>C.diphtheriae.1 BX248356.1/172244-172444
CUGUACAAAUCGCACCAAGGUG..UUAGUGUUG....................GGUGU..
..GUUGAAGU......GAUC..GGGAA.UGCC.A.G.UGC....................
...........AAUUCUGGCAGCGGACC.CC.GCCACUGUAA..CC.GCAAAUUA....U
GCCCAUUUCUA.................................GCCACUGCAG....U.
.........................................................CCU
.GCGGGAAGGG...UAG..A.AA..GACACACUUU.........................
................................UUACUGGGCGCGG.UAGCCAGGAGACCG
GCUUCAACAUUUUAUACGUAG
>C.diphtheriae.2 BX248357.1/28572-28772
UGUGUUACACAUUGAUUAGGU...GCAGCAU......................AGAAC..
..UGCUGC..........AU..GGGAA.U.CU.G.G.UGA....................
...........AAAUCCAG.AGCUGA.C.GC.GCAGCGGUGA..AG.GUGCA.......A
GUGAGUGCUUCAAUGUA...........................GCCACUGAGAGUAUAA
AAA......................................................CUC
.UUGGGAAGGU...GAG..G.CA..AUUACUCUCG.........................
.................................CGUAGAGCACCC.CAGUCCGAAGACCG
GCCUAAUCAGAAACAUGUGCU
>Mycobacterium_smegma.1 CP000480.1/6690166-6689959
GUACCGGCCAUCGAGUUCCGUG..UGCUGUC......................ACAGG..
..UGCGGAAC......GAGA..GGGAA.C.CC.G.G.UGA....................
...........AAAUCCGG.GACUGU.C.CC.GCAGCGGUAU..GC.AGGA........A
CGACCGCCGUCAUCA..............................GCACUGGCCCCGCCU
AG.......................................................GGG
.CUGGGAAGC....GAC..G.GC..CAGUAGGUGU.........................
.........................GCGUCAGCGCACGCGCCUGU.GAGUCCGAAGACCU
GCCAGCCGUACCGGAUGCGCC
>M.leprae.1 Z94723.1/23034-23246
CACACGGCGCCAGUAUCGAGU...GAUGCUA......................GCUC...
..AGCAUCGC......GAGA..GGGAA.C.CC.G.G.UGA....................
...........GAAUCCGG.GACUGU.C.CC.GCAGCGGUAU..GC.AGG.........A
ACGACCGCCGUCUGGA............................AGCACUGGUCUUAGAA
AAAUCCG..................................................AGA
.CUGGGAAGCG...AUG..G.CC..AUUAGAAGCA.........................
.........................CCUAUCCAGUGCGCGCCUGC.GAGUCCGAAGACCU
GCCGGCUGUGUCGGGCGCGCC
>Mycobacterium_smegma.2 CP000480.1/6704143-6703957
GGCUAUUGUUGUGGCGCUGGU...CGGCCCG......................ACCGGC.
..CCGAUGAG......UAGGU.AGGAA.G.CC.G.G.UGU....................
...........GAAUCCGG.CAUGGU.C.CC.GCCACUGUGA..CU.GGG.........G
AGCGAACCCCACAUCG............................ACCACGGCU..UGAC.
...........................................................G
.GCUGGAAGGU...CGG..G.GU..GAGCACUGAU.........................
.........................................CCAG.AAGUCAGGAUACU.
GCUCUCAUUGGCCCUCUUGCU
>Mycobacterium_ulcera.1 CP000325.1/140970-141190
AUCGCCCCACGCGGUGUCGGCA..UCGAGCGA.....................GGCAU..
..CAACGAUGCGUCGUAAGA..GGGAA.U.CC.G.G.UGA....................
...........GAAUCCGG.AACUGU.C.CC.GCAGCGGUAU..GC.AGGA........A
CGACCGCCGUCAUGAACGAAACA.....................AGCACUGGUCCUUCA.
.........................................................CGA
.CUGGGAAGC....GAC..G.GC..CACUAGAAGC.........................
.........................ACCACCGGGUGCGCGCCUGC.GAGUCCGAAGACCU
GCCAGUUGUGCCGGGCGCGCC
>M.leprae.2 AL583923.1/215513-215333
GUACUAUAUGCGACACUGUGUA..UCUGU........................AAAGG..
..CGAUGACG......AUGC..AGGAA.G.UC.G.G.UGC....................
...........AAAGCCGG.CGCGGU.C.CC.GCCACUGUAA..UC.GG..........G
GAGCGACCCUCGUAG.............................GCCACGGCCA......
.........................................................UUG
.GCUGGAAGGC...GAG..G.CA..AGCGGUGAU..........................
.........................................CCGA.GAGCCAGGAAACUC
GCGUCAUCGCGUCCUGCUAAC
>Mycobacterium_ulcera.2 CP000325.1/2461077-2460867
UUGUCGGCAUCAAGCGGCGGA...GGCUUUC......................GCAGC..
..UUCGUCGU......GAGA..GGGAA.C.CC.G.G.UGG....................
...........GAAUCCGG.GACUGU.C.CC.GCAGCGGUAU..GC.AGGA........A
CGAACACCGUCAUCG..............................GCACUGGCCCCACAG
CCUG.....................................................GGA
.CUGGGAAGC....GAC..G.GU..UAGUAGGAGC.........................
.......................ACCAUCGUCGGUGCGGGCCUGC.GAGUCCGAAGACCU
GCCAGUUGCGCCGGGCACGUU
>Mycobacterium_gilvum.1 CP000656.1/4145754-4145933
UGUAUGGCUGGUCGACCCGA....CCGGCCC......................CGAUG..
..AACAGG...........C..AGGAA.G.CC.G.G.UGU....................
...........GAAUCCGG.CGCGGU.C.CC.GCCACUGUGA..CC.GG..........G
GAGCGAACCCCACGUCG...........................ACCACGGCC..GAGA.
...........................................................G
.GCUGGAAGGU...CGG..G.GU..GAGCGCUGAU.........................
.........................................CCGG.GAGUCAGGAUACUG
CUCUCGUCGGCCCUCUUGCUG
>Mycobacterium_avium_.1 AE016958.1/2995864-2996105
AUCGAGCGAAGCAACGUUAGUA..ACGCUU..............................
.....CGU........AAGA..GGGAA.C.CC.G.G.UGA....................
...........GAAUCCGG.GACUGU.C.CC.GCAACGGUAU..GC.AGGA........A
CGACCGCCGUCACCA..............................GCACUGGUC.GCAA.
..........................................................GA
.CUGGGAAGC....GAC..G.GC..CACUAGGAACUGCCCGGCUCCUCGGCGGCCCUUCG
GGACCGCAUCGUCGGCCGGGCACGCACCACCCGGUGCGCGCCUGC.GAGUCCGGAGACCU
GCCAGCUGUGCCGGGCGCGCC
>Mycobacterium_avium_.2 CP000479.1/1283346-1283177
CAAGAAUGUCACCCGUAAGGUG...............................AUGA...
........CG......AUGC..AGGAA.G.CC.G.G.UGC....................
...........GAAUCCGG.CGCGGU.C.CC.GCCACUGUCA..UC.GG..........G
GAGCGACCCUCAACG.............................GCCACGGCU..GACA.
...........................................................A
.GCUGGAAGGC...GAG..G.CG..AGCGGCGAU..........................
.........................................CCGA.GAGCCAGGACACUC
GCGUCAUCGCGUCCUGCGACC
>Mycobacterium_bovis_.1 BX248334.1/308192-308010
CCACGCUCUGCAUGCCAAUAU...UCUUCCC......................GUCAGG.
..CGAUGACG......AUGC..AGGAA.G.CC.G.G.UGA....................
...........GAAUCCGG.CGCGGU.C.CC.GCCACUGUCA..CC.GG..........G
GAGCGACCCUCAUAA.............................GCCACGGCC...ACA.
...........................................................G
.GCUGGAAGGC...GAG..G.CA..AGCAACGAU..........................
.........................................CCGG.GAGCCAGGAGACUC
GCGUCAUCGCGUCCUGCCACC
>Mycobacterium_bovis_.2 BX248337.1/276050-275850
GGCAUCGAGCGGGGCAACGAUG..CUUCGC..............................
.....GAG...........A..GGGAA.C.CU.G.G.UGA....................
...........GAAUCCGG.GACUGU.C.CC.GCAGCGGUAU..GC.AGGA........A
CGACCGCCGUCUUGGAAGUAGACA....................AGCACUGGUCUCAAC.
..........................................................GA
.CUGGGAAGC....GAC..G.GC..CAGUAGGAGC.........................
........................ACCCACCGGGUGCGAGCCUGC.GAGUCCGAAGACCU
GCCAGCCGUGCCGGACGCGCC
>Mycobacterium_tuberc.1 BX842572.1/309867-309685
CCACGCUCUGCAUGCCAAUAU...UCUUCCC......................GUCAGG.
..CGAUGACG......AUGC..AGGAA.G.CC.G.G.UGA....................
...........GAAUCCGG.CGCGGU.C.CC.GCCACUGUCA..CC.GG..........G
GAGCGACCCUCGUAA.............................GCCACGGCC...ACA.
...........................................................G
.GCUGGAAGGC...GAG..G.CA..AGCAACGAU..........................
.........................................CCGG.GAGCCAGGAGACUC
GCGUCAUCGCGUCCUGCCACC
>Acidothermus_cellulo.1 CP000481.1/1942077-1942287
AUGGUGUCGCCUGCGACUGGUU..CGACCCC......................UCGGG..
..GUCGUGCC......AACA..GGGAA.C.CC.G.G.UGU....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GC.GGGA........A
CGACCGCUGUCAUCAA.............................GCACUGGGCCGGAC.
.........................................................GGC
.CUGGGAAGC....GAC..A.GC..CAGUAGGUGA.........................
....................CCGGCGAUUCGCCGGUCGGGCCCGC.AAGUCCGAAGACCU
GCCAGUCGCCCCGCGGACACC
>Acidothermus_cellulo.2 CP000481.1/1939207-1939426
UAGGCUGAGCCCGCAGCUGGU...UCGGCCGCAGGC.................GAUGC..
..AGCCGAGCU.....AACA..GGGAA.C.CC.G.G.UGC....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GU.GGGA........A
CGACCGCCGUCAACG..............................GCACUGGGC.GACA.
..........................................................GC
.CUGGGAAGC....GAC..G.GC..CAGUAGGCAA.........................
.............CGGUGACCGGCCGCUCCGGCGCCGCCGCCCAC.AAGUCCGAAGACCU
GCCAGCUGCACACCGCCGAUG
>Salinispora_tropica_.1 CP000667.1/4966842-4966623
AUGGUGUCUCCCGCAGCUGGU...UCGACCGCUCCCGCCG.............GGAGU..
..GGGCGAGGC.....AAGA..GGGAA.C.CC.G.G.UGG....................
...........GAGUCCGG.GACUGC.C.CC.GCAGCGGUGA..GU.GGG.........A
ACGACCGCCGUCAUCA............................CGCACUGGGCUCAUCG
A........................................................GGC
.CUGGGAAGCG...ACG..G.CC..AGUAGGCGAC.........................
.......................CGGGUCUCCCGGGCGUGCCCGC.GAGUCCGAAGACCU
GCCAGCGCGCCGCACGCGUCG
>Salinispora_arenicol.1 CP000850.1/3174011-3173839
AUAGCCUCUCGCCGUCAAGGUG......................................
...CA..............C..GGGAA.G.CC.G.G.UGA....................
...........AACACCGG.CGCGGCCC.UC.GCCACUGUGA..CC.GGG.........U
AGCGAUCUCCGACUAC............................GCCACUGGGCCCGACC
G........................................................GGU
.CUGGGAAGGC...CGG..A.GU..GAACGUCGAU.........................
.........................................CCGG.AAGCCAGGAGACCG
GCCUUGACAAGGAUCUCAUCC
>P.freudenreichii.1 AY033236.1/563-353
GUGUAGGCUAGUAGUGCUGGUU..CGGCUGCCC....................CACGG..
..CAGUCGUCGC....AAGA..GGGAA.U.CC.G.G.UGU....................
...........AAUUCCGG.AACUGU.C.CC.GCAGCGGUCA..AU.GG..........G
AACGACACAACGUAA.............................GGCACUGGGCGGCAA.
.........................................................CGC
.CUGGGAAGUA...GUA..G.UG..GAGGAAGUCG.........................
.......................GGAGUGAUCUCGCAAUGCCCAU.GAGUCCGAAGACCU
GCCAGCAGCGACAACAUCUGU
>Propionibacterium_ac.1 AE017283.1/2294565-2294765
AUAGUGACGAAUGCACGUGGUU..CCCGU........................GUUCG..
..CACGGGCC......AAGA..GGGAA.U.CC.G.G.UGU....................
...........GAAUCCGG.AGCUGC.C.CC.GCAGCGGUAU..AU.GAG.........A
ACGACCGCCGUCAUGA............................CGCACUGUGC..UUU.
.........................................................GGC
.AUGGGAAGCG...ACG..G.CU..AGUAGGAGUC.........................
...........................CGAUCAGGACGAGCUCAU.GAGCCCGAAGACCU
GCCAGGUGUGGUCCCGCAACC
>Saccharopolyspora_er.1 AM420293.1/5303093-5303317
GCCGAGAGCCGCGACCGCGGCG..GUC.................................
.....GAGGC......AAGA..GGGAA.C.CC.G.G.UGC....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GC.GGGA........A
CGAACGCCGUCCCCGGUCCGAGGAGACCGGGAAC..........AGCACUGGACCACAG.
.........................................................CGU
.CUGGGAAGC....GAC..G.GC..CAGUAGGAAC.........................
.............ACCCGGCCACGACGAGGCCGGGAAGCGCCCGC.GAGUCCGAAGACCU
GCCACCGGUGCGUGCACACCC
>Saccharopolyspora_er.2 AM420293.1/1414592-1414388
AGUGUGUCCCGCGCUGAUGGAU..CACCACG......................GAAG...
.....GUGAGGC....AACA..GGGAA.C.CC.G.G.UGC....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..AC.GGG.........A
ACGACCGUCGUGACCGGCUCCGGCCGGUAC..............GGCACUGGGCGCGCAC
G........................................................CGC
.CCGGGAAGCC...ACG..A.CC..AGUAGGCCGC.........................
.........................................CCGU.GAGUCCGAAGACCU
GCCAUCGGUGCGCGCACGAGG
>Saccharopolyspora_er.3 AM420293.1/6681388-6681576
UCGCCCUGUUGCGGAGAGUGUU..CGCAGCA......................UUCGA..
..GCGGCGAC......AGGUGGAGGAA.G.CC.G.G.UGC....................
...........GAGUCCGG.CGCGGU.C.CC.GCCACUGUCA..CC.GG..........G
GAGCGGACUCCAACGAC...........................GUCACUGCCC..UGC.
.........................................................GGG
.GCGGGAAGGC...GGA..G..C..GAGCGCUGAU.........................
.........................................CCGG.GAGCCAGGAGACU.
CCGGUCGCCGCGACCUACGAC
>Saccharopolyspora_er.4 AM420293.1/6698575-6698393
UCUGCGACGAUGCACGGUGGU...C............................CAAGC..
..AAGGAGUG......CGUC..AGGAA.G.CC.G.G.UGG....................
...........GAGUCCGG.CACGGCCG.GC.GCCACUGUGA..CC.GGG.........G
AGCGGACCUCCCCCGCGA..........................GCCACCGGG..GCGA.
...........................................................C
.CUGGGAAGGC..CGGA..G.GG..ACGCGGCGAG.........................
.........................................CCGG.GAGUCAGGACACU.
GCCACCCCUUGUUCCCACCAC
>Saccharopolyspora_er.5 AM420293.1/6688888-6688698
GACCUCGGUCGCUCUGGAGGU...CAGGAUA......................CGAC...
