Fail to launch SimVascular for linux
Fail to launch SimVascular for linux
I fail to launch SimVascular 3.0(2017-8-14) after installation in Ubuntu 16.04 LTS. Ubuntu 16.04 is run with VMware workstation 14 player in windows 10. The terminal reads: Application launch failed...stopping the plugin framework timed out. I have read tutorial and installed lib and MPI.
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Gabriel Maher
- Posts: 32
- Joined: Tue Feb 09, 2016 9:17 am
Re: Fail to launch SimVascular for linux
Hi Yun Shi,
Thanks for letting us know about this.
How are you installing SimVascular? Unfortunately the pre-built binaries do not work on Ubuntu 16, but they do work on Ubuntu 14, so you could switch your virtual machine to Ubuntu 14 and try again.
If you are building from source it should work on Ubuntu 16, in which case you may want to double-check if the compilation process is completing successfully.
Best,
Gabriel
Thanks for letting us know about this.
How are you installing SimVascular? Unfortunately the pre-built binaries do not work on Ubuntu 16, but they do work on Ubuntu 14, so you could switch your virtual machine to Ubuntu 14 and try again.
If you are building from source it should work on Ubuntu 16, in which case you may want to double-check if the compilation process is completing successfully.
Best,
Gabriel
Re: Fail to launch SimVascular for linux
Thank you, Gabriel! After I run "sudo apt-get install libgstreamer-plugins-base0.10-dev" again, SimVascular is successfully installed in Ubuntu 16.04. That may be due to changing host server from United States to China in Ubuntu.
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Hongzhi Lan
- Posts: 125
- Joined: Mon Aug 04, 2014 3:55 pm
Re: Fail to launch SimVascular for linux
Hi Yun,
Just follow the instructions at
http://simvascular.github.io/docsInstal ... ationLinux
Normally you only need to execute the two lines:
sudo apt-get install libgstreamer0.10-0
sudo apt-get install libgstreamer-plugins-base0.10-dev
Best,
Hongzhi
Just follow the instructions at
http://simvascular.github.io/docsInstal ... ationLinux
Normally you only need to execute the two lines:
sudo apt-get install libgstreamer0.10-0
sudo apt-get install libgstreamer-plugins-base0.10-dev
Best,
Hongzhi
Re: Fail to launch SimVascular for linux
Thank you, Hongzhi! SimVascular is successfully installed in Ubuntu 16.04 as I follow your instruction.
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Amirtaha Taebi
- Posts: 35
- Joined: Fri Oct 12, 2018 3:54 pm
Re: Fail to launch SimVascular for linux
Hi SimVascularers,
I try to install and run SimVascular on Ubuntu via command line. After installation, I have a problem to launch the software. The information is listed below. Could you give me some advice how to solve the problem. Thank you so much for your great help.
OS: Linux 4.18.0-16-generic #17-Ubuntu SMP Fri Feb 8 00:06:57 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Installation by .deb
> sudo dpkg -i libgstreamer0.10-0_0.10.36-1.5ubuntu1_amd64.deb
> sudo dpkg -i libgstreamer-plugins-base0.10-0_0.10.36-2_amd64.deb
> sudo dpkg -i SimVascular-ubuntu-x64-2019.03.17.deb
Launch by
> /usr/local/bin/simvascular -> /usr/local/sv/simvascular/2019-03-17/simvascular
and the message while launching
I try to install and run SimVascular on Ubuntu via command line. After installation, I have a problem to launch the software. The information is listed below. Could you give me some advice how to solve the problem. Thank you so much for your great help.
OS: Linux 4.18.0-16-generic #17-Ubuntu SMP Fri Feb 8 00:06:57 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Installation by .deb
> sudo dpkg -i libgstreamer0.10-0_0.10.36-1.5ubuntu1_amd64.deb
> sudo dpkg -i libgstreamer-plugins-base0.10-0_0.10.36-2_amd64.deb
> sudo dpkg -i SimVascular-ubuntu-x64-2019.03.17.deb
Launch by
> /usr/local/bin/simvascular -> /usr/local/sv/simvascular/2019-03-17/simvascular
and the message while launching
Code: Select all
No plugins installed for current SimVascular installed version.
