TransformAxis help?

[Ashleigh Louise Wiseman]

I have a lower limb model in Opensim 4x (have an earlier 3.3 version too if need to revert). My pelvis has z up rather than y up*. Can I use the TransformAxis function in the matlab API to correct this? If so, can someone please explain how it works? I've looked through the doxygen page but I'm lost at how to get started with the MATLAB API to do this. thanks!

*I've changed the osim script using the TransformAxis function for Pelvis_Ty to make the pelvis behave correctly, but I've still got issues in subsequent analyses (i.e., loading in SCONE) which has been suggested to me might be because my pelvis joint and ground joint have different coordinate systems.

For example in the osim file:
<TransformAxis name="translation2">
<coordinates>Pelvis_Ty</coordinates>
<axis>0 0 1</axis>
<LinearFunction name="function">
<coefficients> 1 0</coefficients>
</LinearFunction>
</TransformAxis>

Any thoughts? Thanks so much in advance