..GGCCUGCG......GCGC..AGGAA.C.CC.G.G.UGC....................
...........GAAUCCGG.GACGGU.C.CC.GCCACUGUGA..CC.GGG.........G
AGCGGACCCGACGUGCG...........................GCCACGGCCC.GUGA.
..........................................................GG
.GCUGGAAGGC...UCG..G.GU..GACCCGCUGC.........................
......................................GAUCCGG.GAGUCAGGAGACUC
GCUGCCGGCCCCGCGUCGCGC
>S.griseus.1 AF263012.1/9229-9015
AGGCUGACCGGUGCAGCUGGUU..CGCCCUGUCCGC.................CAGGC..
..AGGGUGUCGC....AAGA..GGGAA.C.CC.G.G.UGG....................
...........AAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GU.GGG.........A
ACGACCGCCGUCAUA.............................CGCACUGGGCCCGGAC
G........................................................GGU
.CUGGGAAGCG...ACG..G.CC..ACUAGGUGUC.........................
.........................UGCCCGGCAGACGUGCCCGC.GAGUCCGAAGACCU
GCCCGCUGCCCGCACGCGACC
>S.coelicolor.1 AL939107.1/147400-147583
CAGACCGUAGUAUCAGCGGGU...CAUCGCC......................GCG....
.....ACGGG......AGAC..AGGAA.G.CC.G.G.UGU....................
...........GAAUCCGG.CACGGU.C.CC.GCCACUGUGA..CC.GG..........G
GAGUGCACCCUUCGACAC..........................GCCACUGCGC..GCC.
..........................................................GC
.GCGGGAAGGC..CAGG..G.AG..GAGCGUCGAU.........................
.........................................CCGG.GAGUCAGGACACUG
GCCUGUCGCGGGCCCGUUCCG
>S.coelicolor.2 AL939107.1/141879-142126
ACGCUGAUGCCCGCAGUUGGUU..CGCGCCUCCUGUCCGAUCAGGUC......UCGGC..
..GGCGCGACGC....AAGA..GGGAA.C.CC.G.G.UGG....................
...........GAAUCCGG.GACUGU.C.CC.GCAGCGGUGA..GU.GGGA........A
CGAAAGCCGUCAACA..............................GCACUGGGCCCCAGA
UGAGUUGG.................................................AGC
.CCGGGAAGC....GAC..G.GC..CGGUAGGUGC.........................
.........CCGCCGGUGAUCCGUGUCCCCGGUGAGCGCGCCCAC.GAGUCCGAAGACCU
GCCACUGCGCCCGUACGCGAU
>S.coelicolor.3 AL939107.1/140625-140436
.GGACGCUGAUGGGAUGAUGG...CCGGCGACAG...................GGCGA..
..CGACGGUC......C..G..AGGAA.G.CC.G.G.UGC....................
...........GAAUCCGG.CGCGGU.C.CC.GCCACUGUGA..UC.GGU.........G
AGCGGAUCCCGAAGUU............................GCCACUGCCCCGGUA.
.........................................................GGG
.GCGGGAAGGC...CGG..G.AC..GAGCUGUGAC.........................
.........................................CCGG.GAGCCAGGAAACUC
ACGUCGUCGCCUCCUCGACGG
>S.coelicolor.4 AL939107.1/133849-134073
AGGCUGGCCCGUGCAGCUGGUU..CGCCCCGUCCGCCA...............GGCGG..
..GAUGCGUCGC....AAGA..GGGAA.C.CC.G.G.UGG....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GC.GGG.........A
ACGACCGCCGUCAUA.............................CGCACUGGGCCCGACG
UACCG....................................................GGC
.CCGGGAAGCG...ACG..G.CC..AGUAGGUGUC.........................
.....................CUCCGGACAGGAGGGUGGGCCCGC.GAGUCCGAAGACCU
GCCACCUGCCCGCGCGCGGAC
>S.coelicolor.5 AL939125.1/243385-243171
CCUGCUUGUGCCCACCCCGGUG..GGAGCACUACUGUC...............GCCAC..
..GCCUUGGU......GAAC..GGGAA.AUCC.G.G.UGU....................
...........GAUGCCGG.UGCGGCCC.UC.GCCACUGUGAA.UC.GGG.........A
AGUCCGGCUCCGGCCCUGACGGGCA...................GCCACUGGAUCGCUUG
C........................................................GGU
.CCGGGAAGGC...GGA..G.CA..CGGGCGGUGG.........................
......................................UACCCGU.AAGCCAGGAGACCG
GCCAAGGCGCGUCGUCCAUCC
>Streptomyces_avermit.1 BA000030.3/2496008-2496226
AGGCUGGGUGGUGCAGCUGGUU..CGCCCCGUCCGCCA...............GGCGG..
..GAGGCGUCGU....AAGA..GGGAA.C.CC.G.G.CGG....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GU.GGG.........A
ACGAACGCUGUCAUA.............................CGCACUGGGCCCAAAA
.........................................................GGC
.CCGGGAAGCG...ACG..G.CC..AGUAGGUGUC.........................
......................CUCCGUACGGAGGGCGUGCUCGC.GAGUCCGAAGACCU
GCCCGCUGCCCGUGCGCGACC
>Rubrobacter_xylanoph.1 CP000386.1/663892-664074
GUUAUCCUGCCCGGCGUAGGCG..GGCGA...............................
..GAGGUC...........C..AGGAA.G.CC.G.G.UGA....................
...........GAGUCCGG.CACGGU.C.CC.GCCACUGUGA..CC.GGG.........G
AGCGACCCCCGCACGCAGG.........................GCCACUGUCGCCGCGG
.........................................................GCG
.AUGGGAAGGC...CGG..G.GG..AAGCGGAGAU.........................
.........................................CCGG.GAGUCAGGAUACUG
GCCUCUCGCCGGAGAAACCCC
>Bacteroides_fragilis.1 AP006841.1/3073837-3073630
UAUAUUUGUCGGCAGAUUGGU...UCGCCGAAGCUUUCCU.............GCUUU..
..GGGCGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AACUCCCG.GACAGU.C.CC.GCUGCUGUGA..AG.CUUUAUUAU...A
AACAUUCCGAUAGGAUACUCUUUG....................GCCACUGACUCGUGU.
..........................................................AG
.UCGGGAAGGC..GUUC..G.GA..AUGGA..............................
.........................................AGCU.AAGUCAGAAGACCU
GCCACUCUCGCUGAUAAGUCU
>B.fragilis.1 AY043208.1/560-782
UAUCUUUGCUCCCUGAUCGGU...UCCGAAUAGUCAUUC..............CUCUA..
..UCCGGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.GC.UCCGUC......U
GAAUUUCCGAUAACAACUGUU.......................GCCACUGGGAUACCUU
UUUGUAAAUAGAUAAGGA.......................................GUC
ACCGGGAAGGC...GUC..G.GA..AACAAG.............................
.........................................GAGU.CAGUCAGAAGACCU
GCCGCUUAUCAAAGGCUGUUU
>Bacteroides_uniformi.1 AAYH02000045.1/230200-229995
UAUCUUUGCCCGCGAAUUGGU...UCCGGAUGCAUGUUUC.............CAUCA..
..UCUGGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.GC.UCCGU.......U
UAUAUCAUGAAAAACACCCUU.......................GCCACUGAUAUGCAUU
GAA......................................................AUA
.UCGGGAAGGC...UUC..A.GG..AUUAG..............................
.........................................GAGU.CAGUCAGAAGACCU
GCCAUUCAUUAAAGGCUGCCU
>Bacteroides_fragilis.2 AP006841.1/4035424-4035643
UAUAUUUGUCGCCGAAUUGGU...UCGGAAUCCGUGGUCA.............ACGGA..
..CGAAGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.AC.UCUGUA......U
AGCAUCUUAUCAAUCAGCCAAUUUCGU.................ACCACUGACAGAAAAA
GCAAACU..................................................CUG
.UCGGGAAGGUCCCGGU..A.AG..AUGUA..............................
.........................................GAGU.CAGUCAGAAGACCU
GCCAUUCGUGAAUAAGAGCAU
>Bacteroides_fragilis.3 AP006841.1/2882136-2881925
UUAUCUUUGUCCCGAAUUGGUU..UCGAAUGAAGACUUU..............CGUCA..
..UUCGGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.GC.UUCAU.......C
GAUAUCUUGAAACAAUCCUUUC......................GCCACUGACGUGGGGG
GAAUACCU.................................................CCG
.UCGGGAAGGC...UUC..A.AG..AUUAG..............................
.........................................AAGU.CAGUCAGAAGACCU
GCCGUUCAUCAAAGGCUGUUU
>Bacteroides_thetaiot.1 AE015928.1/1832233-1832438
UAUCUUUGUCCCCGCAUUGGU...UUGCGACUCUCAUCAC.............GAGGG..
..AAGCGAUU......AAAA..GGGAA.U.CA.G.G.UGU....................
...........AAAUCCUG.AACAGU.C.CC.GCUGCUGUAA..GU.UCCAUAGA....U
AUGUUGCGAGCAAUCUACUCAAA.....................GCCACUGGAAAGAAA.
.........................................................AUU
.CCGGGAAGGC...GCC..C.GC..AACAG..............................
.........................................GAAU.AAGUCAGAAGACCU
GCCAUGUAAAAUCCGUUUCAC
>Bacteroides_thetaiot.2 AE015928.1/1836296-1836502
CUAUCUUUGUCGCGCAUUGGU...UUGCAACUCUCAUGCAC............GAGGG..
..AAGCAAUU......AAAA..GGGAA.U.CA.G.G.UGA....................
...........AAGUCCUG.AACAGU.C.CC.GCUGCUGUAA..GU.UCAUUUU.....U
UGGUUGCGAGCAAUCGACUUUAUA....................GCCACUGGAAAGCAA.
.........................................................AUU
.CCGGGAAGGC...GUU..C.GC..AACAG..............................
.........................................GAAC.AAGUCAGAAGACCU
ACCAUGCAAACUCGUUUCACU
>Bacteroides_thetaiot.3 AE015928.1/2403656-2403862
AUCUUUGCCCCCCGAAAUGGU...UCGGAGUCCGUGUCCA.............ACGGA..
..CAACGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.UACAGU.C.CC.GCUGCUGUGAA.GC.UCUAUA......C
AAUGUCUUAUUAAUGAACUAAUUUAUC.................GCCACUGAU..GUUA.
.........................................................U.U
.UCGGGAAGGC...ACU..A.UA..AGACAA.............................
.........................................GAGU.CAGUCAGAAGACCU
GCCACUUCGCGUAAAGCGUUC
>Bacteroides_vulgatus.1 CP000139.1/5040129-5040332
GUAUCUUUGCAGUGCAUCGGU...UCAUUUAUCUCCCCUCC............GAGGU..
..GAAUGAUU......AAAA..GGGAA.U.CAAG.G.UGA....................
...........GAAUCCUG.AACAGU.C.CC.GCUGCUGUAU..GU.UUCACU......A
AACGCAUAAGCAAAAUGCCAAUA.....................ACCACUGGGA.UAAU.
..........................................................UU
.CCGGGAAGGU...GCU..U.AU..AGCGG..............................
.........................................AAAC.GAGUCAGAAGACCU
GCCUGUGCAUUUAUCAAAUCU
>Bacteroides_uniformi.2 AAYH02000049.1/356589-356390
CUAUCUUUGUCCACGUUUUGU...UCCGCGUUCUCUAUCC.............GGAGA..
..AGCGGAUG......AAAA..GGGAA.U.CG.G.G.UGA....................
...........AAGUCCCG.AACAGU.C.CC.GCUGCUGUGA..GU.UCCAU.......G
CUCGGUGUAUCAUACUUGU.........................GCCACUGUUCUUCGGG
A........................................................AGA
.ACGGGAAGGC...GAU..G.UA..CCGG...............................
.........................................GAAC.GAGUCAGAAGACCU
GCAAAACAAAGUCGAAAAAUU
>Bacteroides_vulgatus.2 CP000139.1/3926628-3926422
UUAUCUUUGCCCCGAAUUGGUU..UCGGAUAGUCUAUC...............UGCUA..
..UUCGGAUU......AAAA..GGGAA.U.CG.G.G.UGC....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.AC.UCUGC.......U
GGAAUCUUGAAAAAUACCUUU.......................GCCACUGAUGUGACAA
UCCUC....................................................ACA
.UCGGGAAGGC...UUC..A.AG..AUAAG..............................
.........................................GAGU.CAGUCAGAAGACCU
GCCAUUCAUUAAAGGCUGUUU
>Bacteroides_fragilis.4 CR626927.1/1843997-1843789
UUAUCUUUGCAGUGCAUUGGU...UUGUAUUCUCCGUGUUC............CGGGG..
..AUGCAAUU......AAAA..GGGAA.U.CA.G.G.UGC....................
...........AAAUCCUG.AACAGU.C.CC.GCUGCUGUAA..GU.UUCACAUCAG..A
UUGUUGUAAGCAACCACCACUU......................GCCACUGGGAAACGU.
.........................................................UUC
.CUGGGAAGGC...GCU..U.AU..CAACAG.............................
.........................................AAAC.GAGUCAGAAGACCU
GCCUGUGCAUCUUUUUCAUUG
>Bacteroides_uniformi.3 AAYH02000045.1/230243-230451
UAUCUUUGUCCCAGUUUUGGUU..UCACCUCUCCCGGUUCUGUUG........GAGAU..
..GAGUGAUGA.....AAAA..GGGAA.U.CA.G.G.UGC....................
...........AAAUCCUG.AACAGA.C.CC.GCUGCUGUAA..GU.CCUUCCA.....A
AAUCUUUGAAUAUUCUACAA........................GCCACUGUCCGCCCGG
.........................................................CGG
.AUGGGAAGGC...AUU..C.AA..AGAG...............................
.........................................GGAU.AAGUCAGAAGACCU
GCCAAGACAACAUAGUUUUAG
>Bacteroides_caccae_A.1 AAVM02000005.1/21577-21370
CUAUCUUUGUCGCGCAUCGGU...UUGCAACUCUCACAUAC............GAGGG..
..AAGCGAUU......AAAA..GGGAA.U.CA.G.G.UGU....................
...........AAAUCCUG.AACAGU.C.CC.GCUGCUGUAA..GU.UCCACACAU...U
ACGUUGCGAGCAACCUACUUUUA.....................GCCACUGGAAAGAAA.
.........................................................CUU
.CCGGGAAGGC...GCC..C.GC..AACAG..............................
.........................................GAAC.AAGUCAGAAGACCU
GCCGUGCAACCAAUUUCACUG
>Bacteroides_ovatus_A.1 AAXF02000043.1/123852-123648
AUCUUUGCCCCCCGAAAUGGU...UCAGAAUCCGUAUCCA.............ACGGA..
..CGACGAUU......AAUA..GGGAA.U.CG.G.G.UGU....................
...........AAGUCCCG.AACAGU.C.CC.GCUGCUGUGAA.GC.UC..........U
GUUCAAUGUCUUAUAAUUGAACUAAUUUAAC.............GCCACUGAU..GUUA.
...........................................................A
.UCGGGAAGGC...AAA..U.AA..GACAA..............................
.........................................GAGU.CAGUCAGAAGACCU
GCCAUUUUGUGUAAGACGCUC
>Bacteroides_vulgatus.3 CP000139.1/3919800-3919587
UAUCUUUGUUCCCGAAUCGGU...UCCGAAUAGAUGUC...............CUCUA..
..UCCGGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.AC.UCCGAU......A
AAAUUUCCGAUACGUACCUAUU......................GCCACUGCCUGACUCC
ACAUAACGAG...............................................AAC
.GCGGGAAGGC...AUC..G.GA..AAUGAG.............................
