Dynalign_object Member List

This is the complete list of members for Dynalign_object, including all inherited members.

compoundmessage	TwoRNA
Dynalign(const short int maxtrace, const short int bpwin, const short int awin, const short int percent, const short int imaxseparation=-99, const float gap=0.4, const bool singleinsert=true, const char savefile[]=NULL, const bool optimalonly=false, const short int singlefold_subopt_percent=30, const bool local=false, const short int numProcessors=1, const int maxpairs=-1, const short int cycles=2)	Dynalign_object
Dynalign_object()	Dynalign_object
Dynalign_object(const char sequence1[], const char sequence2[], const bool IsRNA=true)	Dynalign_object
Dynalign_object(const char filename1[], const int type1, const char filename2[], const int type2, const bool IsRNA=true)	Dynalign_object
Dynalign_object(const char filename[])	Dynalign_object
Dynalign_object(const char *filename, const short maxtrace, const short bpwin, const short awin, const short percent)	Dynalign_object
ForceAlignment(const int i, const int k)	Dynalign_object
GetBestPairEnergy(const int sequence, const int i, const int j)	Dynalign_object
GetErrorCode()	TwoRNA
GetErrorMessage(const int error)	Dynalign_object
GetErrorMessageString(const int error)	TwoRNA
GetForcedAlignment(const int i, const int seq)	Dynalign_object
GetLowestEnergy()	Dynalign_object
GetRNA1()	TwoRNA
GetRNA2()	TwoRNA
ReadAlignmentConstraints(const char filename[])	Dynalign_object
SetProgress(TProgressDialog &Progress)	Dynalign_object
StopProgress()	Dynalign_object
Templatefromct(const char ctfilename[])	Dynalign_object
Templatefromdsv(const char dsvfilename[], const float maxdsvchange)	Dynalign_object
TwoRNA(const char sequence1[], const char sequence2[], bool IsRNA=true)	TwoRNA
TwoRNA(const char filename1[], const int type1, const char filename2[], const int type2, bool IsRNA=true)	TwoRNA
TwoRNA()	TwoRNA
WriteAlignment(const char filename[])	Dynalign_object
~TwoRNA()	TwoRNA