simtk.org

We thank you all for your support of OpenMM Zephyr and hope that it has been valuable in your research. Unfortunately, due to limited resources, we have been unable to continue supporting and maintaining OpenMM Zephyr and are officially deprecating it.

Instead, we invite you to explore the OpenMM Script Builder web application, which provides a similar functionality. With pull-down menus, error checking, and pop-up tips, you can easily generate a script to run your simulation on OpenMM, while simultaneously learning how to create these scripts.

Access the OpenMM Script Builder at http://builder.openmm.org.

To install OpenMM to run your simulation script, visit http://openmm.org.

Are there any support for visualization (preferably vmd) with the Script Builder?

Edit: More specifically live simulation through vmd.

The Script Builder does not currently have this capability, but we have logged your request in the issue tracker (see https://github.com/rmcgibbo/openmm-webbuilder/issues/13).