.........................................GAGC.CAGUCAGAAGACCU
GCCAUUCAUCAAAGGCCGUUU
>Bacteroides_ovatus_A.2 AAXF02000053.1/97071-97271
CUAUCUUUGUCGCGCAUUGGU...UUGCGACUCCCAUGC..............GGGGG..
..AAGCAAUU......AAAA..GGGAA.U.CA.G.G.UGU....................
...........AAAUCCUG.AACAGU.C.CC.GCUGCUGUAA..GU.UCCAUG......C
AUGUUACAAGCAAUUCACUCAUU.....................GCCACUGGAG.ACUA.
..........................................................AU
.CUGGGAAGGC...GUU..U.GU..AACAG..............................
.........................................GAAU.AAGUCAGAAGACCU
ACCAUGCAAUUAUGUUUCACU
>Bacteroides_caccae_A.2 AAVM02000011.1/57485-57690
UAUCUUUGCCGCCGAAAUGGU...UCGGAAUCCGUAGCCA.............ACGGA..
..CGACGAUU......AAUA..GGGAA.U.CG.G.G.UGC....................
...........AAAUCCCG.AACAGU.C.CC.GCUGCUGUGAA.GC.UC..........A
GUUCAAUGUCUUAUAAAUGAACUAAUUUGAC.............GCCACUGAU..GUUC.
.........................................................U.A
.UCGGGAAGGC...AAA..U.AA..GACAA..............................
.........................................GAGU.CAGUCAGAAGACCU
GCCACUUCACGUAAAACGUUC
>Bacteroides_ovatus_A.3 AAXF02000050.1/365024-364813
UAUCUUUGCCCCUGAAUUGGU...UUCAGAUAGCCAUAUC.............AACUA..
..UCUGAAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.AC.UCUAUU......C
AACUUCUUGAUAUUUACUUUU.......................ACCACUGACCGGGUAU
AGAUAGUCA................................................AGG
.UCGGGAAGGA...AUC..A.GG..AAGG...............................
.........................................GAGU.CAGUCAGAAGACCU
GCCAUUCAUACCUUUAUAGCU
>Bacteroides_uniformi.4 AAYH02000040.1/99907-100108
GUAUCUUUGUCAUGCAUUGGU...UCGCUCCCCCUCUUC..............UGGGA..
..AAGCGAUU......AAAA..GGGAA.U.CA.G.G.UGU....................
...........AAAUCCUG.GACAGU.C.CC.GCUGCUGUAA..GU.UUCGUGC.....A
ACGUUGCAGACAAUUACUCUAU......................GCCACUGGAAUAUUC.
..........................................................UU
.CCGGGAAGGC...GCC..U.GC..AACAG..............................
.........................................AAAC.AAGUCAGAAGACCU
GCCAUGCAUACUUUAUCAUUG
>Parabacteroides_dist.1 CP000140.1/2695629-2695426
UAUCUUUGCUACAUGCUUUGU...UCCCUUUCGGCAAUCG.............CCGGA..
..UAGGGAUU......AAAA..GGGAA.U.CG.G.G.UGA....................
...........GAAUCCCG.GACAGU.C.CC.GCUGCUGUAA..GC.UUCAUA......A
ACGGGUUGAGCAAUACUGUU........................GCCACUGUUCAUUCAA
G........................................................UGA
.AUGGGAAGGC...GCU..U.AA..GACCGG.............................
.........................................AAGU.AAGUCAGAAGACCU
GCAAGGCGUGUAUAUUUUCGA
>Parabacteroides_dist.2 CP000140.1/1176516-1176715
ACUUUUGUCACUGUAACAGGC...UCCGCUUAUCUCUUUUUC...........CGGGA..
..GGCGGAUU......AAAA..GGGAA.C.CG.G.G.UGA....................
...........GAAUCCCG.GACAGACC.AC.GCUGCUGUGA..AC.UUUU........A
AACAUUCGGACAAUACCUUG........................GCCACUGGUU.UUGU.
..........................................................AA
.UCGGGAAGGC...GUC..C.UG..AAUGG..............................
.........................................AAGU.AAGUCAGAAGACCU
GCCGGUUCAUAAAUAAAUGUU
>Parabacteroides_dist.3 CP000140.1/4143906-4143709
UACCUUUGCAUCCGAAUUGGU...UCCGUACGCUCGUUC..............GGGCA..
..UACGGAUU......AAAA..GGGAA.U.CC.G.G.UGA....................
...........GAAUCCGG.UACAGU.C.CC.GCUGCUGUGAA.AC.UCCUU.......U
AACAUUCUAAUACUACUUUC........................GCCACUGGCCUAGUA.
..........................................................AG
.CCGGGAAGGC...AUU..A.GA..AUGG...............................
.........................................GAGU.CAGUCAGAAGACCU
GCCAUUCAUUUAAGAUUCAUA
>Parabacteroides_merd.1 AAXE02000001.1/18090-18297
UAAUUUUGUCUUCGGAUCGGUU..UCGUAUGAUUAAAUCA.............GAUGA..
..UACGGAUU......AAAA..GGGAA.U.CG.G.G.UGA....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.GC.UCCGUUU.....C
AACAUCCUGAAAACUACUUUU.......................GCCACUGGUUUAUGGU
UAU......................................................AAA
.CCGGGAAGGC...UUC..G.GG..AUGG...............................
.........................................GAGU.CAGUCAGAAGACCU
GCCGUUCAUUAAAGGCUAUUC
>Parabacteroides_merd.2 AAXE02000001.1/9613-9819
UACAUUUGCCACCGAAUCGGU...UCUGUAUUUCCCGUUC.............GGGAA..
..UAUGGAUU......AAAA..GGGAA.U.CG.G.G.UGU....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUGAA.GC.UCCGUUU.....U
AACAUCUUGGAACUACUUUC........................GCCACUGACUUGUUAU
AAUU.....................................................AAG
.UCGGGAAGGC...UUC..A.GG..AUGG...............................
.........................................GAGU.CAGUCAGAAGACCU
GCCGUUCAUUAUAAGGUUCAU
>Parabacteroides_merd.3 AAXE02000112.1/379532-379335
UAUAUUUGUCCCAUGCAUUGU...UCCUGCUUCGCAAUCU.............GCGGA..
..AAAGGAUU......AAAA..GGGAA.U.CG.G.G.UGC....................
...........AAAUCCCG.GACAGU.C.CC.GCUGCUGUAA..GC.UUCAA.......A
ACGGAUUGGGCAAUUCUUUUAU......................GCCACUGAC..GCGA.
...........................................................G
.UUGGGAAGGC...GCU..C.AU..ACCGG..............................
.........................................AAGU.AAGUCAGAAGACCU
GCAACGCAUAUUUUUUCGACG
>Parabacteroides_merd.4 AAXE02000103.1/317216-317417
UAUUUGCCCUUUGAAACAGGU...UUCCCUGUCCUCCUUA.............CAGGA..
..CAGGAAUG......AAAA..GGGAA.C.CG.G.G.UGG....................
...........AAAUCCCG.GACAGACC.AC.GCUGCUGUGAA.AC.UUCGG.......U
AACAUACCGGCAAUACUCAAU.......................GCCACUGAUC.GGGG.
..........................................................GA
.UCGGGAAGGU...GUC..C.GG..GGAUGG.............................
.........................................AAGU.AAGUCAGAAGACCU
GCCGUUUCGGUUUUGAAGAGU
>Parabacteroides_merd.5 AAXE02000101.1/25986-25779
UACCUUUGCCACAGUUUUGGUU..UCACGGCUCCCAACCGCUAC.........GGGAG..
..GCGUGAUG......AAAA..GGGAA.U.CA.G.G.UGC....................
...........GAAUCCUG.AACAGA.C.CC.GCUGCUGUAA..GU.UCCUCUCC....A
AAUCUUUGAAUACGCUACAA........................GCCACUGUCCGUCAC.
.........................................................CGG
.AUGGGAAGGC...AUU..C.AA..AGACG..............................
.........................................GAAC.AAGUCAGAAGACCU
GCCAAAACAAACAUAGUUUUA
>Cytophaga_hutchinson.1 CP000383.1/1884029-1884217
ACCUUUGUUCCCGUUAAUGGU...UUAUUUCAAC...................GUUUG..
..AAAUAAUU......AAAA..GGGAA.G.CC.G.G.UGU....................
...........AAAUCCGG.AACAGUUC.CC.GCUGCUGUAA..GC.UCAUCAU.....U
ACGUUAUAUUUCAUUUA...........................GCCACUGAAU....U.
.........................................................UAU
.UUGGGAAGGC...GGA..U.AU..AACA...............................
.........................................GAGU.AAGUCAGAAGACCU
GCCACUAACACACUAUUCGAA
>Synechococcus.1 BX569694.1/273573-273792
CCCCUAGGGUUUGGGUCUGGUU..UCAGCGGGGA...................UCAGC..
..CGCUGAUGGA....AACG..GGGAAAGAAC.G.G.UGC....................
...........AAAUCCGU.CGCUGU.C.CC.GCAGCUGUAA..AG.CGUCCGGCCCCGC
CGGCGUCAGUCAGAAC............................G...CCCGCCAGGAGC
ACUAC....................................................CGA
.CGAGGAU..C...GAC..U.UU..GACCAAUCUU.........................
.........................CUGGCUUCUCCCCGGCCUCU.GCGCCAG....GCC
GCCGUUGCCGCAUUGGCCUUG
>B.megaterium.1 AJ000758.1/1191-1370
UCAAACAGCAACAGUAAAGGU...GCCAA...............................
..GAAGGCUU......AAUA..GGGAA.A.CU.G.G.UGA....................
...........AAGACCAG.UACUGCCC.CC.GCAACUGUAA..GU.GU..........G
GACGAACGAGUAUA..............................ACCACUGUGAAAAAA.
..........................................................UC
.ACGGGAAGGU...UCU..C.AA..GUAGAAUGAU.........................
.........................................ACAC.AAGUCAGGAGACCU
GUCUUUAUUGUGAAGUUUCUA
>B.megaterium.2 AJ000758.1/1489-1668
CAUAUCGUGCAAAAAAAAGGUG..CGUAAUA......................UUUAC..
..AUUGCGUU......AAAU..GGGAA.GUCU.G.G.UGU....................
...........GAAGCCAG.CGCGUA.C.CC.GCCACUGUGA..AG.A...........G
GAGCUGAUUGCAUUU.............................GCCACUGUA.......
...........................................................U
.UCGGGAAGGC...GCA..A.UC..AAGUGAUGAA.........................
..........................................UCG.AAGUCAGGAAACCA
GCCUUUUUCUAAUGCUAAGCU
>Bacillus.1 ABCF01000001.1/214794-214982
UACAUAUUGUCGUAAACAGGU...GAUUUCAGUCG..................AAUCU..
..GAAGUCUU......AAAA..GGGAA.G.UU.G.G.UGA....................
...........AAUUCCAA.CGCGGU.C.CC.GCCACUGUAA..AU.UG..........G
GAGCAAGCUGUGAUUA............................ACCACUGUAC.UAAU.
..........................................................GU
.AUGGGAAGGA...ACA..G.CG..AGCAAUGA...........................
.........................................CCAU.AAGCCAGGAGACCU
GCCUGUUACUGCUGCACCACA
>Bacillus.2 AAXV01000016.1/49194-49376
UCAUAUAAAACGUCGAUAAGUG..CUCGAAG......................AACU...
....CGAGAU......AAUA..GGGAA.A.UU.G.G.UGA....................
...........AAGUCCAA.UACAGCCC.CC.GCUACUGUAA..UA.GC..........U
GAUGAAAUCGCAAU..............................GCCACCUGU..GCAA.
.........................................................A.C
.UAGGGAAGGU...GCG..A.CA..GUAAAAUGAA.........................
.........................................GCUU.AAGUCAGGAAACCU
GCUUAUCAGAUUGUGCAUGCA
>Bacillus.3 ABCF01000035.1/16750-16938
UGCAAUGCCGGUAAAUAUGGU...GUCUA........................UAUA...
.....GACAA......AAUA..GGGAA.U.CU.G.G.UGA....................
...........AAGUCCAG.AACUGUCC.CCCGCAACUGUAA..GU.GC..........U
GACGAAAUAAGCGUUG............................ACCACUGCCUCUGAAU
AUA......................................................GAG
.GCGGGAAGGG...CUU..A.AA..GUAGGAAGAA.........................
.........................................GCAC.AAGUCAGGAGACCU
GCCAUAUUUAUAGCGUCUUAU
>Bacillus_coagulans_3.1 CP003056.1/1126059-1125863
AUAUAGUAUGCGAGUAUUGGU...GGCUUUG......................AGAU...
.....GCCUG......AAAA..GGGAA.U.CC.G.G.UGG....................
...........GAAACCGG.AGCUGCCC.CC.GCAACUGUCA..GU.GU..........G
GACGAAAGAGCAAA...............................CCACUGUACCGGCUG
CUUUUUUUGGCGGC...........................................GGU
.AUGGGAAGG....GCU..U.CA..UUAGAAUGAA.........................
.........................................ACAC.AAGCCAGGAGACCU
GCCAAUACUUGAAGUUUCUAU
>Bacillus.4 AAOX01000008.1/103201-103005
UAAGAAUCCGCAAGCGAUGGU...GCCCUUU......................UAG....
.....GGCAU......AAUA..GGGAA.U.CC.G.G.UUC....................
...........AACGCCGG.AGCUGUCC.CC.GCAACUGUAA..GU.GU..........G
UACGAAAUGAGCA...............................UCCACUGUAUAUGAAC
GCUGAAUAGGCGCA...........................................UAU
.AUGGGAAGGG...CUC..A.GA..GUAGGAUGAA.........................
.........................................GCAC.AAGCCAGGAGACCU
GCCAUGCUUGUACGAGUUUCG
>Geobacillus_kaustoph.1 BA000043.1/935017-935212
AUCGUUGCGCCAAGCAAUGGU...GUCCA........................UCAG...
.....GACUU......AAUA..GGGAA.U.CC.G.G.UGU....................
...........GAAUCCGG.AACUGCCC.CC.GCAACUGUAU..GU.GC..........G
GACGAAAUGGGAUG..............................GCCACUGGCGGCAAGA
GCCAUUCGGCGCG............................................CCG
.CUGGGAAGGC...CCC..A.AA..GUAGGACGAU.........................
.........................................GCAC.GAGUCAGGAGACCU
GCCUUGCUUGGAACGUUUCAU
>Geobacillus_thermode.1 CP000557.1/2323587-2323388
UUCAUAGACUCGCAGCAAGGU...GCCGC...............................
..GAAGGCUU......AAUA..GGGAA.U.CC.G.G.UGG....................
...........GAAUCCGG.AACUGUCC.CC.GCAACUGUCA..AU.GC..........G
GACGAAAUGAAAUU..............................GCCACUGUGCGGCUGG
AUGGCUUGCGCCGUCUCC.......................................CGC
.AUGGGAAGGC...UUC..A.GA..GUAGGAUGAA.........................
.........................................GCAU.GAGUCAGUAGACCU
GCCUUGCUUGCGCAAAAGUUU
>Geobacillus_thermode.2 CP000557.1/1789202-1789010
UGGCGGUAAGACAAACAAGGUG..CCUAGCCCGCU..................UAGGG..
..CUUGGGUG......AAAA..GGGAA.GCUC.G.G.UGA....................
...........AAAUCCGG.CACGGUGC.CC.GCCACUGUGA..UG.GG..........G
AGCUUUGCGGCAACAA............................GUCACUGAAG..GAU.
.........................................................GCU
.UCGGGAAGAC...GCC..G.CC..AAGCGAUGA..........................
.........................................UCCU.AAGUCAGGAGACCU
GCCUUGUUUGGAUCGGACGGA
>Geobacillus_thermode.3 CP000557.1/868974-869170
AUGGUGAUUGCAAGCAAUGGU...GUCCA........................UCAG...