!Thu Mar 28 12:47:58 2019
0.354! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.354! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkCESTIO.so failed.
!0.361! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.361! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkMultilabelIO.so failed.
!0.431! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.431! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkDICOMReaderServices.so failed.
!0.433! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.433! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkDicomRTIO.so failed.
Note: Not using the provisioning file. To use a provisioning file, provide --use-pro flag
Reading custom plugins SV_CUSTOM_PLUGINS environment variable...
Reading plugin paths SV_PLUGIN_PATH environment variable...
Adding to plugin search path (/usr/local/sv/simvascular/2019-03-17/lib/plugins)
Adding to plugin search path (/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins)
Checking all plugin paths...
plugin (org_commontk_configadmin)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_commontk_configadmin.so]
plugin (org_commontk_eventadmin)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_commontk_eventadmin.so]
plugin (org_blueberry_core_runtime)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_core_runtime.so]
plugin (org_blueberry_core_expressions)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_core_expressions.so]
plugin (org_blueberry_core_commands)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_core_commands.so]
plugin (org_blueberry_ui_qt)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_ui_qt.so]
plugin (org_blueberry_ui_qt_help)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_ui_qt_help.so]
plugin (org_blueberry_ui_qt_log)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_ui_qt_log.so]
plugin (org_mitk_core_services)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_core_services.so]
plugin (org_mitk_gui_common)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_common.so]
plugin (org_mitk_planarfigure)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_planarfigure.so]
plugin (org_mitk_core_ext)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_core_ext.so]
plugin (org_mitk_gui_qt_application)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_application.so]
plugin (org_mitk_gui_qt_ext)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_ext.so]
plugin (org_mitk_gui_qt_extapplication)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_extapplication.so]
plugin (org_mitk_gui_qt_common)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_common.so]
plugin (org_mitk_gui_qt_stdmultiwidgeteditor)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_stdmultiwidgeteditor.so]
plugin (org_mitk_gui_qt_common_legacy)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_common_legacy.so]
plugin (org_mitk_gui_qt_datamanager)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_datamanager.so]
plugin (org_mitk_gui_qt_properties)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_properties.so]
plugin (org_mitk_gui_qt_basicimageprocessing)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_basicimageprocessing.so]
plugin (org_mitk_gui_qt_dicom)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so]
plugin (org_mitk_gui_qt_geometrytools)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_geometrytools.so]
plugin (org_mitk_gui_qt_imagenavigator)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_imagenavigator.so]
plugin (org_mitk_gui_qt_measurementtoolbox)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_measurementtoolbox.so]
plugin (org_mitk_gui_qt_python)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_python.so]
plugin (org_mitk_gui_qt_segmentation)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so]
plugin (org_mitk_gui_qt_volumevisualization)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_volumevisualization.so]
plugin (org_sv_gui_qt_application)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_application.so]
plugin (org_sv_projectdatanodes)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_projectdatanodes.so]
plugin (org_sv_gui_qt_datamanager)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_datamanager.so]
plugin (org_sv_gui_qt_projectmanager)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_projectmanager.so]
plugin (org_sv_gui_qt_pathplanning)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_pathplanning.so]
plugin (org_sv_gui_qt_modeling)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_modeling.so]
plugin (org_sv_gui_qt_segmentation)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_segmentation.so]
plugin (org_sv_gui_qt_meshing)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_meshing.so]
plugin (org_sv_gui_qt_simulation)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_simulation.so]
plugin (org_sv_gui_qt_imageprocessing)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_imageprocessing.so]
plugin (org_sv_gui_qt_svfsi)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_svfsi.so]
plugin (org_sv_pythondatanodes)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_pythondatanodes.so]
!0.635! WARNING: Failed to install plugin QUrl("file:///usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so") : ctkPluginException: Failed to install plugin
at 0x7fb23ac486b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac64e57: ctkException::ctkException(QString const&, ctkException const&) + 0x47 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac6564d: ctkRuntimeException::ctkRuntimeException(QString const&, ctkException const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb250aee1f4: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&, ctkException const&) + 0x24 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b29c5c: ??? + 0x50b29c5c in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250aebab2: ctkPluginContext::installPlugin(QUrl const&, QIODevice*) + 0x32 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b087fb: ??? + 0x50b087fb in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b06e41: ctkPluginFrameworkLauncher::startup(QRunnable*) + 0x251 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b07379: ctkPluginFrameworkLauncher::run(QRunnable*, QVariant const&) + 0x49 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250691d0f: mitk::BaseApplication::main(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) + 0x15f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libMitkAppUtil.so
