I am experiencing an issue in Creating a data file for the simulation.
Error as follows:
Code: Select all
LINE 0000: mesh_and_adjncy_vtu mesh-complete/mesh-complete.mesh.vtu
ERROR: In ./IO/XMLParser/vtkXMLParser.cxx, line 389
vtkXMLDataParser (0x616cbea6f930): Error parsing XML in stream at line 22, column 1, byte index 1456: not well-formed (invalid token)
ERROR: In ./IO/XML/vtkXMLReader.cxx, line 467
vtkXMLUnstructuredGridReader (0x616cbea66020): Error parsing input file. ReadXMLInformation aborting.
ERROR: In ./Common/ExecutionModel/vtkExecutive.cxx, line 781
vtkCompositeDataPipeline (0x616cbea66eb0): Algorithm vtkXMLUnstructuredGridReader(0x616cbea66020) returned failure for request: vtkInformation (0x616cbea6d650)
Debug: Off
Modified Time: 83
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
ERROR: Must specify number of nodes before you read them in!
ERROR: command could not be processed.
I am running this on a local Ubuntu workstation.
I am trying to compile a case from the SimVascular Repository name "0042_H_ABAO_AAA".
Followed this command:
Downloaded and Installed svSolver and SimVascular.
Code: Select all
sudo apt-get install gfortran
sudo apt-get install openmpi-bin
mkdir $HOME/vtk
cd $HOME/vtk
wget https://www.vtk.org/files/release/8.2/VTK-8.2.0.tar.gz
tar xvf VTK-8.2.0.tar.gz
mkdir build
cd build
cmake -DBUILD_SHARED_LIBS:BOOL=OFF \
-DCMAKE_BUILD_TYPE:STRING=RELEASE \
-DBUILD_EXAMPLES=OFF \
-DBUILD_TESTING=OFF \
-DVTK_USE_SYSTEM_EXPAT:BOOL=ON \
-DVTK_USE_SYSTEM_ZLIB:BOOL=ON \
-DVTK_LEGACY_REMOVE=ON \
-DVTK_Group_Rendering=OFF \
-DVTK_Group_StandAlone=OFF \
-DVTK_RENDERING_BACKEND=None \
-DVTK_WRAP_PYTHON=OFF \
-DModule_vtkChartsCore=ON \
-DModule_vtkCommonCore=ON \
-DModule_vtkCommonDataModel=ON \
-DModule_vtkCommonExecutionModel=ON \
-DModule_vtkFiltersCore=ON \
-DModule_vtkFiltersFlowPaths=ON \
-DModule_vtkFiltersModeling=ON \
-DModule_vtkIOLegacy=ON \
-DModule_vtkIOXML=ON \
-DVTK_GROUP_ENABLE_Views=NO \
-DVTK_GROUP_ENABLE_Web=NO \
-DVTK_GROUP_ENABLE_Imaging=NO \
-DVTK_GROUP_ENABLE_Qt=DONT_WANT \
-DVTK_GROUP_ENABLE_Rendering=DONT_WANT \
-DCMAKE_INSTALL_PREFIX=/$HOME/vtk/install \
../VTK-8.2.0
make
make install
Regards,
Pratik.