.....GACUU......AAUA..GGGAA.U.CC.G.G.UGC....................
...........GAAUCCGG.AACUGCCC.CC.GCAACUGUAU..GU.GC..........G
GACGAAAUGGGAUG..............................GCCACUGGCGGUGAAA
GCUUGCACGGCACG...........................................CCG
.CUGGGAAGGA...CCC..A.AA..GUAGGACGAU.........................
.........................................GCAC.GAGUCAGGAGACCU
GCCUUGCUUGGAAGUUUCAUG
>Geobacillus_kaustoph.2 BA000043.1/2300644-2300445
UAAAUCAACUCGCAGCAAGGC...GCCGA...............................
..AAAGGCUU......AAUA..GGGAA.U.CC.G.G.UGG....................
...........GAAUCCGG.AGCUGUCC.CC.GCAACUGUCA..AU.GC..........G
GACGAAAUGAAAUC..............................GCCACUGUACGGACGG
AUGGCUUGCGCUGUUUUC.......................................CGU
.ACGGGAAGGC...UUC..A.GA..GUAGGAUGAA.........................
.........................................GCAU.GAGCCAGUAGACCU
GCCUUGCUUGCCGCAGUUUCC
>L.monocytogenes.1 AL591978.1/56481-56658
GUACUAAACAACUAAAUAGGUG..AAU.................................
.....AUAUU......AAUCC.GGGAA.A.GA.G.G.UGA....................
...........AAAUCCUC.UACAGGCC.CUAGCUACUGUAA..UA.C...........G
GACGAAAACCAAACAUAU..........................GUCACUGGAA.GCAA.
..........................................................UU
.CCGGGAAGAC...UGG..U.GA..GUAGGAUGAU.........................
..........................................GUU.AAGUCAGGAGACC.
GCUUUUAUAUUCGAUAUCCAA
>L.innocua.1 AL596167.1/202425-202602
GUACUAAACAACUAAAUAGGUG..AAU.................................
.....AUAUU......AAUCC.GGGAA.A.GA.G.G.UGG....................
...........AAAUCCUC.UACAGGCC.CUAGCUACUGUAA..UU.C...........G
GACGAAAGCCAAACAUAU..........................GUCACUGGAA.GAAA.
..........................................................UU
.CCGGGAAGAC...UGG..U.GA..GUAGGUUGAU.........................
..........................................GAU.AAGUCAGGAGACC.
GCUAGUAUAUUCGAUAUCCAA
>L.innocua.2 AL596167.1/167425-167616
UUAAAUAGGUCUUAUGUUGGU...GGAAUGU......................GUUUG..
..CAUUUCUG......AAAG..AGGAA.U.UC.G.G.UAU....................
...........GAAGCCGG.AACUGCCC.CC.GCAACUGUAA..GG.UG..........G
ACAAGAAUUGAAAAUA............................ACCACUGUGCGUUUUU
GA.......................................................CGU
.AUGGGAAGGU...UCA..A.UU..GUUGAAUGA..........................
.........................................AGCC.AAGUCAGGAUACUC
GCCAAAUAAGACGGAAGCAAC
>Listeria_welshimeri_.1 AM263198.1/1122851-1123040
UUAAAUAGGUCUUAAGUUGGU...GAAAUGU......................AUUUG..
..CAUUUCUG......AAAG..AGGAA.U.UC.G.G.UGC....................
...........AAUGCCGA.AACUGCCC.CC.GCAACUGUAA..GG.UG..........G
ACAAGAAUUGAGAAA.............................ACCACUGUGCGUUUAA
U........................................................CGU
.AUGGGAAGGU...UCA..A.UU..CUUGGAUGA..........................
.........................................AGCC.AAGUCAGGAUACUC
GCCAAAUAAGACGGAAGCAAC
>Listeria_monocytogen.1 CP001175.1/1515606-1515417
UUAAAUAGGUCUUAUGUUGGU...GGAAUGU......................AUGUG..
..CAUUUCUG......AAAG..AGGAA.U.UC.G.G.UGC....................
...........GAUGCCGA.AACUGCCC.CC.GCAACUGUAA..GG.UG..........G
ACAAGAAUAGAUAUA.............................ACCACUGUACGUUUUA
A........................................................UGU
.AUGGGAAGGU...UCU..A.UU..GUUGGAUGA..........................
.........................................AGCC.AAGUCAGGAUACUC
GCCAAAUAAGCCGGAAGCAAC
>Listeria_monocytogen.2 AARL02000087.1/606-795
UUAAAUAGGUCUUAUGUUGGU...GGAAUGU......................AUGUG..
..CAUUUCUG......AAAG..AGGAA.U.UC.G.G.UGC....................
...........GAUGCCGA.AACUGCCC.CC.GCAACUGUAA..GG.UG..........G
ACAAAAAUAGAUAUA.............................ACCACUGUACGUUUUA
A........................................................UGU
.AUGGGAAGGU...GCU..A.UU..GUUGGAUGA..........................
.........................................AGCC.AAGUCAGGAUACUC
GCCAAAUAAGCCGGAAGCAAC
>L.monocytogenes.2 AL591978.1/19809-19999
UUAAAUAGGUCUUAUGUUGGU...GGAAUGU......................AUGUA..
..CAUUUCUG......AAAG..AGGAA.U.UC.G.G.UGC....................
...........GAUGCCGA.AACUGCCC.CC.GCAACUGUAA..GG.UG..........G
ACAAGAAUCGAGAUA.............................ACCACUGUACGUUUUU
AG.......................................................CGU
.AUGGGAAGGU...UCG..A.UU..GUUGGAUGA..........................
.........................................AGCC.AAGUCAGGAUACUC
GCCAAAUAAGACGGAAGCAAC
>Listeria_welshimeri_.2 AM263198.1/1157829-1158018
CGCAUUGCCGGGUACUAAAAAA..CUAAAUA......................GGUGA..
..AUAUAUUA......AUCC..GGGAA.A.GA.G.G.UGA....................
...........AAAUCCUC.UACAGGCC.CUAGCUACUGUAA..UA.C...........G
GACGAAAGCCAAAUAGAC..........................GUCACUGGAA.GAAA.
..........................................................UU
.CCGGGAAGAC...UGG..U.GA..GUAGGAUGAU.........................
..........................................GUU.AAGUCAGGAGACCG
CUUUUAUAUUCGAUAUCCAAA
>Paenibacillus_larvae.1 AARF01000099.1/15166-14989
CUGAUAAAAAUUGAAUAGAAAA..CUGGG...............................
.....UAGAG......AUCA..GGGAA.A.GA.G.G.UGC....................
...........GAUUCCUC.UACAGGCC.CUAGCUACUGUGA..AG.CG..........G
ACGAAAUCCCCUUGAU............................GUCACUGGAA..CAU.
..........................................................UU
.CCGGGAAGGC...GGG..A.AA..CUAGAAUGA..........................
.........................................UGCA.AAGUCAGGAGACCU
CCUCUAUUCAGCCUAUGCAGC
>Paenibacillus_larvae.2 AARF01000375.1/31-230
UUGCAUAUUGUGGAGACAGGUG..CUUCGUCUGU...................AACGA..
..UGAAACUU......AAAA..GGGAA.GAUC.G.G.UGU....................
...........AAAUCCGU.CGCGGU.C.CC.GCCACUGUAA..CA.GA..........G
GAGCCUUGUGCCAGGCAAAC........................GCCACUGGUCUAAGA.
.........................................................UGA
.CUGGGAAGGC..GGCU..U.UA..AGGCGAUGAA.........................
.........................................UCUGGAAGCCAGGAGACCU
GCCUGUUCUAACGACACUGCU
>A.metalliredigens.1 CP000724.1/79239-79421
AGUACAUAGAAUACGUUAGGU...GUUUCAU......................AUGA...
.....AACUU......AAUU..GGGAA.A.GU.G.G.UGA....................
...........AAACCCAC.UGCAGCCC.CC.GCUACUGUAA..GU.GC..........A
GAUGAACUCGACAAAA............................GCCACUAGAU....C.
.........................................................AAU
.CUGGGAAGGC..GUCG..A.UA..GUAAGGUGAA.........................
.........................................GCAC.AAGUCAGGAGACCA
GCCUAAAGUAAGAAUCAGCCU
>A.metalliredigens.2 CP000724.1/3721369-3721186
GAUGAAUUAAAUCGAAUUGGU...GCUUUAU......................CAA....
.....AGCUU......AAUA..GGGAA.A.GU.G.G.UUG....................
...........AAAUCCAC.UACAGCCC.CC.GCUACUGUAA..GU.GA..........G
GAUGAGUCCAGCAAA.............................ACCACUGAUUGUGUC.
..........................................................AA
.UUGGGAAGGU..GCUG..G.GU..GUCAGAAGAA.........................
.........................................UCAC.AAGUCAGGAGACCU
GCCAACCCUAAUUCCAAACAA
>A.oremlandii.1 CP000853.1/1112785-1112962
AGUAAAUAAGAAGCAUUAGGU...UCUAA...............................
....AAGAUU......AAUA..GGGAA.A.UC.G.G.UUA....................
...........AAUUCCGA.UACAGCCC.CC.GCUACUGUAA..GU.GU..........G
UACGAAACCAACGGG.............................UCCACUGGAU..AAU.
..........................................................AU
.CUGGGAAGGU..GUUG..G.GA..GUAGGUUGAU.........................
.........................................CCAC.GAGUCAGGAGACCU
GCCUAAUUGCUUGUAUGAAGU
>A.oremlandii.2 CP000853.1/1037045-1037222
UGAAUAUCAAAGUAUUAGGGUU..CUCUA........................CUUA...
.....GAGAU......AUUA..GGGAA.A.UU.G.G.UGC....................
...........AAAGCCAA.UACAGCCC.CC.GCUACUGUAA..AC.AU..........G
GACGA.GUUCUAAAA.............................GCCACUGGAU..UUA.
..........................................................AU
.CUGGGAAGGC...AGA..A.....GGAGGAAGAA.........................
.........................................GUGU.GAGUCAGGAUACCU
AACUAAUACUUGGCAUGGUUU
>A.oremlandii.3 CP000853.1/373263-373442
CAAAUGAAUACAUUUUAUGGUU..CUUUCUU......................AUGA...
.....AAGCU......AAGA..GGGAA.A.GA.G.G.UGA....................
...........GAAACCUC.UGCAGCCC.CC.GCUACUGUAA..GC.A...........G
GACGAAAUUCCAAUAA............................ACCACUGUGU......
..........................................................AA
.AUGGGAAGGU..AGGA..A.GA..GUAGGAAGAG.........................
..........................................UGC.AAGCCAGGAGACCU
GCCAUAAAACGUGAAUGAAGC
>A.metalliredigens.3 CP000724.1/1570726-1570905
ACAAAAAAUAGCUUAUAAGGUG..CUCUUUC......................AUA....
.....GAGUU......AAAA..GGGAA.A.GU.G.G.UGU....................
...........AAAUCCAC.UACAGCCC.CC.GCUACUGUAA..AU.GG..........G
UAUGAAAUCCGCGAAU............................GCCAUUGG...GAAA.
............................................................
.CCGAGAAGGU...CGG..A.GA..GUAAGAUGAU.........................
.........................................CCAU.AAGUCAGGAAACCU
GCCUUAUAUUGUUAUAAAACG
>A.metalliredigens.4 CP000724.1/86468-86650
AAAACUGAAUAUAUUUUAGGU...GUUUCAC......................GUGA...
.....AGCUU......AAUU..GGGAA.A.AU.G.G.UGA....................
...........AAAUCCAU.CACAGCCC.CC.GCUACUGUAA..AU.GC..........A
GAUGAAAUCGAUGAAG............................UCCACUGGA..UUUU.
...........................................................U
.CUGGGAAGGA..AUCG..A.GA..GUAAAAGGAA.........................
.........................................GCAU.AAGUCAGGAGACCA
GCCUAAAGACCAGUAACUACC
>A.oremlandii.4 CP000853.1/2361990-2361811
CAAAUUAAAUAGUUUUAAGGU...CUUUAGA......................AUAU...
....AAAGUU......AAAA..GAGAA.A.GA.G.G.UUC....................
...........AAUUCCUC.UACAGCCC.CC.GCUACUGUAA..UC.AG..........G
UAUGAAAUCUUCAAA.............................UCCACUGG...GAAA.
............................................................
.CCGGGAAGGG...AAG..A.UA..GUAAGUCGAU.........................
.........................................CUGU.AAGUCAGGAGAACU
GCCUUAAAAAUAAGAAUCACA
>Clostridium_tetani_E.1 AE015927.1/769982-770164
UUUAAUAUUAUUUUAUUAGGUG..CUUUA...............................
....CAAGUU......AAAA..GGGAA.A.GU.G.G.UGA....................
...........AAAUCCAC.UGCAGCCCACC.GUUACUGUAA..UG.CU..........G
ACGAAAUCUUAUAAAA............................UCCACUAGAUAUAUUU
.........................................................UAU
.CUGGGAAGGU...UAG..A.AA..UUAGGAAGA..........................
.........................................AGCU.AAGCCAGGAAACCU
GCCUAAUAAGUGUUAAUUCUU
>Clostridium_tetani_E.2 AE015927.1/793388-793200
AAUAGUAAAUGAAAUUUAGGUG..UCCACUUUGUA..................AAAAU..
..GAUGGAUG......AAAA..GGGAA.U.GU.G.G.UUC....................
...........AAUUCCAC.AGCAGCCC.CC.GCUACUGUAA..UA.GA..........U
GACAAGCCUUUAGUA.............................ACCACUCUUU....A.
.........................................................AAA
.GGAGGAAGGU...AAA..G.GU..UAGAAUGAU..........................
.........................................UCUU.AAGCCAGGAGACCU
GCCUAGAUUGUUAAAAUCCUC
>Clostridium_tetani_E.3 AE015927.1/745345-745529
UGAAUAUGAAAAUAUUCAGGU...GCCAU........................UUUA...
.....GGUUU......AAAA..GGGAA.U.GU.G.G.UUU....................
...........AAUUCCAC.AGCAGCCC.CC.GCUACUGUAA..UU.GA..........G
GACGAAUCUUUCACAA............................ACCACUCUUUCAAAAA
G........................................................GGA
.AGGGGAAGGG...AAA..G.AC..AAGGGUGAA..........................
.........................................UCAU.GAGCCAGGAGACCU
GCCUGUAUAUGAAAGAUAAAC
>Clostridium_tetani_E.4 AE015927.1/2416636-2416459
AUUUAAUAUUAGAUUUUAGGU...GUGAU........................CUUAU..
..AAUUACUU......AAAA..GAGAA.A.GU.G.G.UGA....................
...........AAAUCCAC.UACAGCCC.CC.GCUACUGUAA..UA.G...........U
GGACGAUUCCUAUUA.............................UCCACCAGUU......
..........................................................AA
.CUGGGAAGGA...AGG..A.UA..AGGAAGAAA..........................
..........................................CUA.AAGUCAGGAGAACU
GCCUAAAAUAUAUUACUUCGG
>Clostridium_difficil.1 ABKL02000008.1/4023-4215
UAAAUAUAUAAUAUUAUAGGU...UCUUCAA......................GCA....
.....AGAUU......AAUA..GGGAA.A.AA.G.G.UUA....................
...........AAUUCCUU.UACAGCCC.CC.GCUACUGUGA..UG.C...........A
GACGAAACUUUUGUUA............................GCCACUAUGAUGAUAU
UUUUUAUAU................................................CUC
.AUGGGAAGGA...AGA..G.GA..UUAGGAAGAA.........................
..........................................GCU.AAGUCAGGAGACCU
GCCUAAAAUAUUAAAGUAAUU
>C.botulinum.1 ABDP01000007.1/7251-7432
AUUUAAUAAAAAGAUUUAGGUG..CCUUUAC......................AUAA...