at 0x7fb24e60f29f: Poco::Util::Application::run() + 0x2f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libPocoUtil.so.31
at 0x7fb25d79f312: sv4guiMain(int, char**, bool, bool) + 0x10a2 in /usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_application.so
at 0x40368c: ??? + 0x40368c in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
at 0x7fb25335809b: __libc_start_main + 0xeb in /lib/x86_64-linux-gnu/libc.so.6
at 0x403c59: ??? + 0x403c59 in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
Caused by: ctkPluginException: The plugin "/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so" could not be loaded: Cannot load library /usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so: (libMitkDicomRTIO.so: cannot open shared object file: No such file or directory)
at 0x7fb23ac486b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac64d8e: ctkException::ctkException(QString const&) + 0x3e in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac655fd: ctkRuntimeException::ctkRuntimeException(QString const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb250aee191: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&) + 0x21 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b3311b: ??? + 0x50b3311b in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b34df1: ??? + 0x50b34df1 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b3502f: ??? + 0x50b3502f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b295b8: ??? + 0x50b295b8 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
... 10 more
!0.643! WARNING: Failed to install plugin QUrl("file:///usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so") : ctkPluginException: Failed to install plugin
at 0x7fb23ac486b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac64e57: ctkException::ctkException(QString const&, ctkException const&) + 0x47 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac6564d: ctkRuntimeException::ctkRuntimeException(QString const&, ctkException const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb250aee1f4: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&, ctkException const&) + 0x24 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b29c5c: ??? + 0x50b29c5c in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250aebab2: ctkPluginContext::installPlugin(QUrl const&, QIODevice*) + 0x32 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b087fb: ??? + 0x50b087fb in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b06e41: ctkPluginFrameworkLauncher::startup(QRunnable*) + 0x251 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b07379: ctkPluginFrameworkLauncher::run(QRunnable*, QVariant const&) + 0x49 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250691d0f: mitk::BaseApplication::main(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) + 0x15f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libMitkAppUtil.so
at 0x7fb24e60f29f: Poco::Util::Application::run() + 0x2f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libPocoUtil.so.31
at 0x7fb25d79f312: sv4guiMain(int, char**, bool, bool) + 0x10a2 in /usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_application.so
at 0x40368c: ??? + 0x40368c in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
at 0x7fb25335809b: __libc_start_main + 0xeb in /lib/x86_64-linux-gnu/libc.so.6
at 0x403c59: ??? + 0x403c59 in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
Caused by: ctkPluginException: The plugin "/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so" could not be loaded: Cannot load library /usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so: (libicuuc.so.55: cannot open shared object file: No such file or directory)
at 0x7fb23ac486b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac64d8e: ctkException::ctkException(QString const&) + 0x3e in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb23ac655fd: ctkRuntimeException::ctkRuntimeException(QString const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fb250aee191: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&) + 0x21 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b3311b: ??? + 0x50b3311b in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b34df1: ??? + 0x50b34df1 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b3502f: ??? + 0x50b3502f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fb250b295b8: ??? + 0x50b295b8 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
... 10 more
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.LogLevel=2
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:215
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.CacheSize=30
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:217
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.ThreadPoolSize=20
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:219
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.Timeout=5000
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:221
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.RequireTopic=true
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:223
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.LogLevel=2
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:215
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.CacheSize=30
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:217
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.ThreadPoolSize=20
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:219
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.Timeout=5000
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:221
Thu Mar 28 12:47:58 2019 Debug: org.commontk.eventadmin.RequireTopic=true
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:223
[0.680] Logfile: /home/ccjliu/.local/share/SimVascular/SimVascularApplication_525109161/data/9/mitk-0.log
[0.712] OpenCASCADE module loaded.
