SegmentationStep Plugin

Provides an easy-to-use application for visualising imaging data, segmenting images, creating volumetric meshes, and exporting OpenSim and FE models.
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David Britzman
Posts: 5
Joined: Tue Oct 08, 2013 2:11 pm

SegmentationStep Plugin

Post by David Britzman » Mon Oct 15, 2018 5:14 am

Hi

I'm trying to get the segmentation step plugin working, but seem to be running into some problems installing it into the MAPClient. As far as I can work out it seem to be that OpenCMISS-Zinc is not available. Just wondering if youve run into this problem before? Ive attached a screenshot of the error below:

error.png
error.png (65.92 KiB) Viewed 434 times

Thanks,

David

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Bryce Killen
Posts: 104
Joined: Mon Nov 24, 2014 7:12 pm

Re: SegmentationStep Plugin

Post by Bryce Killen » Mon Oct 15, 2018 2:55 pm

Hi David,

Personally I have never use the plugin you are referring to. You are correct in saying it is an OpenCMISS problem, the problem is that i'm assuming you don't have OpenCmiss installed with python bindings. Now I have never personally installed CMISS with or without the bindings so i'm afraid I cannot provide any concrete step by step instructions to help with this installation.

I did have a look around the ABI website and found some documentation regarding CMISS installation etc which is attached below.

Tutorial for using python in OpenCMISS
https://abi-software-book.readthedocs.i ... ython.html

Info about OpenCMISS
http://cmiss.bioeng.auckland.ac.nz/Open ... ation.html

Install instruction for OpenCMISS
http://cmiss.bioeng.auckland.ac.nz/Open ... ation.html

Hopefully this information helps, good luck with installation of OpenCMISS if you go down this track. Let me know how it goes.

Cheers
Bryce

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