....AAGGUG......AAAA..GGGAA.U.GU.G.G.UAA....................
............AAGCCAC.AGCAGCCC.CC.GCUACUGUAA..UU.GA..........G
GACAAAUCUUUCAUAA............................ACCACUCUUU....A.
.........................................................AAA
.AGGGGAAGGG...AAA..G.AU..UAGGAUGAA..........................
.........................................UCAU.GAGCCAGGAGACCU
GCCUAGAUUUUUAUUAGGGAA
>Clostridium_tetani_E.5 AE015927.1/823404-823586
UUAAAUAUUUAUUUAUAAAGU...UUCUU........................GUAAA..
..AGAGAAUU......AAAA..GGGAA.G.GA.G.G.CGA....................
...........AAAUCCUC.CACGGU.C.CG.GCCACUGUAA..UU.GG..........U
GAGUUUAUUCCAUAA.............................GCCAUUGAGA..UAU.
..........................................................UC
.UUGAGAAGGC...GGA..A.AU..AAAUGAUGAA.........................
.........................................CCAU.AAGUCAGGAGACCU
GCUUUAUAAGAAUAAAUAUAC
>Clostridium_botulinu.1 ABDO02000001.1/974410-974591
AUUUAAUAAAGAAAUUUAGGUG..CCUUU........................GUAGU..
..AAAAGGUG......AAAA..GGGAA.U.GU.G.G.UAA....................
............AAUCCAC.AGCAGCCC.CC.GCUACUGUAA..UU.GA..........A
GACAAAUCUUUCAUAG............................GCCACUCUUU......
.........................................................AAA
.AGGGGAAGGG...AAA..G.AU..UAGGAUGAA..........................
.........................................UCAU.GAGCCAGGAGACCU
GCCUAGAUUUUUAUUAGGAAA
>Clostridium_perfring.1 ABDX01000004.1/114276-114455
UAAUAUUUUAUAUUUUUAGGU...UUGAU...............................
...UUUAAUU......AAAA..GGGAA.A.GU.G.G.UUA....................
...........AAGUCCAC.UACAGCCC.CC.GCUACUGUGA..UA.GG..........A
UACAAGUUUCUAUUUG............................ACCACUGAUUAUAUA.
..........................................................AA
.UUGGGAAGGG...AGA..A.AU..GAGGAUAAG..........................
.........................................CCUU.AAGUCAGGAUACCU
GCCUAAAGAUCAUGAACUAAG
>C.novyi.1 CP000382.1/1272358-1272535
AAAUUAAAUAAGUCAUUAGGUG..CUCUAUU......................AUAA...
.....GAGGU......AAAA..GGGAA.A.GU.G.G.UUA....................
...........AAAUCCAC.UGCAGCCC.CC.GCUACUGUAA..AU.GA..........G
GAUGAAAUCUAAAUU.............................GCCA....UCCAUAA.
.........................................................GGA
.....GAAGGU...UAG..A.AA..GUAAUAUGAU.........................
.........................................CCAU.AAGCCAGGAAACCU
GCCUAAUGUACGAUUAUUUAA
>C.novyi.2 CP000382.1/2263667-2263491
AAAUUGUAUAUUAGCUUAGGUG..UCUGA........................UUAAU..
..UUCAGGUG......AAAA..GGGAA.U.AC.G.G.UGA....................
...........AAAUCCGU.AACAGCCC.CC.GCUACUGUAA..UG.UG..........G
ACAAAUCU.....AAA............................ACCACUGGUU..UAU.
..........................................................AA
.CCGGGAAGGA........A.GA..GGAGGAUGA..........................
.........................................AACU.AAGUCAGGAGACCU
GCCUAAGCUUUGGAUAAAGAC
>Clostridium_tetani_E.6 AE015927.1/793516-793697
GAAUAUUAAAAUUUAUAGAGUU..ACCCAUU......................UUUG...
.....GGGUU......AAAA..GGGAA.G.GG.G.G.UUA....................
...........GAAUCCUC.CACGGU.C.CG.GCCACUGUAA..UU.GG..........U
AAGUUUAUUCCAUAA.............................GCCAUUGAGA..UAU.
..........................................................UC
.UCGAGAAGGU...GGA..A.AU..AAAUGAUGAA.........................
.........................................CCAU.AAGUCAGGAGACCU
GCUUUAUAUUUAAGAUGCAGC
>Symbiobacterium_ther.1 AP006840.1/2078690-2078498
AAUACGGGCACAGCGGCAGGUG..CUCCCGGCCCCG.................CGCUC..
..CGGGAGUU......AAAA..GGGAA.G.CC.G.G.UGC....................
...........AAGUCCGG.CACGGU.C.CC.GCCACUGUGA..CG.G...........G
GAGCCGUCCCCACGAUGC..........................GCCACUGGCC.GGAA.
..........................................................GG
.CUGGGAAGGC...GGG..G.GA..AGGCGAUGAU.........................
..........................................CCG.AAGUCAGGAGACCU
GCCUGUCGCUGCAACGUCACU
>Symbiobacterium_ther.2 AP006840.1/2074430-2074237
AUAGAGCAAACAGCGGCAGGUG..CUCCCGACCCU..................GCGGU..
..CGGGAGUU......AAAA..GGGAA.G.CC.G.G.UGC....................
...........AAGUCCGG.CACGGU.C.CC.GCCACUGUGA..CG.GG..........G
AGUCGCCCCUCGGGAUGU..........................GCCACUGGCC.CGAA.
..........................................................GG
.CCGGGAAGGC..GGAG..G.GG..CGGCGAGGA..........................
.........................................UCCG.GAGUCAGGAAACCU
GCCUGCCGCGCUGGCGCUGCU
>Symbiobacterium_ther.3 AP006840.1/361924-361720
UAUAUUGGGGUUGUGACCGGU...GCACCUA......................UCGG...
....GUGCUG......AAAA..GGGAA.C.CC.U.G.UGC....................
...........GAAUCAGG.GACUGC.C.CC.GCAGCGGUGA..GC.AGG.........A
ACGACCGCCACAGCAA.............................GCACUGGGC..UCC.
.........................................................GGC
.CUGGGAAGC....GUG..G.CC..AGUAGGACAG.........................
...................GCGGCAGAUGGUGCCGCCCCGCCUGC.AAGUCCGAAGACCU
GCCGGUCAUCCGCUUUCAGGG
>Desulfitobacterium_h.1 AP008230.1/4379378-4379199
GAAUAUCAGGCGGAAUAGGGU...UGCUU........................AAAU...
.....GCAUU......AAUA..GGGAA.CUCC.G.G.UGU....................
...........GAAGCCGG.GACAGC.C.CC.GCUACUGUAA..GA.AG..........G
ACGAGUCCCUUAGAGGA...........................UCCACUGGU..GAAA.
...........................................................A
.CCGGGAAGGU...AAG..G.GA..UGAGGAUGA..........................
.........................................GUUC.AAGUCAGGAUACCU
GCCCCAUUCCGGAAACACAAG
>Desulfitobacterium_h.2 AP008230.1/3094247-3094065
AACAAUUUAAGGAUUUCAGGUG..CCCUUCG......................CCAA...
..GAAGGGAG......AAUA..GGGAA.C.CG.G.G.UGC....................
...........AAUUCCCG.GACGGA.C.CC.GCCACUGUAA..AG.AG..........G
AGUCUCAGCGCUGAAU............................GCCACUGGGU......
..........................................................AA
.CUGGGAAGGC..AGCA..A.GG..AGACAAUGA..........................
.........................................CUCG.AAGUCAGGAGACCU
GCCUGGAUCCGGGGACACAUG
>Thermoanaerobacter_t.1 AE008691.1/396055-396295
GAAUAUAAAAAGCCUUAUGGU...CCCGU...............................
..GAUGGGUU......AAAA..GGGAA.GACG.G.G.UGA....................
...........GAAUCCCG.CGCAGCCC.CC.GCUACUGUGA..GG.GA..........G
GACGAAGCCCUAGUAA............................GCCACUGUCCGGCACU
CAACUGAGCGCGUUAGUAAGGAGAAAAGAGGGAGAGAAAUUGCGUUCAGUUGAGUGCCGG
.AUGGGAAGGC...AGG..G.UG..GAGGAUGAG..........................
.........................................UCCC.GAGCCAGGAGACCU
GCCAUAAGGUUUUUAAAAGUU
>Thermoanaerobacter_t.2 AE008691.1/395133-395373
UGAAUAUUAAAGCCUUAUGGU...CCCAU...............................
..GAUGGGUU......AAAA..GGGAA.GACG.G.G.UGA....................
...........GAAUCCCG.CGCAGCCC.CC.GCUACUGUGA..GG.GA..........G
GACGAAGCCCUAGUAA............................GCCACUGUCCGGCACU
CAACUGAGCGCGUUAGUAAGGAGAAAAGAGGGAGAGAAAUUGCGUUCAGUUGAGUGCCGG
.GUGGGAAGGC...AGG..G.UG..GAGGAUGAG..........................
.........................................UCCC.GAGCCAGGAGACCU
GCCAUAAGGUUUUAGAAGUUC
>Moorella_thermoaceti.1 CP000232.1/1116483-1116660
CAAAUUUAAUAAACAACAGGUG..CCUGC...............................
....AGGGUU......AAAA..GGGAA.U.CA.G.G.UGU....................
...........AAAUCCUG.AGCGGU.C.GC.GCCACUGUAA..CC.GGG.........G
AGUUUUUCCUCAGAG.............................GCCACUGGUG..AUC.
..........................................................UA
.CUGGGAAGGC...GAG..G.AA..AAGUAAUGAG.........................
.........................................CCGG.GAGCCAGGAAACCU
GCCUGUUGGUUCAACCCUCGC
>Thermoanaerobacter_p.1 CP000924.1/1954621-1954429
GAAUACAAAAAAUCUUAUGGU...CUUGAG..............................
.....AAGUU......AAAA..GGGAA.A.GC.G.G.UGA....................
...........AAAUCCGC.UGCAGCCC.CC.GCUACUGUGA..GC.GA..........G
GAUGAAGCCCUAAUAA............................GCCACUGCUUGGCACU
CAAGAGAUGUGC.............................................CGG
.GUGGGAAGGC...AGG..G.UG..GAAGAUGAA..........................
.........................................UCGC.GAGCCAGGAGACCU
GCCAUAAGAUUUCGGAAGUUC
>Thermosinus_carboxyd.1 AAWL01000006.1/21090-20915
CAUAUGGCAAAGGGAAUAGGU...GCCUU...............................
...GCGGCUU......AAUA..GGGAA.GUCC.G.G.UGA....................
...........AAAACCGG.CACGGU.C.CC.GCCACUGUAA..UG.GG..........G
AGUCUGGCUGCGUUAU............................GCCACUGGA..GCAA.
...........................................................U
.CUGGGAAGGU...GCG..G.CU..AGCAAUGA...........................
.........................................ACCA.GAGUCAGGAGACCU
GCCUAUUCUAACACACACCGU
>Rhodopirellula_balti.1 BX294144.1/76053-76292
GCAACGUUACGUGGUGCCGGU...GUUCCAA......................AUCUUG.
..GAUCACUGGG....AACA..GGGAA.CUUC.G.G.UGA....................
...........GAUUCCGA.GACGGC.C.CG.GCCGCUGUAU..CC.GAU.........G
CGAAGUUGCUGACUUGGCAACUUCCAAGCAAACAUUCCUCUUGUGCCAUUGUCGUUGAUC
GGAAUUAUCCGUGA...........................................CGG
.ACGAGAAGGC...GAG..C.GU..UUGCGAGUUU.........................
......................................GCAUCGG.GAGUCAGAAGACCU
ACCACGAAACGGACACUAUGU
>Rhodopirellula_balti.2 BX294140.1/211185-211419
UCCGAGGUGACUGAUUUGGUUU..CUGCC........................GAGU...
.....CAGUG......AACA..GGGAA.CUCC.G.G.UGA....................
...........AAUUCCGG.GACGGU.C.CG.GCCGCUGUGU..GC.CGCCAG......A
GAUCUUCCAAGUGAAGUCUCAUUGUUUGCUUUUCUAUUCA....GCCAUUGCUCGUGUUU
UCGCGUUUCAACGUGAACG......................................UGA
.GUGAGAAGGC...CAU..G.AG..CAAACAAAGU.........................
.......................................GGUGGU.GAGUCAGAAGACCU
ACCUCGUACAAGACGUUUUGG
>Caulobacter_crescent.1 AE005673.1/502948-503176
GUCUGUUGCCGUUGUCGUGGU...CUGCGGACGUU..................CGCGU..
..CCGGAGCU......AAGA..GGGAA.G.UC.G.G.UGAGGGCGUGAAACCCU......
...........GAAUCCGG.CGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCGCUGUCCGUUUCGU..........................GUCACUGACGCGCCGA
AGCUGGUUCGGGGAU..........................................GCG
.UCGGGAAGGC.CAGGG..C.AG..GGGUGACGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUCGACAGAUAACGUCCUC
>Caulobacter.1 CP000927.1/2970294-2970494
AGUGCAGCUCUCGCGACAGGU...UCCUCGA......................AAGA...
.....GGAUG......AAAA..GGGAA.CUCG.G.G.UGU....................
...........GAAACCCG.GGCUGCCC.CC.GCAACUGUAA..GC.GGCG........A
GCCCGCGCGUCAUAA.............................ACCACUGGGAGCCUCC
UUCGGGAGG................................................CCU
.CUGGGAAGGC...GAC..G.CG..CACCGGCAUU.........................
......................................GACCCGC.GAGCCAGGAGACCU
GCCCGUCGCGGUCGUCCUUCG
>Caulobacter_crescent.2 AE005673.1/1924997-1925186
AGCUCUAGCUUCGCGUCAGGU...UCCUCGA......................AAGA...
.....GGAUG......AAAA..GGGAA.C.GA.G.G.UUG....................
...........AAGACCUC.GGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCUUCGCGUCACAU.............................GCCACUGGGCCCAAAA
.........................................................GGC
.CUGGGAAGGC...GAC..G.CC..CAGAAGCAUU.........................
......................................GACCCGU.GAGCCAGGAGACCU
GCCCGGCGCAGUCGUUCAUCG
>Parvularcula_bermude.1 CP002156.1/2306524-2306337
GCCAUUCAGCGAAGAGAUGGUU..CCGUG........................AGAGA..
..UCACGGCG......AAGA..GGGAA.C.CC.G.G.UGG....................
...........CAAUCCGG.GGCUGUAC.CC.GCAACUGUGA..GC.CAG.........G
AGCUGACAACCGAUAC............................ACCACUGGAG.GAAA.
..........................................................CU
.CCGGGAAGGG...GGU..U.GG..AAGCGAUGAU.........................
.........................................CGGU.GAGCCAGGAGACCU
GCCAUCGCGUCGUUCGUCCGG
>Bradyrhizobium.1 CP000494.1/6305642-6305856
ACCUACUGUGAUGGUGACGGU...GCCCC........................CUGAC..
..CGGGGCUC......AAAA..GGGAA.U.GC.G.G.UGCCGGACGUCCUUAACGGAUCG
UUCG.......AAGGCCGC.AGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAAUCUCACGUCAGAU............................GCCACUGGGAAUUCUC
G........................................................GUC
.CUGGGAAGGC..GGCG..U.UG..AGGUGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>B.japonicum.1 AF306632.1/382-181
GAUAAUCCAAGUCGUCGAGGUU..CUCCGGUUCCCA.................UUGAU..
..CCGGAGCU......AAGA..GGGAA.G.CC.G.G.UGC.........A..........
