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Yao P, Zhang L, Latombe JC. (2012) Sampling-based exploration of folded state of a protein under kinematic and geometric constraints. Proteins. 80:25-43. (2012)
Fonseca, R., Pachov, D. V., Bernauer, J. & van den Bedem, H. (2014) Characterizing RNA ensembles from NMR data with kinematic models. Nucl. Acids Res. 42:9562-9572 (2014)
Budday, D., Leyendecker, S. & van den Bedem, H. (2015) Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations. J. Mech. Phys. Solids 83:36-47 (2015)
Pachov, D. V. & van den Bedem, H. (2015) Nullspace sampling with holonomic constraints reveals molecular mechanisms of protein Gαs. PLoS Comput. Biol. 11:e1004361 (2015)
Fonseca, R., van den Bedem, H. & Bernauer, J. (2015) KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids. In Research in Computational Molecular Biology, Lecture Notes in Computer Science (LNCS) 9029, Springer-Verlag (Berlin) pp. 80-95. (2015)