79
Publications
| Primary Publication |
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| Multi-Scale Modeling of Tissues Using CompuCell3D – M. Swat, Gilberto L. Thomas, Julio M. Belmonte, A. Shirinifard, D.Hmeljak, J. A. Glazier, Computational Methods in Cell Biology, Methods in Cell Biology 110: 325-366 (2012). PMID:22482955 PMCID: PMC3612985 DOI: doi.org/10.1016/b978-0-12-388403-9.00013-8 (2012) View |
| Related Publications |
| Izaguirre, J.A., Chaturvedi, R., Huang, C., Cickovski, T., Coffland, J., Thomas, G., Forgacs, G., Alber, M., Hentschel, G., Newman, S.A., and Glazier, J.A. CompuCell, a multi-model framework for simulation of morphogenesis, Bioinformatics 20, 1129-1137 (2004) View |
| Cickovski, T., Matthey, T., and Izaguirre, J.A., Design Patterns for Scientific Software, Technical Report 29, University of Notre Dame, Department of Computer Science and Engineering. (2004) View |
| Cickovski, T., Huang, C., Chaturvedi, R., Glimm, T., Hentschel, H.G.E., Alber, M., Glazier, J.A., Newman, S.A., and Izaguirre, J.A. A framework for three-dimensional simulation of morphogenesis, ACM Transactions on Computational Biology and Bioinformatics 2(4), 273-288. (2005) View |
| Aras, K., Cickovski, T., Cieslak, D., Huang, C., and Izaguirre, J. A. Simulation of Chicken Limb Growth with Irregular Domain Shape, Technical Report 9, University of Notre Dame, Department of Computer Science and Engineering (2005) View |
| Cickovski, T., BioLogo, A Domain-Specific Language for Morphogenesis. Master's Thesis, University of Notre Dame. (2004) View |
| Chaturvedi, R., Izaguirre, J. A., Huang, C., Cickovski, T., Virtue, P., Thomas, G., Forgacs, G., Alber, M. S., Newman, S. A. and Glazier, J. A. Multi Model Simulations of Chicken Limb Morphogenesis : Springer Verlag LNCS 2659, Computational Science - ICCS 2003, International conference Melbourne, Australia and St. Petersburg, Russia, Part II, pp 39-49 (2003) View |