Setting Up Mimic Measure

SCONE is a software tool for predictive simulations of biomechanical movement. It uses OpenSim for modeling and simulation, and performs optimization using various control strategies, including feed-forward control, proprioceptic feedback control, and bal
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Eliezer Gill
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Setting Up Mimic Measure

Post by Eliezer Gill » Tue Mar 19, 2024 11:00 am

Is there an example I can follow to set up Mimic Measure? I set up an excel spreadsheet with my data, but I don't know how to get it into SCONE. Thanks for the help.

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Thomas Geijtenbeek
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Re: Setting Up Mimic Measure

Post by Thomas Geijtenbeek » Wed Mar 20, 2024 12:44 am

Please see the documentation, and make sure the data is in the .sto format:

https://scone.software/doku.php?id=ref:mimic_measure

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Eliezer Gill
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Re: Setting Up Mimic Measure

Post by Eliezer Gill » Sat Mar 23, 2024 4:15 pm

I set it up like the example, but SCONE is still not recognizing it. Did I set it up incorrectly?
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Thomas Geijtenbeek
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Re: Setting Up Mimic Measure

Post by Thomas Geijtenbeek » Mon Mar 25, 2024 6:36 am

The channels in the .sto file need to match the model coordinates. You can export a .sto file from SCONE with only state data checked to see an example of what that would like.

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Eliezer Gill
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Re: Setting Up Mimic Measure

Post by Eliezer Gill » Sat Mar 30, 2024 2:53 pm

Are these the coordinates you are referencing? Is MimicMeasure not able to track center of mass position data? Thank you for your help.
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Thomas Geijtenbeek
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Re: Setting Up Mimic Measure

Post by Thomas Geijtenbeek » Tue Apr 02, 2024 5:29 am

Yes. You can create a .sto file from SCONE with only state data checked to see an example.

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Eliezer Gill
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Re: Setting Up Mimic Measure

Post by Eliezer Gill » Wed May 08, 2024 2:09 pm

Is it possible to export coordinate data over a period of time with appropriate time stamps?

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Thomas Geijtenbeek
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Re: Setting Up Mimic Measure

Post by Thomas Geijtenbeek » Mon May 13, 2024 4:04 am

You can currently only export a single frame of coordinate data, or export a whole motion as an .sto.

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Ziang Liu
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Re: Setting Up Mimic Measure

Post by Ziang Liu » Wed May 15, 2024 2:08 pm

Hi Thomas,

Sorry to jump in here, and thank you for the great software.

I'm hoping to use SCONE to optimize muscle activation to track a reference motion(stored as a .sto motion file that can be loaded in OpenSim as a motion) over a period of time as closely as possible subject to muscle parameter/ligament constraints. Is this achievable with MimicMeasure? I have tried using OpenSim Moco but was having convergence issues. Thank you.

Best,
Ziang

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Thomas Geijtenbeek
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Re: Setting Up Mimic Measure

Post by Thomas Geijtenbeek » Thu May 16, 2024 12:47 am

Direct collocation (Moco) is definitely better suited for motion tracking than shooting methods (SCONE), so you are unlikely to get better results with the MimicMeasure.

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