Use case of Umberger2010MuscleMetabolicsProbe
Posted: Wed Jun 20, 2018 3:51 am
Correct me if I am wrong but the use of Umberger2010MuscleMetabolicsProbe is not well documented.
I tried the following workflow (https://simtk-confluence.stanford.edu/d ... Sim/Probes). After running the Analyze tool the probe reporter .sto file didn't contain any result. After some search (https://github.com/opensim-org/opensim-metabolicsprobes) it turned out that the user must also append
the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter structure for each muscle of the model. In case that someone runs into this situation this is the solution.
I tried the following workflow (https://simtk-confluence.stanford.edu/d ... Sim/Probes). After running the Analyze tool the probe reporter .sto file didn't contain any result. After some search (https://github.com/opensim-org/opensim-metabolicsprobes) it turned out that the user must also append
Code: Select all
<Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameterSet>
<objects>
<Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter name="glut_med1_r">
<!--Ratio of slow twitch fibers in the muscle (must be between 0 and 1).-->
<ratio_slow_twitch_fibers>0.55</ratio_slow_twitch_fibers>
<!--An optional flag that allows the user to explicitly specify a muscle mass. If set to true, the <provided_muscle_mass> property must be specified.-->
<use_provided_muscle_mass>false</use_provided_muscle_mass>
</Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter>
...
the Umberger2010MuscleMetabolicsProbe_MetabolicMuscleParameter structure for each muscle of the model. In case that someone runs into this situation this is the solution.