activator.start
[0.831] [BlueBerry] LOG: Warning: Detected recursive attempt by part org.sv.views.datamanager to create itself (this is probably, but not necessarily, a bug)
!0.843! WARNING: QOpenGLWidget: Failed to create context
!0.848! WARNING: QOpenGLWidget: Failed to create context
!0.855! WARNING: QOpenGLWidget: Failed to create context
!0.862! WARNING: QOpenGLWidget: Failed to create context
!0.868! WARNING: QOpenGLWidget: Failed to create context
!0.874! WARNING: QOpenGLWidget: Failed to create context
!0.881! WARNING: QOpenGLWidget: Failed to create context
!0.888! WARNING: QOpenGLWidget: Failed to create context
!0.919! WARNING: QOpenGLWidget: Failed to create context
!0.924! WARNING: QOpenGLWidget: Failed to create context
!0.931! WARNING: QOpenGLWidget: Failed to create context
!0.936! WARNING: QOpenGLWidget: Failed to create context
!1.047! WARNING: WebEngineContext used before QtWebEngine::initialize() or OpenGL context creation failed.
!1.102! WARNING: QObject::connect: No such signal QWebEngineView::linkClicked(const QUrl& )
!1.117! WARNING: QOpenGLWidget: Failed to create context
!1.121! WARNING: QOpenGLWidget: Failed to create context
!1.127! WARNING: QOpenGLWidget: Failed to create context
!1.134! WARNING: QOpenGLWidget: Failed to create context
!1.139! WARNING: QOpenGLWidget: Failed to create context
!1.143! WARNING: QOpenGLWidget: Failed to create context
!1.148! WARNING: QOpenGLWidget: Failed to create context
[1.154] [BlueBerry] BlueBerry Workbench ready
!1.159! WARNING: QOpenGLWidget: Failed to create context
!1.165! WARNING: QOpenGLWidget: Failed to create context
!1.170! WARNING: QOpenGLWidget: Failed to create context
!1.177! WARNING: QOpenGLWidget: Failed to create context
!1.187! WARNING: composeAndFlush: makeCurrent() failed
!1.190! WARNING: composeAndFlush: makeCurrent() failed
getrlimit(RLIMIT_NOFILE) failed
#1.197# ERROR: Uncaught TypeError: Cannot read property 'appendChild' of null
!1.213! WARNING: composeAndFlush: makeCurrent() failed
!1.215! WARNING: composeAndFlush: makeCurrent() failed
!1.220! WARNING: composeAndFlush: makeCurrent() failed
!1.221! WARNING: composeAndFlush: makeCurrent() failed
[1.223] [BlueBerry] Closing workbench...
Last edited by Amirtaha Taebi on Thu Mar 28, 2019 4:20 pm, edited 1 time in total.
-
David Parker
- Posts: 1736
- Joined: Tue Aug 23, 2005 2:43 pm
Re: Fail to launch SimVascular for linux
Hi Amirtaha,
It seems that you don't have OpenGL installed. Try the following:
sudo apt-get install libgl1-mesa-dri libgl1-mesa-glx
Cheers,
Dave
It seems that you don't have OpenGL installed. Try the following:
sudo apt-get install libgl1-mesa-dri libgl1-mesa-glx
Cheers,
Dave
-
Amirtaha Taebi
- Posts: 35
- Joined: Fri Oct 12, 2018 3:54 pm
Re: Fail to launch SimVascular for linux
Hi David,
Thanks for your advice. I installed the OpenGL. I also installed the svSolver and svFSI. I still get a similar error which you can see below. However, when I run the software, GUI pops up. I tried to run one of the projects that I had. But it couldn't create all the files needed for the simulation, and therefore I couldn't run the simulation. Can you please advise on this?
Thank you!
Amirtaha
Thanks for your advice. I installed the OpenGL. I also installed the svSolver and svFSI. I still get a similar error which you can see below. However, when I run the software, GUI pops up. I tried to run one of the projects that I had. But it couldn't create all the files needed for the simulation, and therefore I couldn't run the simulation. Can you please advise on this?
Thank you!
Amirtaha
Code: Select all
simvascular
No plugins installed for current SimVascular installed version.
!Thu Mar 28 15:55:31 2019
0.401! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.401! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkCESTIO.so failed.
!0.409! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.409! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkMultilabelIO.so failed.
!0.480! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.480! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkDICOMReaderServices.so failed.
