Markers Location in MarkerSet.xml

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mehri makki
Posts: 4
Joined: Thu Apr 21, 2011 9:10 am

Markers Location in MarkerSet.xml

Post by mehri makki » Fri May 27, 2011 9:40 am

Hello everyone,

I use a different set up of marker placement from that is in the gait2392_Scale_MarkerSet.xml (both in number and position)
Now I’m gonna to modify this xml file to be adapted with my marker’s placement. I’m wondering how I can get the marker’slocation (x,y,z)? Is it just by trial and error and approximation in Marker Editor in GUI?
For example:
- <Marker name="R.Acromium">
<location>-0.03 0.44 0.15</location>
<fixed>false</fixed>
<body>torso</body>

R.Acromium is attached to body torso in position (-0.03 0.44 0.15) in respect to torso’s origin. Now about a new marker what is the scenario to find its location?

Thank you.

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Gregory Philips
Posts: 33
Joined: Thu Aug 07, 2008 12:49 am

RE: Markers Location in MarkerSet.xml

Post by Gregory Philips » Fri May 27, 2011 9:47 am

Its easiest to work with it in the GUI. If you create a new marker in the GUI by default its with respect to the ground. Select the body you want to attach it to. And then you can manually move the marker till it ends where you want it to go.

That way you can pu the marker where you want it to go and the system will figure out the corresponding coordinate value.

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Ayman Habib
Posts: 2238
Joined: Fri Apr 01, 2005 12:24 pm

RE: Markers Location in MarkerSet.xml

Post by Ayman Habib » Tue May 31, 2011 10:33 am

Hi Mehri,

Usually there're anatomical markers at some well defined bony landmarks that you can easily place and other markers that are harder to pinpoint on the model.

As Gregory suggested, you'd use the GUI to place the markers approximately where you want them, then when you run the Scale Tool you can "Adjust the model markers" based on a trc file to match the actual location based on a static trial (OpenSim would internally run an IK computation to minimize the sum of squares of marker errors).

Hope this helps,
-Ayman



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