Openmm anisotropic pressure tensor for membrane

The functionality of OpenMM will (eventually) include everything that one would need to run modern molecular simulation.
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manish kesherwani
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Joined: Sat Feb 02, 2013 11:11 am

Openmm anisotropic pressure tensor for membrane

Post by manish kesherwani » Thu Apr 10, 2014 9:09 am

Dear Sir,

I am Manish Kesherwani, I am using Charmm openmm interface for simulating membrane bilayer system. Is there openmm prmc option support anisotropic pressure tensor for pressure control.

I am using Charmm C37b2 version.

Please suggest me

Thanks & Regards
Manish Kesherwani

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Lee-Ping Wang
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Joined: Sun Jun 19, 2011 5:14 pm

Re: Openmm anisotropic pressure tensor for membrane

Post by Lee-Ping Wang » Thu Apr 10, 2014 9:18 am

Hi Manish,

OpenMM has the anisotropic Monte Carlo barostat. I'm not sure whether the CHARMM / OpenMM interface knows how to create this object, but this documentation may be helpful:

https://simtk.org/api_docs/openmm/api6_ ... ostat.html

Thanks,

- Lee-Ping

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Peter Eastman
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Re: Openmm anisotropic pressure tensor for membrane

Post by Peter Eastman » Fri Apr 11, 2014 10:23 am

I believe the CHARMM/OpenMM interface includes a plugin with its own barostat. So far as I know, you just specify pressure options the same way you usually do in CHARMM and it uses that. But I don't know the details.

Peter

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Michael Garrahan
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Joined: Fri Aug 21, 2009 4:32 pm

Re: Openmm anisotropic pressure tensor for membrane

Post by Michael Garrahan » Fri May 02, 2014 8:18 am

CHARMM's OpenMM barostat did not have anisotropic capability in release c37b2. The version under development a year ago worked exactly as Peter said. The CHARMM user forum could give you a better answer about its current status.

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