!0.482! WARNING: In load_impl at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.55: cannot open shared object file: No such file or directory
!0.482! WARNING: In AutoLoadModulesFromPath at /usr/local/sv/ext/2019.02/release/gl2/src/mitk-2018.04.0/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /usr/local/sv/simvascular/2019-03-17/svExternals/lib/MitkCore/libMitkDicomRTIO.so failed.
Note: Not using the provisioning file. To use a provisioning file, provide --use-pro flag
Reading custom plugins SV_CUSTOM_PLUGINS environment variable...
Reading plugin paths SV_PLUGIN_PATH environment variable...
Adding to plugin search path (/usr/local/sv/simvascular/2019-03-17/lib/plugins)
Adding to plugin search path (/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins)
Checking all plugin paths...
plugin (org_commontk_configadmin)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_commontk_configadmin.so]
plugin (org_commontk_eventadmin)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_commontk_eventadmin.so]
plugin (org_blueberry_core_runtime)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_core_runtime.so]
plugin (org_blueberry_core_expressions)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_core_expressions.so]
plugin (org_blueberry_core_commands)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_core_commands.so]
plugin (org_blueberry_ui_qt)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_ui_qt.so]
plugin (org_blueberry_ui_qt_help)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_ui_qt_help.so]
plugin (org_blueberry_ui_qt_log)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_blueberry_ui_qt_log.so]
plugin (org_mitk_core_services)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_core_services.so]
plugin (org_mitk_gui_common)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_common.so]
plugin (org_mitk_planarfigure)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_planarfigure.so]
plugin (org_mitk_core_ext)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_core_ext.so]
plugin (org_mitk_gui_qt_application)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_application.so]
plugin (org_mitk_gui_qt_ext)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_ext.so]
plugin (org_mitk_gui_qt_extapplication)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_extapplication.so]
plugin (org_mitk_gui_qt_common)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_common.so]
plugin (org_mitk_gui_qt_stdmultiwidgeteditor)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_stdmultiwidgeteditor.so]
plugin (org_mitk_gui_qt_common_legacy)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_common_legacy.so]
plugin (org_mitk_gui_qt_datamanager)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_datamanager.so]
plugin (org_mitk_gui_qt_properties)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_properties.so]
plugin (org_mitk_gui_qt_basicimageprocessing)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_basicimageprocessing.so]
plugin (org_mitk_gui_qt_dicom)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so]
plugin (org_mitk_gui_qt_geometrytools)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_geometrytools.so]
plugin (org_mitk_gui_qt_imagenavigator)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_imagenavigator.so]
plugin (org_mitk_gui_qt_measurementtoolbox)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_measurementtoolbox.so]
plugin (org_mitk_gui_qt_python)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_python.so]
plugin (org_mitk_gui_qt_segmentation)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so]
plugin (org_mitk_gui_qt_volumevisualization)
resolves to [/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_volumevisualization.so]
plugin (org_sv_gui_qt_application)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_application.so]
plugin (org_sv_projectdatanodes)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_projectdatanodes.so]
plugin (org_sv_gui_qt_datamanager)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_datamanager.so]
plugin (org_sv_gui_qt_projectmanager)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_projectmanager.so]
plugin (org_sv_gui_qt_pathplanning)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_pathplanning.so]
plugin (org_sv_gui_qt_modeling)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_modeling.so]
plugin (org_sv_gui_qt_segmentation)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_segmentation.so]
plugin (org_sv_gui_qt_meshing)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_meshing.so]
plugin (org_sv_gui_qt_simulation)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_simulation.so]
plugin (org_sv_gui_qt_imageprocessing)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_imageprocessing.so]
plugin (org_sv_gui_qt_svfsi)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_svfsi.so]
plugin (org_sv_pythondatanodes)
resolves to [/usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_pythondatanodes.so]
!0.686! WARNING: Failed to install plugin QUrl("file:///usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so") : ctkPluginException: Failed to install plugin
at 0x7fe4597736b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe45978fe57: ctkException::ctkException(QString const&, ctkException const&) + 0x47 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe45979064d: ctkRuntimeException::ctkRuntimeException(QString const&, ctkException const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe46f6191f4: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&, ctkException const&) + 0x24 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f654c5c: ??? + 0x6f654c5c in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f616ab2: ctkPluginContext::installPlugin(QUrl const&, QIODevice*) + 0x32 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f6337fb: ??? + 0x6f6337fb in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f631e41: ctkPluginFrameworkLauncher::startup(QRunnable*) + 0x251 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f632379: ctkPluginFrameworkLauncher::run(QRunnable*, QVariant const&) + 0x49 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f1bcd0f: mitk::BaseApplication::main(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) + 0x15f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libMitkAppUtil.so