...........AAUGCCGG.CGCUGC.C.CC.GCAACUGUAA..GU.GGC.........G
AGCCGCUGUCCAACGAU...........................GUCACUGAAGCCUGCA
CG.......................................................GCU
.UCGGGAAGGC..CGGA..C.AG..CAGCGAUGAC.........................
.........................................CAGC.AAGCCAGGAGACCG
GCCCCGACAAUAUAUUGGUCC
>Bradyrhizobium_japon.1 BA000040.2/5279689-5279475
CGUAGAUUGAUCGGUGACGGU...UCUCCGC......................ACGG...
.....AGAUC......AAAA..GGGAA.C.GU.G.G.UGCGAGAUUGUCCCAAUGCCGGG
AUUGUCCC...AACGCCAC.GGCUGCCC.CC.GCAACUGUAA..GC.GGU.........G
AAUCUUUCGUCAUAU.............................GCCACUGGGAAUCUCG
.........................................................GUC
.CUGGGAAGGC...GAC..G.UA..AGGUAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>Bradyrhizobium_japon.2 BA000040.2/3634102-3634304
AUCCUAGAUGCUCGCGACGGUU..UCCCCCG......................AGAG...
....GGGAUG......AAAA..GGGAA.U.GC.G.G.UGCGGGGAUGUUUCCCC......
...........AAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........A
UAAUCCUUCGUCAGAA............................GCCACUGGGUCCUCG.
.........................................................GUC
.CCGGGAAGGC..GACG..A.AG..UGGUGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>Bradyrhizobium.2 CU234118.1/5111792-5111599
CCGUAUCUAACAGAUGACGGU...UCUCCGA......................AAGG...
.....AGAGA......UUUA..GGGAA.C.AC.G.G.UGCGGGUCUUCGACCC.......
...........CAAGCCGC.GGCUGCCC.CC.GCAACUGUAA..UC.GGC.........G
AGUGUGAGGCCAAGAC............................ACCACUGG...GCAA.
............................................................
.CCGGGAAGGU...GGU..C.UC..ACGCAGCGAC.........................
.........................................CCGA.GAGCCAGGAGACCU
GCCGUCGACAUUGCUGUUGGC
>Bradyrhizobium.3 CP000494.1/6303139-6303357
ACCUACUGUGAUGACGACGGU...GCCCC........................AUAAC..
..CGGGGCUC......AAAA..GGGAA.U.GC.G.G.CGCCGGACGCGUCUCGCGAGGGA
CAUGAUCG...AAGGGCGC.AGCUGUCC.CC.GCUCGUGCAG..GC.GG..........C
AAAUGACGCGUCAUAG............................GCCACUCGGAAAUCCU
G........................................................GUC
.CCGGAACGAC..GUCA..U.GG..CGGCUAUGAC.........................
.........................................ACGC.GAGCCAGGGCACCC
GCCGUCAGCGGUGGUCACACG
>Bradyrhizobium.4 CP000494.1/3290341-3290534
CGUAUCUAACAGGAUGACGGU...UCUCCGA......................AAGG...
.....AGAGA......UUUA..GGGAA.C.AC.G.G.UGCGGGUUCUGAACCC.......
...........AAGGCCGU.GGCUGCCC.CC.GCAACUGUAA..UC.GGC.........G
AGUGUGAGGCCAAGAC............................ACCACUGG...GAAA.
............................................................
.CCGGGAAGGU...GGU..U.UC..ACGCAGCGAC.........................
.........................................CCGA.GAGCCAGGAGACCU
GCCGUCGACAUUGCUGUUGGC
>Bradyrhizobium_japon.3 BA000040.2/3617290-3617510
AAAUGGUGGCCCGGCGUUGGUU..CCUGUCC......................UAUG...
...ACAGGCG......AAGA..GGGAA.U.GC.G.A.UAGGGUCCGAAUCGGCAAGAUUU
GGGUCCA....AAAU..GC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGAUGCCC....GAG............................GCCACUGAUCCCUGAC
G........................................................GGA
.UCGGGAAGGC.....G..G.GG..AUCGAAGGGC.........................
..............................AAAACCCUGCUCCGC.AAGCCGGGAGACCU
GCCAGCGCGGACGAUUUUGGA
>Nitrobacter_winograd.1 CP000115.1/3122671-3122449
ACUAAAUAUAGUGGCCAAGGU...CUCUCGAGUCGC.................AACAC..
..CGAGAGCU......AAGA..GGGAA.G.CC.G.G.UGCGUCUCGGUCCGUGAUCCGGG
C..........AAGGCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCGAAGUCCACUUGAGU.........................GUCACUGGGGCUGCAA
G........................................................GCU
.CUGGGAAGAC..CGGA..C.CG..AUGCCUGGAC.........................
.........................................CCGC.AAGUCAGUAGACCU
GCCGUGGCAAAAAAAGAAUGU
>Nitrobacter_hamburge.1 CP000319.1/4110955-4110750
CUUGUUUGGGAGAUCAUCGGUG..CCUCCCG......................CGGG...
.....AGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGGGAUACUGCCCCC.....
...........AAUACCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
CAUCCGUAUCCAUUCG............................GCCACUGACCAUGCCA
UGCA.....................................................UGU
.GCGGGAAGGC...GGA..U.CC..GGAUAACGG..........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGGUGACGCAUUCUUAGGC
>Nitrobacter_hamburge.2 CP000319.1/4032968-4032764
CCAUAGGUUGGUUGUCGAGGUU..CUCCGGGUAUU..................CAUGC..
..UUGGAGCU......AAGA..GGGAA.G.CC.G.G.UGCGCUCUUGAGC..........
...........AAGACCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGU.........G
AGCCGUGGUCCAUCAU............................GCCACUGGGU.GUUG.
..........................................................UC
.CCGGGAAGGC..CGGA..C.CA..AAGCUGAGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCCCGGCAACAUAGUCGUCC
>Nitrobacter_winograd.2 CP000115.1/2411796-2412010
CCCAAACAGAUCGGCGACGGU...UCUCCCU......................UGGG...
.....AGAUC......AAAA..GGGAA.C.GU.G.G.UGCGGGAUCAUCCUAACACCGGG
AUCAUUCC...AACGCCAC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAAUCUGCGUCACAC.............................GCCACUGGGACAUCUC
G........................................................GCC
.CCGGGAAGGC...GAC..G.UC..AGGUAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAACCCGUGGUCACAC
>Nitrobacter_hamburge.3 CP000319.1/2878648-2878845
UUCUAAAUGACCGGCGACGGU...UCUCCCU......................CGGG...
.....AGAUC......AAAA..GGGAA.C.GU.G.G.UGCGGGAUCAUCCU.........
...........AACGCCAC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAAUCUGCGUCACAG.............................GCCACUGGGACAUCUC
G........................................................GCC
.CCGGGAAGGC...GAC..G.CC..AGGUAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAACCGUGGUCACACG
>Nitrobacter.1 AAMY01000005.1/65948-65727
ACUAGAUAUGGUAGCCACGGU...CUCUCGAGUCGU.................CGUAC..
..CGAGAGCU......AAGA..GGGAA.G.CU.G.G.UGCGCCUCGGUCCAUGAUCCGGG
C..........AAGGCCAG.CGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCCGAGUCCAAUUGAGU.........................GUCACUGGAACCGCAG
G........................................................GUU
.CCGGGAAGGC..CGGA..C.GG..ACGCUACGAC.........................
.........................................CCGC.AAGUCAGGAGAUCU
GCCGUGGCGGAAAGAACGUCC
>Nitrobacter.2 AAMY01000011.1/25797-25600
UCCAAACAGAUCGGCGACGGU...UCUCCUU......................CGGG...
.....AGAUC......AAAA..GGGAA.C.GU.G.G.UGCGGAAUCAUCCC.........
...........AACGCCAC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........U
GAAUCUGCGUCAUAC.............................GCCACUGGGAUAUCUC
G........................................................GCC
.CCGGGAAGGC...GAC..G.CC..AGGUAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAAACCGUGGUCACAC
>Nitrobacter_hamburge.4 CP000319.1/4033871-4034093
ACUAGAUAUGGUGGUCACGGU...CUCUCGAGUCGC.................AAAAU..
..CGAGAGCU......AAGA..GGGAA.G.CC.G.G.UGCGCCCGAGUCUUAAUGGCGGG
C..........AAUGCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCUGAAGUCCAUUAUUGU.........................GUCACUGGGACCGCAA
G........................................................GCC
.CUGGGAAGAC..CGGA..C.CG..ACGCCUAGAC.........................
.........................................CCGC.AAGCCAGUAGAUCU
GCCGCGACAACAAAAACGUCC
>Nitrobacter_winograd.3 CP000115.1/3123579-3123785
CAUAGGAUGGGGGGUCGAGGUU..CUCCGGGACGAUU................CACGC..
..CCGGAGCU......AAGA..GGGAA.G.CC.G.G.UGUGUCUUCGGAU..........
...........AAAGCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGU.........G
AGCCGUGGUCCAUCAU............................GCCACUGGGU.GUUG.
..........................................................UC
.CCGGGAAGGC..CGGA..C.CA..AAGCUGAGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCCCGGCAACAUAGUCGUCC
>Rhodopseudomonas_pal.1 CP000250.1/3635632-3635843
AAACAUCGCGCUGCCGACGGU...UCCUGUC......................UGCGG..
..ACGGGACG......AAGA..GGGAA.UAUC.G.G.AAGUCAUCAUCCAGACGCGGAUG
AUGGC......GGUGCCGA.AGCUGCUC.CC.GCAACUGUGA..AC.GG..........C
GAGCCAUCGCAACAC.............................GCCACUGGGC.AGAC.
..........................................................GC
.CUGGGAAGGC...UGC..G.UU..GGCCGUGAC..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUCGCCUGCUGAUUGACG
>Rhodopseudomonas_pal.2 CP000301.1/3897402-3897187
UGCGAUAGUUAACAUGAUGGUG..CCUCAAUCUCGAGUCUGCGUGAGUGGAUGCGAUC..
..UUGAGGAU......AAUA..GGGAA.C.AC.G.G.UGC....................
...........AAAACCGU.GACUGCCC.CC.GCAACUGUAA..GC.GG..........U
UAGCCUGUCGUCCGAU............................ACCACUGGGAAUUUCG
U........................................................UUC
.CUGGGAAGGU..GACG..A.UA..GGUCAGCGAG.........................
.........................................CCGC.GAGCCAGGAAACCU
GCCAUCGCACGAUCAAUUUCG
>Rhodopseudomonas_pal.3 CP000283.1/3256310-3256518
GAAGUCGCUUCAGCCUACGGUG..CCUCUCG......................UCGG...
...AGAGGUG......AAACU.GGGAA.U.GC.G.G.UGCGGCGAGAGAUCGCC......
...........AAUUCCGC.AGCUGCCC.CC.GCAACUGUGA..GC.GGAA........U
AGGUCCGGAUCAAACU............................GCCACUGAGCUUCGAA
GUGA.....................................................UGC
.UUGGGAAGGC...GAU..C.CG..GACAAUCU...........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGAAGGCGUUGUUCAACUC
>Rhodopseudomonas_pal.4 CP000283.1/714109-714317
CUUCUAUCGGCAUGUUCAGGUG..UGCCGGA......................GUCUU..
..CCGGCA...........CA.GGGAA.G.CC.G.G.UCCGGGCGCCUUUGGCGGCGCCU
...........CAAGCCGG.CGCUGCGC.CC.GCAACUGUAG..GC.GGC.........G
AGCGAUCCUUCAUCAU............................GCCACUGGGCCCGUCG
.........................................................GGU
.UCGGGAAGGC...GGA..G.GA..UUGCGACGAC.........................
.........................................CCGC.AAGUCAGGAGACCG
GCCUGAGCCACGUCAUCUUCC
>Rhodopseudomonas_pal.5 CP000301.1/4173480-4173288
GCUAGCGUUGCGAACGAUGGU...CCUUC........................CACGU..
..GGAAGGUG......AAAA..GGGAA.G.CC.G.G.UGCGAGCGAUUUC..........
...........AAACCCGG.CGCUGCCC.CC.GCAACUGUGA..GC.GA..........C
GAGCCCGCGCCGAG..............................GCCACUGGGA..UGU.
..........................................................UC
.CUGGGAAGGC...GGC..G.AG..GGGCUUUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCGUGAAGAGUGCUUUG
>Rhodopseudomonas_pal.6 CP000283.1/4855579-4855783
CAUCUAGAUGAUUGUGACGGU...UCCCCUU......................CCGG...
.....GGAUC......AAAA..GGGAA.U.GC.G.G.UGCGGACCUCUUCGGAGGACC..
...........AAUGCCGC.AGCUGUUC.CC.GCAACUGUAA..GC.GGU.........U
CGACUUUCGUCGGAAU............................GCCACUGGGAAACUCG
.........................................................GUC
.CUGGGAAGGC...GAC..G.AA..AGCUAACAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAUUCGUGGUCACACG
>Rhodopseudomonas_pal.7 CP000283.1/2593935-2594143
CUGUUGUCGCGCAUCUUCGGUG..CCCUUCG......................UCGG...
...AAGGGUG......AAAC..GGGAA.U.GC.G.G.UGAGGCGAGUGAUCGCC......
...........CAAUCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
UGUCUUCGGUCACAUGC...........................GCCACUGAGUUCGGCA
CCAGC....................................................CGC
.UCGGGAAGGC...GAU..C.AG..GACAACAU...........................
.........................................CCGC.AAGCCAGGAGACCG
GCCGAAGACCGUAGCAACGCC
>Rhodopseudomonas_pal.8 CP000283.1/785607-785805
GAUACGGUGAACAUCGACGGU...UCCCG........................CAAG...
.....GGAUC......AAUA..GGGAA.U.GC.G.G.UGAGGAUUCUCGCGAAUCC....
...........AAUUCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCUUUCGCCAAGC.............................GCCACUGGGCUUCGA.
..........................................................GC
.CUGGGAAGGC...GGC..G.AA..AGGCAGCGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCGUCGUGGUCACACGC
>Rhodopseudomonas_pal.9 CP000283.1/2591234-2591019
CAAACAUCACGCGCCGAUGGUG..UCCCGUC......................UUUGG..
..ACGGGACG......AAAA..GGGAA.UGCC.G.G.AAGUCGCUGCCCGCAUUGAUGCG
AGCAAGAC...CGAGCCGG.AGCUGCCC.CC.GCAACUGUAA..AC.GG..........C
GAGCCGACGCAACAC.............................GCCACUGGAU.GUUU.
..........................................................CU
.CCGGGAAGGC...UGC..G.CC..UGCGACGAC..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCAUCGCCUGCUGUGUUGAC
>Rhodopseudomonas_pal.10 CP000250.1/5294881-5295084
CUUUUAGUUGUAGGCGACGGU...UCCUCUC......................CGGA...
.....GGAUC......AAAA..GGGAA.U.GC.G.G.UGCGGGUGCCUUCGGAAACCC..
...........AACUCCGC.AGCUGUUC.CC.GCAACUGUAA..GC.GGU.........U
CGACUUUCGUCGGAAU............................GCCACUGGGAAACUCG
.........................................................GUC
.CUGGGAAGGC...GAC..G.GA..AGGUAACC...........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAUCCGUGGUCACACG
>Rhodopseudomonas_pal.11 BX572600.1/273933-274129
CAUAGUGAUCGCCGUCGAGGUU..CUUCGGGCACGA.................UCGUC..
..CCGAAGCU......AAGA..GGGAA.G.CC.G.G.UGC....................
...........AAGGCCGG.CGCUGCCC.CC.GCAACUGUUA..GC.GGU.........G
AGCCGACGUUCAGCAAA...........................GCCACUGGGA.GCGA.
..........................................................UC
.CCGGGAAGGU..CGAA..C.AA..AGGCGAUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCUCGUCGAACGAAACGUCC
>Rhodopseudomonas_pal.12 BX572595.1/86162-86360
GCUAGCGUGCCAAGCGAUGGU...CCUUCCG......................UCAG...
