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ProbabilityPlot is used to create a base pairing probabilities
plot after calculating the partition function. The output is a Postscript document.
USAGE: ProbabilityPlot <save file> <ps file> [options]
| <save file> |
The name of a file containing probability data from a
previous partition function calculation. These partition function
save files usually end in ".pfs".
|
| <ps file> |
The name of a Postscript image file to which output
will be written.
|
| -h, -H, --help |
Display the usage details message. |
| -e, -E, --entries |
Specify the number of categories in the plot legend.
Default is 5 entries.
|
| -max, -MAX, --maximum |
Specify the maximum value in the plot.
Default is the largest valid value in the plot.
|
| -min, -MIN, --minimum |
Specify the minimum value in the plot.
Default is the smallest valid value in the plot.
|
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Reuter, J.S. and Mathews, D.H.
"RNAstructure: software for RNA secondary structure prediction
and analysis."
BMC Bioinformatics, 11:129. (2010).
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Mathews, D.H.
"Using an RNA secondary structure partition function to
determine confidence in base pairs predicted by free
energy minimization."
RNA, 10:1178-1190. (2004).
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McCaskill, J.S.
"The equilibrium partition function and base pair
probabilities for RNA secondary structure."
Biopolymers, 29:1105-1119. (1990).
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