at 0x7fe46d13a29f: Poco::Util::Application::run() + 0x2f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libPocoUtil.so.31
at 0x7fe47c2ca312: sv4guiMain(int, char**, bool, bool) + 0x10a2 in /usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_application.so
at 0x40368c: ??? + 0x40368c in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
at 0x7fe471e8309b: __libc_start_main + 0xeb in /lib/x86_64-linux-gnu/libc.so.6
at 0x403c59: ??? + 0x403c59 in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
Caused by: ctkPluginException: The plugin "/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so" could not be loaded: Cannot load library /usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_dicom.so: (libMitkDicomRTIO.so: cannot open shared object file: No such file or directory)
at 0x7fe4597736b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe45978fd8e: ctkException::ctkException(QString const&) + 0x3e in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe4597905fd: ctkRuntimeException::ctkRuntimeException(QString const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe46f619191: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&) + 0x21 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f65e11b: ??? + 0x6f65e11b in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f65fdf1: ??? + 0x6f65fdf1 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f66002f: ??? + 0x6f66002f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f6545b8: ??? + 0x6f6545b8 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
... 10 more
!0.695! WARNING: Failed to install plugin QUrl("file:///usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so") : ctkPluginException: Failed to install plugin
at 0x7fe4597736b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe45978fe57: ctkException::ctkException(QString const&, ctkException const&) + 0x47 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe45979064d: ctkRuntimeException::ctkRuntimeException(QString const&, ctkException const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe46f6191f4: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&, ctkException const&) + 0x24 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f654c5c: ??? + 0x6f654c5c in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f616ab2: ctkPluginContext::installPlugin(QUrl const&, QIODevice*) + 0x32 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f6337fb: ??? + 0x6f6337fb in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f631e41: ctkPluginFrameworkLauncher::startup(QRunnable*) + 0x251 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f632379: ctkPluginFrameworkLauncher::run(QRunnable*, QVariant const&) + 0x49 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f1bcd0f: mitk::BaseApplication::main(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) + 0x15f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libMitkAppUtil.so
at 0x7fe46d13a29f: Poco::Util::Application::run() + 0x2f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libPocoUtil.so.31
at 0x7fe47c2ca312: sv4guiMain(int, char**, bool, bool) + 0x10a2 in /usr/local/sv/simvascular/2019-03-17/lib/plugins/liborg_sv_gui_qt_application.so
at 0x40368c: ??? + 0x40368c in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
at 0x7fe471e8309b: __libc_start_main + 0xeb in /lib/x86_64-linux-gnu/libc.so.6
at 0x403c59: ??? + 0x403c59 in /usr/local/sv/simvascular/2019-03-17/bin/simvascular
Caused by: ctkPluginException: The plugin "/usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so" could not be loaded: Cannot load library /usr/local/sv/simvascular/2019-03-17/svExternals/lib/plugins/liborg_mitk_gui_qt_segmentation.so: (libicuuc.so.55: cannot open shared object file: No such file or directory)
at 0x7fe4597736b6: ctkBackTrace::ctkBackTrace(unsigned long) + 0xa6 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe45978fd8e: ctkException::ctkException(QString const&) + 0x3e in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe4597905fd: ctkRuntimeException::ctkRuntimeException(QString const&) + 0x1d in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKCore.so.0.1
at 0x7fe46f619191: ctkPluginException::ctkPluginException(QString const&, ctkPluginException::Type const&) + 0x21 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f65e11b: ??? + 0x6f65e11b in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f65fdf1: ??? + 0x6f65fdf1 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f66002f: ??? + 0x6f66002f in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
at 0x7fe46f6545b8: ??? + 0x6f6545b8 in /usr/local/sv/simvascular/2019-03-17/svExternals/lib/libCTKPluginFramework.so.0.1
... 10 more
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.LogLevel=2
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:215
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.CacheSize=30
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:217
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.ThreadPoolSize=20
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:219
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.Timeout=5000
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:221
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.RequireTopic=true
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:223
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.LogLevel=2
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:215
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.CacheSize=30
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:217
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.ThreadPoolSize=20
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:219
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.Timeout=5000
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:221
Thu Mar 28 15:55:32 2019 Debug: org.commontk.eventadmin.RequireTopic=true
in startOrUpdate, /usr/local/sv/ext/2019.02/release/gl2/build/gnu/5.4/x64/mitk-2018.04.0/ep/src/CTK/Plugins/org.commontk.eventadmin/ctkEAConfiguration.cpp:223
[0.733] Logfile: /home/ccjliu/.local/share/SimVascular/SimVascularApplication_525109161/data/9/mitk-0.log
[0.768] OpenCASCADE module loaded.
