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Issue importing geometry bodies in Matlab
Posted: Mon Jul 20, 2020 8:37 am
by madrobot
I'm currently trying to create my own model using pre-defined geometries. However, I keep getting the following message whenever I try to import the pelvis geometry:
Code: Select all
Error using BGSM (line 269)
Java exception occurred:
java.lang.RuntimeException: ArrayPtrs.get(aName): No object with name r_pelvis
at org.opensim.modeling.opensimSimulationJNI.SetBodies_get__SWIG_1(Native Method)
at org.opensim.modeling.SetBodies.get(SetBodies.java:149)
I have tried calling 'pelvis', 'l_pelvis' and so on, and it seems I am able to import the basic files as per the dynamic walker example, but I don't want to use a sphere to represent the pelvis.
Here is my code:
Code: Select all
pelvis = Body(); % Creates a body
massCenter = Vec3(-0.0707,0.0,0.0); % Create a Vec3 Object with mass center information
inertia = Inertia(0.128, 0.0871, 0.0579, 0, 0, 0); % Create an Inertia object with only principal axes
pelvis.setName('Pelvis'); % Set the name of the body
pelvis.setMass(pelvisMass); % Set the mass of the body
pelvis.setMassCenter(massCenter); % Set the mass center
pelvis.setInertia(inertia); % Set the body's inertia
r_pelvis = model.getBodySet().get('r_pelvis');
pelvis = pelvis.attachGeometry(pelvis);
osimModel.addBody(pelvis);
Alternatively, is there any way of me constructing this geometry using markers? I created a marker file, but when I tried to apply it to an osim model, it rejected it as it said there are too many markers. I don't know how to go around this.
Any help would be much appreciated. Thank you in advance!
Re: Issue importing geometry bodies in Matlab
Posted: Mon Jul 20, 2020 8:51 am
by madrobot
Also, it's worth mentioning that when I try to import the gait2392 or gait2354 model, I get the following message in MATLAB:
Code: Select all
Error using BGSM (line 39)
Java exception occurred:
java.io.IOException: Object: Cannot open file gait2392_simbody.osim. It may not exist or you do not have
permission to read it.
Thrown at Object.cpp:105 in Object().
at org.opensim.modeling.opensimSimulationJNI.new_Model__SWIG_1(Native Method)
at org.opensim.modeling.Model.<init>(Model.java:783)
I don't understand why this is the case, any ideas? Thanks!
Re: Issue importing geometry bodies in Matlab
Posted: Mon Jul 20, 2020 10:19 am
by aymanh
Hello,
Not sure what was your intention in this line
Code: Select all
pelvis = pelvis.attachGeometry(pelvis);
Earlier you defined "pelvis" as a Body and now you are trying to use it as a Geometry object and attaching it to itself. Also the method attachGeometry does not return a Body to assign to 'pelvis'.
I strongly recommend that you study the provided example scripts here
https://simtk-confluence.stanford.edu/d ... ith+Matlab to help you use the API before jumping into model building
As to your second question regarding "can't open file", this has to do with your current working directory in Matlab, please change the working directory in Matlab to the one containing the model files, or use a full path name to the model file if you prefer not to change your working directory.
Hope this helps,
-Ayman
Re: Issue importing geometry bodies in Matlab
Posted: Mon Jul 20, 2020 11:54 am
by madrobot
Hi Ayman,
Thanks for your help - I didn't realise that is what I was doing. I was trying to follow the example as per dynamic walker model, but was trying to edit the model/apply my own parameters and model properties.
With respect to importing the gait2354 file, I've managed to do it by setting the directory to the path to 'OpenSim\4.1\Models\Gait2354_Simbody\gait2354_simbody.osim'. I had originally placed copies of this in the 'code' section, and matlab didn't seem to like that (again, this was likely caused by an error on my part).
Thank you for your help!
