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DynalignDotPlot is used to create a pairing energy dot plot
for the structures of one of the two sequences folded by a Dynalign calculation.
USAGE: DynalignDotPlot <save file> <ps file> [options]
| <save file> |
The name of a file containing probability data from a
previous Dynalign calculation. These Dynalign save files
usually end in ".dsv".
|
| <ps file> |
The name of a Postscript image file to which output
will be written.
|
| -h, -H, --help |
Display the usage details message. |
| --s2, -S2, --sequence2 |
Use sequence 2, rather than the default of sequence 1. |
| -e, -E, --entries |
Specify the number of categories in the plot legend.
Default is 5 entries.
|
| -max, -MAX, --maximum |
Specify the maximum value in the plot in kcal/mol.
Default is the largest valid value in the plot.
|
| -min, -MIN, --minimum |
Specify the minimum value in the plot in kcal/mol.
Default is the smallest valid value in the plot.
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Reuter, J.S. and Mathews, D.H.
"RNAstructure: software for RNA secondary structure prediction
and analysis."
BMC Bioinformatics, 11:129. (2010).
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Mathews, D. H.
"Predicting a set of minimal free energy RNA secondary structures
common to two sequences."
Bioinformatics, 21:2246-2253. (2005).
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