bpp_align - Revision 5: /RNAstructure/PARTS/src/parts

• ..
• alignment_priors.cpp
• alignment_priors.h
• array_file_manager.cpp
• array_file_manager.h
• array_mem_manager.cpp
• array_mem_manager.h
• defines.h
• frag_aln_enum/
• main.cpp
• map/
• map_alignment.cpp
• map_alignment.h
• map_mhr_info.cpp
• map_mhr_info.h
• map_results.cpp
• map_results.h
• map_structures.cpp
• map_structures.h
• mem_tracker/
• parts_compilation_directives.h
• parts_paths.cpp
• parts_paths.h
• pf_alignment.cpp
• pf_alignment.h
• phmm_parameters.h
• platform.h
• posterior_pairing_prob_loops.h
• pp_ppf_loops.h
• pp_results.cpp
• pp_results.h
• ppf_cli.cpp
• ppf_cli.h
• ppf_loops.cpp
• ppf_loops.h
• ppf_math.h
• ppf_operators.cpp
• ppf_operators.h
• ppf_progress_bar.cpp
• ppf_progress_bar.h
• ppf_scale.cpp
• ppf_scale.h
• ppf_ss.cpp
• ppf_ss.h
• ppf_str_aln_metrix.cpp
• ppf_str_aln_metrix.h
• ppf_tb_stack.cpp
• ppf_tb_stack.h
• ppf_timer.cpp
• ppf_timer.h
• ppf_v_mhe.cpp
• ppf_v_mhe.h
• ppf_w.cpp
• ppf_w.h
• ppf_w_bpi.cpp
• ppf_w_bpi.h
• ppf_w_ext.cpp
• ppf_w_ext.h
• ppf_w_l.cpp
• ppf_w_l.h
• ppf_w_mb.cpp
• ppf_w_mb.h
• ppf_w_mbl.cpp
• ppf_w_mbl.h
• ppf_w_mhi.cpp
• ppf_w_mhi.h
• process_sequences.cpp
• process_sequences.h
• single_pf_array.cpp
• single_pf_array.h
• stoch_tb/
• structural_parameters.h
• structure.cpp
• structure.h
• template_pf_array.cpp
• template_pf_array.h