...GAAGGUG......AAAA..GGGAA.G.CC.G.G.UGGGAGGCGCGGUGCGUCUC...
...........GAUCCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GA..........C
GAGCCAUUGCCGAG..............................GCCACUGGGA....A.
.........................................................UUC
.CUGGGAAGGC...GGC..G.AA..UGGCGGCGAC.........................
.........................................UCGC.GAGCCAGGAGACCU
GCCAUCGCGUAUUGUGCUUUG
>Rhodopseudomonas_pal.13 CP000463.1/2468338-2468530
GCUAGCGUCGCCACCGAUGGU...CCUUCCG......................UUUG...
...GAAGGUG......AAAA..GGGAA.G.CC.G.G.UGCGAGUUCGCUC..........
...........CAUUCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GA..........C
GAGCCAUCGCCGAG..............................ACCACUGGG..GCAA.
...........................................................C
.CUGGGAAGGC...GGC..G.AG.AGGGCGGCGAC.........................
.........................................UCGC.GAGCCAGGAGACCU
GCCAUCGCGGACUGUGCUUUG
>Rhodopseudomonas_pal.14 CP000301.1/3909916-3909716
UACAAUAUAUAGUGUUACGGUC..UCCACAUGUUAC.................AUCAU..
..GUGGGGCU......AAGA..GGGAA.G.CC.G.G.UGU....................
...........GAAUCCGG.AGCUGCCC.CC.GCAACUGUCA..GC.GGC.........G
AGCCGCCGUCCAGCGAU...........................AUCACUGAUGCCGCAA
G........................................................GUG
.UUGGGAAGAU..UGGA..C.GG..AAGCUGUGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUAGCAACGUGAAACGUC
>Rhodopseudomonas_pal.15 CP000250.1/820695-820904
CUCCUAUCGAACCGUUCAGGUG..UGCCGGGA.....................GUCUC..
..CCGGCA...........CA.GGGAA.G.CC.G.G.UCCGGGCGCCUCAGGCGGUGCCC
...........CAAGCCGG.CGCUGCGC.CC.GCAACUGUAG..GC.GGC.........G
AGCGAUCCUUCAUCAU............................GCCACUGCGCCGAUCG
.........................................................GGC
.GCGGGAAGGC...GAG..G.GA..UUGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCG
GCCUGAGCCACGUCAUCUUCC
>Rhodopseudomonas_pal.16 CP000250.1/112481-112283
AGUACGGUCGCGCCCGACGGU...UCCCG........................CAAG...
.....GGAUC......AAUA..GGGAA.U.GC.G.G.UGAGGGUCGCGCGCGAUCC....
...........GAUUCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCUUUCGCCACAC.............................GCCACUGGGCCUCGU.
..........................................................GC
.CUGGGAAGGC...GGC..G.AA..AGGCACGGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCGUUCGUGGUCACACG
>Rhodopseudomonas_pal.17 CP000283.1/3260113-3259915
UUAACCGGCCGCAGUACCGGUG..CCUCUCG......................AAGG...
...AGGGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGGACGCUUGUCCC......
...........AAUGCCGC.AGCUGCCC.UC.GCAACUGUGG..GC.GG..........A
UCGGAGUGUCCUUGAC............................GCCACUGGCC..AAU.
..........................................................GG
.CCGGGAAGGC...GGA..C.GC..UCCAAAGAU..........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGGUACCUCUGAAAGAACU
>Rhodopseudomonas_pal.18 CP000463.1/4804452-4804231
GUUGGUGAGCACUGCCGAGGUU..CCCUGCUGCAGGCG...............UUUCA..
..GCAGGGCU......AAGAC.GGGAA.G.CC.G.A.UGGCGCUCGCGUUGAGCG.....
...........GAAUUCGG.CGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCGGCGGUUCGAUGGGU..........................GUCACUGGCGUUUACG
AA.......................................................GCG
.CUGGGAAGGC.UAGAA..C.CG..UCGCGACGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUUUGGCGUGAUGACGUUC
>Rhodopseudomonas_pal.19 BX572599.1/259196-259407
UGUGGUGCCGCUCGCUUCGGUG..CCCUUCG......................UUCG...
...AAGGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGCGAGCAAUCGCC......
...........AAGUCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
CGUCUCCGGUCACUCC............................GCCACUGAGUUCGGCA
UCCUAGAGC................................................CGC
.UCGGGAAGGC...GAC..C.GG..GACAAUGU...........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGAAGUCCGCAACCAAGCC
>Rhodopseudomonas_pal.20 CP000250.1/3754381-3754174
UCUGUUUGCCAUGCCUUCGGUG..CCUCUCG......................AAAG...
...AGAGGUG......AAACA.GGGAA.U.GC.G.G.UGCGGCGAGCUUUCGCC......
...........AAUUCCGC.GGCUGCCC.CC.GCAACUGUAG..GC.GGA.........U
CGUCCGCGAUCAAGCU............................GCCACUGAGCGAUCGU
UUUG.....................................................CGC
.UCGGGAAGGC...GAU..C.CG..GACCAUAU...........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGCAGGCAAUCGUCCACUU
>Rhodopseudomonas_pal.21 BX572599.1/247113-247314
UUAACCCGAGGUUGUACCGGUG..CCUCUCG......................CCGA...
..GAGAGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGGGCGAUGCCCC.......
...........AAUGCCGC.AGCUGCCC.UC.GCAACUGUGG..GC.GG..........A
UCGGAGCGUCCUCGCAU...........................GCCACUGACCAGAUC.
..........................................................GG
.UCGGGAAGGC...GGA..C.GC..GCCGGAUAU..........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGGUACAAGGUGUGCAACU
>Rhodopseudomonas_pal.22 CP000463.1/3487850-3487645
UUUCGUUCGGUCAUCUUCGGUG..CCCUUGU......................UCGG...
...AAGGGUG......AAAC..GGGAA.U.GC.A.G.UGCGGCGAGCAAUCGCC......
...........AAAGCUGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
UGUCCGCGAUCACUAA............................GUCACUGAGGCGAGUU
UCG......................................................GCC
.UUGGGAAGAC...GAU..C.GG..GACCGUAU...........................
.........................................CCGU.GAGCCAGGAGACCG
GCCGAGGAUUUGUCGCAAUGC
>Rhodopseudomonas_pal.23 CP000463.1/575538-575326
GACCUAGAUGGCCGCGACGGU...UCUUCGC......................AAGA...
.....AGAUC......AAAA..GGGAA.C.GC.G.G.UGCGGGGCCUCCCACUUGGAAUG
GCCCC......UAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........U
UAGUCUUUCGUCUGAU............................GCCACUGGGUGCUUCG
.........................................................GUC
.CUGGGAAGGC..GACG..G.AA..GGUCAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCGAUCGUGGUCACACG
>Rhodopseudomonas_pal.24 CP000463.1/3532969-3532758
UCAUAAGUUAGCCAUCGUGGUU..CUGCGGGCAAGU.................CGUGC..
..CCGGAGCU......AAGA..GGGAA.G.CC.G.G.UGCGGCGCAAGCC..........
...........AAGGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCGCUGUCCAACAAU...........................GUCACUGGGACCGAUG
AG.......................................................GUU
.UCGGGAAGGC..CGGA..C.AG..CAGCGUUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCACGAUGAAAUUCAACGUC
>Rhodopseudomonas_pal.25 BX572596.1/50556-50756
UCUGGUUUUGACGUCUUCGGUG..CCUCGCG......................UGCG...
.....AGGUG......AAACU.GGGAA.U.AC.G.G.UGCGGUGUUUUUCACC.......
...........UAAUCCGU.AGCUGCCC.CC.GCAACUGUAG..GC.GGA.........U
CUGUCCGGAUCAUGUA............................GCCACUGACGUCCUCG
.........................................................GCG
.UCGGGAAGGC...GGU..C.CA..GGCGAUAU...........................
.........................................CCGU.GAGCCAGGAGACCG
GCCGAAGACGGGAAGCAUCUA
>Rhodopseudomonas_pal.26 CP000463.1/2461809-2461608
ACAUACUCUGGUGCCGAUGGU...UCCCAAA......................AUAU...
....GGGAUG......AAAA..GGGAA.U.CC.G.G.AGCGUUGCCCGAGAUGGGCCGC.
...........GACACCGG.AGCUGCCC.CC.GCAACUGUGA..CC.GG..........A
GAGCCGCCACCAAAU.............................GCCACUGGAU..UUC.
.........................................................GAU
.CCGGGAAGGC...GGU..G.CC..GGCUGUGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCGCCUGUGACUGACGC
>Rhodopseudomonas_pal.27 CP000301.1/3914520-3914312
GCUACAUGUAGAUGUCACGGU...CCCUCGAAUCGC.................AAGAU..
..CGGGGGCU......AAGA..GGGAA.G.CC.G.G.UGCGGCGCGAGCC..........
...........AAAGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GGU.........G
AGCCGACGUCCAGCCUUU..........................GUCACUGAGGCCGAAA
.........................................................GCC
.UCGGGAAGAC...GGA..C.CG..AAGCGACGAU.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGCGACAACAGAACGUCUU
>Rhodopseudomonas_pal.28 CP000463.1/3487953-3488157
ACUAAAUGUUGCUGUCACGGU...CUCUCGAAUCGC.................UUGAU..
..CGAGAGCU......AAGA..GGGAA.U.CC.G.G.UGUGGCGAAAGCC..........
...........GAAGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCGACGUCACCGAGU...........................GCCACUGGGA.GCAA.
..........................................................UC
.CCGGGAAGGC...CGA..C.GA..AGGCAUUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGCGACAACGACUACGUCC
>Rhodopseudomonas_pal.29 BX572594.1/100625-100429
AAUACCGUGACCAGCGACGGU...UCCCG........................AAAG...
.....GGAUC......AAUA..GGGAA.C.GC.G.G.UGCGGGCUUUAGGGCUC......
...........UAUUCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCAUUCGCCACAC.............................GCCACUGGGCUUUCG.
..........................................................UC
.CUGGGAAGGC...GGU..G.AA..CGGCAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGUCGUGGUCACACG
>Rhodopseudomonas_pal.30 CP000283.1/2565817-2565609
AGAAUACUCGCCUGUCACGGU...CUUUCGAGUCGUAUGUGCACG........CGAUC..
..CGAGAGCU......AAGA..GGGAA.G.CC.G.G.UGC....................
...........AAAGCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCUGACGUCCGAUAGUC..........................GCCACUGGGCCCAUUG
.........................................................GAC
.CCGGGAAGGC..AGGA..C.UG..ACGCUAAGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
ACCGCGACAGUCGCAAUCGUC
>Rhodopseudomonas_pal.31 CP000463.1/3491563-3491365
UUAAAGCGCUGCGUCACCGGUG..CCUCUCG......................CAAG...
...AGGGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGGACGAUGUCCC.......
...........CAAGCCGC.AGCUGCCC.UC.GCAACUGUAA..GC.GG..........A
UCACGACGUCCUUGAU............................GCCACUGGCC.GAUC.
..........................................................GG
.CCGGGAAGGC...GGA..C.GA..GCGAUACAU..........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGGUGACGUUGAGCCAACU
>Rhodopseudomonas_pal.32 CP000250.1/3754538-3754747
UCUUGUCGGAUCGUCUACGGUG..CCUCU........................CGCGA..
..GAGAGGUG......AAACA.GGGAA.U.GC.G.G.UACGGCGCGAAAGCGCC......
...........AAAGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
CGUCGCCGAUCACAUGC...........................GCCACUGAGUCCGCCA
AGACG....................................................GCC
.UCGGGAAGGC...GAU..C.GG..GACAACAU...........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGUAGAUUCGUGCAAUGCC
>Rhodopseudomonas_pal.33 BX572595.1/100553-100338
UUUGAUCGCGCCCGUUCAGGUG..UGCCGGGA.....................AUCGU..
..CCGGCA...........CA.GGGAA.G.CC.G.G.UGCGGGCCCAAGCUUAUGGCCGC
AAACCC.....AAAUCCGG.CGCUGCGC.CC.GCAACUGUGA..GC.GGU.........G
AGCGAUCCUUCAAUCG............................GCCACUGGGCAGCACU
.........................................................UGC
.CCGGGAAGGC...GAA..G.GA..UUGCGACGAC.........................
.........................................CCGU.GAGCCAGGAGACCG
GCCUGAGUACGUCAUCUUCCA
>Rhodopseudomonas_pal.34 CP000301.1/4737279-4737476
UUAAACGCCGCGGUCGUCGGUG..CCUCUCG......................CAAG...
...GGAGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGGACGAUGUCCC.......
...........AAGGCCGC.GGCUGCCC.UC.GCAACUGUAU..GC.GG..........A
UCGAGACGUCCAACAU............................GCCACUGGCC.GAUC.
..........................................................GG
.CUGGGAAGGC...GGA..C.GA..GGAGAUAU...........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGGCGACGUCGAUCUUACG
>Rhodopseudomonas_pal.35 CP000283.1/3256000-3255793
GUGCGCGCAUCGACCUUCGGUG..CCCUUCUU.....................GGAA...
.....GGGUG......AAAC..GGGAA.U.GC.G.G.UGCGGCGAGCAAUCGCC......
...........UAGUCCGC.AGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
CGUCUCCGGUCAAAUGC...........................GCCACUGAGUUCGGCU
UCAGC....................................................CAC
.UUGGGAAGGC...GAU..C.GG..GACAUUCU...........................
.........................................CCGC.GAGCCAGGAGACCG
GCCGAGGGUCGUUUUGGAUGC
>Rhodopseudomonas_pal.36 CP000250.1/834289-834069
GCUAGCGUGGCCGGCGAUGGU...CCUUC........................CGCGA..
..GGAAGGUG......AAAA..GGGAA.U.CC.G.G.UGCGCGAACGCUCUGCAUUGAGC
GAUCUC.....AAUCCCGG.UGCUGCCC.CC.GCAACUGUAA..GC.GA..........C
GAGCCCGCGCCUCG..............................GCCACUGGGAUUCCUC
UAAGGA...................................................CUC
.CUGGGAAGGC...GGC..G.AC..AAGGGCAGCG.........................
.......................................ACUCGC.GAGCCAGGAGACCU
GCCAUCGCGAAUUGUGCUUUG
>Rhodopseudomonas_pal.37 CP000301.1/2063662-2063445
AUGCAGUCCAUAGCCGACGGUG..CCCUGUC......................CUCGG..
..ACAGGGCG......AAGA..GGGAA.UACC.G.G..GCGCCGGGUUAAGGGAUGGUCC
CUUAGGCCGGUGAAGCCGG.AGCUGCCC.CC.GCAACUGUGA..GC.GG..........A
CAGCCUGCACCGAAA.............................ACCACUGGGU..CUC.
.........................................................GAC
.CUGGGAAGGU...GGU..G.CC..GGCCAUGAC..........................
.........................................CCGC.GAGCCAGGAAACCU
GCCGUCGCCUGCGAUUUCGCC
>Rhodopseudomonas_pal.38 CP000283.1/727646-727425
GAUAGCGUGGCCGGCGAUGGU...CCUUCCG......................CCAG...
...GAAGGUG......AAAA..GGGAA.U.CC.G.G.UGCAAGUGAACUCUGUUCGAGUG
AUCUC......AAUCCCGG.UGCUGCCC.CC.GCAACUGUAA..GC.GA..........C
GAGCCCGCGCCUCG..............................GCCACUGGGAUUUCCU
GCUUGGAA.................................................AUU
.CUGGGAAGGC...GGC..G.ACAAGGGCGAUGAC.........................
