Welcome to Help

Provide extensible software for building Markov State Models.
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SimTK.org Admin
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Joined: Wed Dec 31, 1969 5:00 pm

Welcome to Help

Post by SimTK.org Admin » Wed Nov 26, 2008 8:57 am

Welcome to Help

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John Skinner
Posts: 1
Joined: Tue Nov 06, 2012 1:09 pm

can't run tutorial. problem with install?

Post by John Skinner » Tue Nov 06, 2012 4:09 pm

Hi,

I'm getting an error when I try to run the first part of the tutorial: ConvertDataToHDF.py -s native.pdb -i XTC

Here's the error:
Traceback (most recent call last):
File "/home/skinnerj/.local/bin/ConvertDataToHDF.py", line 26, in <module>
from msmbuilder import FahProject
File "/home/skinnerj/.local/lib/python2.7/site-packages/msmbuilder/__init__.py", line 56, in <module>
from Serializer import Serializer
File "/home/skinnerj/.local/lib/python2.7/site-packages/msmbuilder/Serializer.py", line 25, in <module>
import tables
ImportError: No module named tables

This happens both on the my local machine and a remote machine. On the remote machine I installed msmbuilder using python setup.py install --prefix=~/.local
On the local machine I installed using sudo python setup.py install

Any help will be greatly appreciated.

Thanks,
Jack

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tan jin
Posts: 1
Joined: Tue Oct 16, 2012 12:09 am

Re: Welcome to Help

Post by tan jin » Tue Nov 13, 2012 12:10 am

Hi,
you should install Pytables,a module of python.

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web design
Posts: 10
Joined: Fri Aug 18, 2017 12:43 pm

Re: Welcome to Help

Post by web design » Fri Aug 18, 2017 1:20 pm

It was amazing

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