Hello,
I'm having this message when I try to find tau value:
"Estimated transition matrix contains entry, which is either NaN or Infinity."
The first steps mm_cluster and mm_assign went OK, I'm using 10 dcd trajectories each one of 100 000 frames (1psec timestep)
The whole prompt I got is:
mm_timescales -i discretized/r24[a-j]_448_skip10.disctraj -restrictToStates largestSet.dat -timestep 1.0 -lagtimes 1 2 5 10 20 50 100 200 500 1000 2000 5000 10000 20000 50000 -neig 10 -o result.its
Command line parameters valid.
Settings
--------
Lagtimes: 1 2 5 10 20 50 100 200 500 1000 2000 5000 10000 20000 50000
Reversible estimation: false
Restricting to states given in file 'largestSet.dat'.
Using 10 microstate trajectories for input:
Reading microstate trajectories.
Reading microstate trajectories finished.
Setting up.
Setting up count matrix estimator.
Setting up transition matrix estimator.
Computing implied timescales for lag 1
Computing implied timescales for lag 2
Computing implied timescales for lag 5
Computing implied timescales for lag 10
Computing implied timescales for lag 20
Computing implied timescales for lag 50
Computing implied timescales for lag 100
Computing implied timescales for lag 200
Estimated transition matrix contains entry, which is either NaN or Infinity.
Any ideas on how to solve this?
Nice day to everybody,
Gil