activator.start
[0.892] [BlueBerry] LOG: Warning: Detected recursive attempt by part org.sv.views.datamanager to create itself (this is probably, but not necessarily, a bug)
!0.905! WARNING: QOpenGLWidget: Failed to create context
!0.909! WARNING: QOpenGLWidget: Failed to create context
!0.915! WARNING: QOpenGLWidget: Failed to create context
!0.923! WARNING: QOpenGLWidget: Failed to create context
!0.929! WARNING: QOpenGLWidget: Failed to create context
!0.935! WARNING: QOpenGLWidget: Failed to create context
!0.941! WARNING: QOpenGLWidget: Failed to create context
!0.948! WARNING: QOpenGLWidget: Failed to create context
!0.981! WARNING: QOpenGLWidget: Failed to create context
!0.985! WARNING: QOpenGLWidget: Failed to create context
!0.991! WARNING: QOpenGLWidget: Failed to create context
!0.997! WARNING: QOpenGLWidget: Failed to create context
!1.108! WARNING: WebEngineContext used before QtWebEngine::initialize() or OpenGL context creation failed.
!1.163! WARNING: QObject::connect: No such signal QWebEngineView::linkClicked(const QUrl& )-
Amirtaha Taebi
- Posts: 35
- Joined: Fri Oct 12, 2018 3:54 pm
Re: Fail to launch SimVascular for linux
One more thing, I just tried to reinstall the
sudo apt-get install libgstreamer-plugins-base0.10-dev
and I got the following:
Thanks,
Amirtaha
sudo apt-get install libgstreamer-plugins-base0.10-dev
and I got the following:
Can this be the reason?sudo apt-get install libgstreamer-plugins-base0.10-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package libgstreamer-plugins-base0.10-dev
E: Couldn't find any package by glob 'libgstreamer-plugins-base0.10-dev'
E: Couldn't find any package by regex 'libgstreamer-plugins-base0.10-dev'
Thanks,
Amirtaha
-
David Parker
- Posts: 1736
- Joined: Tue Aug 23, 2005 2:43 pm
Re: Fail to launch SimVascular for linux
Hi Amirtaha,
So you can now bring up the GUI and can see images and models, and rotate them? Good!
Creating and running a solver job from the GUI is a bit fragile right now, several things can go wrong but no useful information is returned to the user. I hope that I have improved on that for the next release.
There are a few things you can do:
1) Set the solver paths in the Preferences->SimVascular Simulation panel under the Window menu in the toolbar.
2) You need to have gfortran installed. Install it using sudo apt-get install gfortran.
3) You need to MPI installed. Install it using sudo apt-get install mpich.
Give that a try. If creating solver files still fails then send me the contents of the Details from the popup window that appears after you select to create files.
Cheers,
Dave
So you can now bring up the GUI and can see images and models, and rotate them? Good!
Creating and running a solver job from the GUI is a bit fragile right now, several things can go wrong but no useful information is returned to the user. I hope that I have improved on that for the next release.
There are a few things you can do:
1) Set the solver paths in the Preferences->SimVascular Simulation panel under the Window menu in the toolbar.
2) You need to have gfortran installed. Install it using sudo apt-get install gfortran.
3) You need to MPI installed. Install it using sudo apt-get install mpich.
Give that a try. If creating solver files still fails then send me the contents of the Details from the popup window that appears after you select to create files.
Cheers,
Dave