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EnergyPlot is used to create a folding free energy plot
generated after determining the structure of a strand or
strands of nucleic acids.
The output is a Postscript document.
USAGE: EnergyPlot <save file> <ps file> [options]
| <save file> |
The name of a file containing probability data from a
previous folding calculation. These folding free energy
save files usually end in ".sav".
|
| <ps file> |
The name of a Postscript image file to which output
will be written.
|
| -h, -H, --help |
Display the usage details message. |
| -e, -E, --entries |
Specify the number of categories in the plot legend.
Default is 5 entries.
|
| -max, -MAX, --maximum |
Specify the maximum value in the plot.
Default is the largest valid value in the plot.
|
| -min, -MIN, --minimum |
Specify the minimum value in the plot.
Default is the smallest valid value in the plot.
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Reuter, J.S. and Mathews, D.H.
"RNAstructure: software for RNA secondary structure prediction
and analysis."
BMC Bioinformatics, 11:129. (2010).
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Zuker, M.
"On finding all suboptimal foldings of an RNA molecule."
Science, 244:48-52. (1989).
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