefficiency')"

Any suggestions will be helpful.

Thanks
Sai

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