.........................................UCGC.GAGCCAGGAGACCU
GCCAUCAUGAAUGGUGCUUUG
>Rhodopseudomonas_pal.39 BX572608.1/190529-190732
ACUUCUAAUGGCGGUGACGGU...UCCCG........................AGAG...
.....GGAUG......AAAA..GGGAA.U.AC.G.G.UGCGGACGCAGACACUUUCGCGU
UC.........UAGGCCGU.AGCUGUUC.CC.GCAACUGUAA..GC.GGA.........U
CGUCUUUCGUCGGAU.............................GCCACUGGGAACCUCG
.........................................................GUC
.CUGGGAAGGC...GAC..G.GA..AGAUCAA............................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAUUCGUGGUCACACG
>Rhodopseudomonas_pal.40 BX572599.1/256535-256331
CAAACAUCGCGCGCCGACGGUG..UCCUGUC......................UUCGG..
..ACAGGACG......AAGA..GGGAA.UAUC.G.G.AAGAUCGCUGCCUGCAGCGGU..
...........CGCGCCGA.AGCUGCCC.CC.GCAACUGUAA..AC.GG..........U
GAGCCGACGCAAUAC.............................GCCACUGGAU..CAU.
..........................................................AU
.CCGGGAAGGC...CGC..G.UC..GGCGACGAC..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUCGCCUGCUAUGUUGAC
>Rhodopseudomonas_pal.41 CP000301.1/96643-96430
CUCCUAGAUGAUCGCGACGGU...UCCCCUC......................UGGG...
.....GGAUC......AAAA..GGGAA.U.GC.G.G.UGCGGGACGGCUCUCGGUUGGAG
CAAGCCC....AAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGU.........U
AGUCUUUCGUCUGAU.............................GCCACUGGGAAACUCG
.........................................................GUC
.CUGGGAAGGC...GAC..G.AA..AGGUUCCGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAAUCGUGGUCACACG
>Rhodopseudomonas_pal.42 CP000301.1/4742649-4742447
UCUUUUCAGGCCGUCUUCGGUG..CCUCU........................GGUAA..
..CAGAGGUG......AAACU.GGGAA.U.GC.G.G.UGCGGCGAGAAAUCGCC......
...........AAUGCCGC.GGCUGCCC.CC.GCAACUGUAG..GC.GGA.........C
UGUGCCCGAUCGAUAA............................GCCACUGAUGCCGUG.
..........................................................CA
.UCGGGAAGGC...GAU..C.GG..GGACCAUGU..........................
.........................................CCGU.GAGCCAGGAGACCG
GCCGAAGACGCUGGUCCAACU
>Rhodopseudomonas_pal.43 CP000463.1/3539927-3539727
UACAAGAUAUGGCGUUACGGUC..CCCACAUGUCAC.................AUCAU..
..GUGGGGCU......AAGA..GGGAA.G.CC.G.G.UGU....................
...........GAAUCCGG.CGCUGCCC.CC.GCAACUGUCA..GC.GGC.........G
AGCCGCCGUCCAGCAAU...........................AUCACUGACGCCGCGA
G........................................................GUG
.UUGGGAAGAU..UGGA..C.GG..AAGCUGUGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUAGCAAACGCGUAACGU
>Brucella_suis_1330.1 AE014291.4/1309296-1309068
UCGCAAUUUUCAGGAGACGGU...UCCGCCA......................UUGC...
..GGCGGAUG......AAAA..GGGAA.C.AC.G.G.UGAAGCCAUAGGGCU........
...........GAAACCGA.GACUGCCC.CC.GCAACUGUAA..CC.GG..........A
GAGCUAUCCUCCACAGGCCGCGCAAGCGGCCAAA..........GCCACUGAAAGCAGCA
AUAUGCUG.................................................CAA
.UCGGGAAGGC..GGAG..G.CA..AAGCGAAGAC.........................
.........................................CCGG.AAGUCAGGAGACCU
GCCGUAUCCGGUCACCCAUGC
>Brucella_abortus_bv.1 AE017224.1/478516-478748
CCGUAAUACCGUCAUGACGGU...UCCCCGACCGAG.................AGCGA..
..AGGGGAUU......AAUA..GGGAA.C.AC.G.G.UGAGGACGACCCAUCAAGGGGCC
...........GAGACCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
UGCCGUUCAUCCUCGUGACGCCGAAAGCGUCAU...........GCCACUGUGC.CCAC.
.........................................................GGC
.ACGGGAAGGC..AGAU..G.GA..CGGCGAUUAU.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCGUCUUACGUAGUCCAUUG
>Brucella_canis_ATCC_.1 CP000873.1/297626-297839
ACCAUAUCUUGUGUUCGAGGUU..CUUUCGAUUCGA.................CGAGU..
..CGGGAGCU......AAGAC.GGGAA.U.CC.G.G.UGCGCUUGCCCAUGGUGGGCGGG
C..........AAUGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCUUUGCGCCCCAU............................GCCACUGGC..GAAA.
...........................................................G
.CCGGGAAGGC...GGG..U.GG..AAGCGUUGAG.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUUGAGCGUGAACGUCCAC
>Ochrobactrum_anthrop.1 CP000758.1/1918958-1919182
UCGCAAUUCUCAGGAAACGGU...UCCGCUG......................UUCA...
..GGCGGAUG......AAAA..GGGAA.C.AC.G.G.UGAAGCCAUCCUGGUU.......
...........GAUGCCGC.GACUGCCC.CC.GCAACUGUAA..CC.GG..........A
GAGCUAUCCUCCACAGCCGUGCAAGCGGUAAAA...........GCCACUGAGAGCAGUC
GAUG.....................................................CAC
.UCGGGAAGGC..GGAG..G.GA..AAGCGACGAC.........................
.........................................CCGG.AAGUCAGGAGACCU
GCCGUAUCCGGUCACCCAUGC
>Ochrobactrum_anthrop.2 CP000759.1/1328776-1328542
ACGUAAUAGUGUAACGACGGU...UCCCCGACCGAG.................AGCGA..
..AGGGGAUU......AAUA..GGGAA.C.AC.G.G.UGAGGACGACCCGAAAAGGGGCC
...........AAGACCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
UGCCGUUCAUCCUCGUGACGUUGAAAGCGUCAU...........GCCACUGUGCCGGAGA
.........................................................AGC
.GCGGGAAGGC..AGAU..G.AA..CAGCAGAUAU.........................
.........................................UCGU.GAGCCAGGAGACCU
GCCGUUUAGUGUUGUCCAUUG
>Ochrobactrum_anthrop.3 CP000759.1/250860-251074
ACUAUAUAUAGUGUUCUAGGUU..CUUUCGAUUCGU.................UGGGU..
..CGAAAGCU......AAGAC.GGGAA.U.CC.G.G.UGCGUUUCAUCCAUGACGGAUGC
GGC........AAUGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GG..........A
GAGUUCUGUCCAUCAC............................GUCACUGGC...UUU.
.........................................................G.G
.CUGGGAAGGC...GGA..C.AG..AAUGUUGAU..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUUGAACGAGUACGUCCAC
>Methylobacterium_ext.1 CP000908.1/1328850-1328641
CGAAGUUGCUGCGGCCAAGGUU..CCCCCGGAUGC..................AUGUC..
..CGAGGGCU......AAGA..GGGAA.U.UC.G.G.UAAGCCCGUCCGGGC........
...........GAGGCCGA.AGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCACCGUCGUCGAAG...........................GUCACUGGUGCCCUG.
..........................................................CA
.CCGGGAAGGC.CGAGA..C.GG..GGGCGCUGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUUGGCGCGACGAUGUCCC
>Methylobacterium_ext.2 CP000908.1/1617572-1617372
CUAUGACCGCUCCGUGACGGUG..CCCCGGC......................AGCG...
.....GGGUG......AAAA..GGGAA.U.GC.G.G.UGAGAGGUUUUCCAGAAGCCUC.
...........GAUUCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGUUCCUGCCACGA.............................GCCACCGGGU......
.........................................................GAU
.CCGGGAAGGC...GGC..A.GG..CACGAUACCA.........................
........................................GCCGC.GAGCCAGGAGACCU
GCCGUCCAGCGAAGUUUUGUU
>Methylobacterium.1 CP000943.1/2696265-2696461
GCUACCUUCCGCCGCGACGGUG..CCUCGGC......................GACG...
.....AGGUG......AAAA..GGGAA.C.GC.G.G.AGCGGGGCCAGCCCCG.......
...........GAAGCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........U
GCGGGCCCGCCAUCG.............................GCCACUGGA..GCGA.
...........................................................U
.CCGGGAAGGC...GGC..G.GG..CACGGUCCAC.........................
.......................................CAUCGC.GAGCCAGGAGACCU
GCCGUCACCCCUUCCUCUCGA
>Methylobacterium_ext.3 CP000908.1/2947467-2947267
CGUAGCUUGACCGUUGACGGU...UCCCG........................CAAG...
.....GGAUC......AAAA..GGGAA.C.GC.G.G.UGGAGGGCUUUCGAGCUC.....
...........GAUCCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GGA.........G
AGUCCUCCAUCACCAC............................GUCACUGGGCAUGCCU
.........................................................CGC
.CUGGGAAGAC...GAU..G.GA..GGGCGACGAC.........................
.........................................CCGC.CAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>Methylobacterium.2 CP000943.1/944045-944239
CCUAGCCUAUCGCUCGACGGU...GCCCU........................CCGG...
.....GGCCU......AACA..GGGAA.C.GC.G.G.UGAGGGCUCGCGCCC........
...........GAAUCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCCUCCAUCACCAC............................GUCACUGGGG.UCAU.
..........................................................GC
.CCGGGAAGAC...GAU..G.GG..GGGCGGCGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCGACCGUGGUCACACG
>Chelativorans.1 CP000390.1/3801882-3802094
UAUUCAAUGCAUGUCUGUGGUU..CUCCGGGGCGGUUUUG.............CCGUU..
..CCGGAGCU......AAGA..GGGAA.G.CC.G.G.UGCGCGAUGUUGC..........
...........AAAGCCGG.CGCUGCCC.CC.GCAACUGUAA..AC.GGC.........G
AGCCGAAAUCCACCGGU...........................GUCACUGAGGUGAUAA
.........................................................GCC
.UUGGGAAGAC...GGA..U.UG..AAGCGAAGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCACGGCAAGAAGAAACGUC
>Chelativorans.2 CP000390.1/2942047-2941844
CUAAAUAUAGCCCAUCACGGU...GCUGUCGAGUCGUUC..............GGGUC..
..GAGAGCUU......AAGA..GGGAA.G.CC.G.G.UGU....................
...........GAGGCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.AGC.........G
AGCUUGUGUCGCGUAUU...........................GCCACUGGUGCUCCUA
GA.......................................................GCG
.CUGGGAAGGC..CUGA..C.AG..AAGCGAUGAC.........................
.........................................CUGC.AAGCCAGGAGACCU
GCCGUGAUGAGCAUUGAACGU
>Mesorhizobium_loti_M.1 BA000012.4/1149122-1149327
CCUAAAUCCGCUCCAGACGGU...CCCUUGCCCGC..................AACGG..
..CAGGGGCU......AAGA..GGGAA.U.GC.G.G.UGCGGGAUUUCGAUCUC......
...........AAAUCCGC.GGCUGUCC.CC.GCAACUGUAA..GC.GA..........A
GAGCCAAGGCCGAAA.............................GCCACUGGGA..CGU.
..........................................................UC
.CCGGGAAGGC...GGCACC.CA..AGGCGAUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCUGCGACAAAAGAAUC
>M.loti.1 AL672113.1/43141-43341
UGAUUGUGCGCAUGUCGUGGUU..CUCCGCGCGGCACUG..............CCGUA..
..GCGGAGCU......AAGA..GGGAA.G.CC.G.G.UGC....................
...........GAUGCCGG.CGCUGCCC.CC.GCAACUGUUA..GC.GG..........C
GAGCCAAGCCCAUUGGU...........................GUCACUGAGGCGAACG
.........................................................GCC
.UCGGGAAGAC...GGG..C.AG..AGGCUUUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCACGACGAACAACGUCCAC
>Mesorhizobium_loti_M.2 BA000012.4/1101095-1100897
UAUAGUCAUGCAGUCGUCGGU...UCCGU........................UUUG...
.....GAGCC......AAGA..GGGAA.U.GC.G.G.UGCGGGCGAAAUUCUUGCCC...
...........AAUGCCGU.GGCUGCCC.CC.GCAACUGUGU..GC.GG...........
UAGUCCUCUCCAUAU.............................GCCACUGAAGAUUCG.
.........................................................UCU
.UCGGGAAGGU...GGG..G.AA..GGGCGCUGAU.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGACGACGGCAAAACUGAC
>Mesorhizobium_loti_M.3 BA000012.4/6749128-6749334
CUACGGUGGGUGCGUGAUGGU...CCCCGCGCCGA..................AAGGC..
..AAGGGGUG......AAAA..GGGAA.C.AC.G.G.UGAGACCUCAAAAGGUC......
...........GAGACCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........A
GAGCAAGAUCCGACAU............................GCCACUGGCCGGCAA.
..........................................................GG
.CUGGGAAGGC..AGGA..U.UG..CGCUGAGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCACUGAGUUGACCGGA
>Mesorhizobium_loti_M.4 BA000012.4/4044596-4044395
UUAGAUCAUGUCAUCUCAGGUG..CCGCUUC......................GUGACGA
CGGGGCGGAG......AAUU..GGGAA.G.CC.G.G.UCA....................
...........AAGUCCGG.CGCUGCCC.CC.GCAACGGUGG..UG.GAGU........U
CAAGUCGCAACGGGAG............................ACCACUGGGC.AAAA.
..........................................................GC
.CUGGGAAGGU...GUC..G.CG..ACCGUCCGCA.........................
..................................AGGACACUCCA.GAGCCCGGAAACCA
GCCCGAGAUUUUUGAACUCGA
>Mesorhizobium_loti_M.5 BA000012.4/6170874-6170694
AGGUCGCCGCCACUGCCUGGUG..CCCGCCG......................CAAG...
....CGGGAG......AAUC..GGGAA.C.AC.G.G.UUG....................
...........AACUCCGU.GGCGUG.C.CC.AACGCUGUAA..GG.GG..........G
ACCGCGCCGGUAAAU.............................GCCACUGUCG......
.........................................................AUG
.ACGGGAAGGC...ACC..G.GA..CGCGGGUUGA.........................
.........................................UCCC.GAGCCAGAAGACCG
GCCUGGCAGGCAUCGUCAUCC
>Parvibaculum_lavamen.1 CP000774.1/549380-549581
UACACUCCGCCCGCCUAUGGUG..CCCCGGCCG....................CAAAU..
..CCGGGGUU......AAAA..GGGAA.C.GC.C.C.GGAGCGCAUGCUCUUUC......
...........UUCGAGGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCUUUUUCCGAUUGU............................GCCACUGGAU......
..........................................................GU
.CCGGGAAGGC...AGG..G.AA..GGGCGAAGAC.........................
.........................................CCGC.GAGCCAGGAAACCU
GCCACAGGCUGUCGUCCGUCU
>Parvibaculum_lavamen.2 CP000774.1/668593-668795
UAGCAUCCGCCCCGCAAUGGU...UCCGAAGGCGAA.................UAGCC..
..GGAGGAUG......AAAA..GGGAA.C.CC.G.G.UUA....................
...........AAUACCGG.GGCUGCCC.CC.GCAACUGUAA..GC.AGA.........G
AGUUCUGCCCAACCAC............................GCCACUGGCGCUCCAC
CUCGG....................................................AGG
.CCGGGAAGGC...UGG..G.AA..AGAACAGUGA.........................
........................................CCUGC.GAGCCAGGAGACCU
GCCAUUGCCCGUCAACGCGAA
>Agrobacterium_tumefa.1 AE007870.2/441359-441124
CUUAUGUGAGAAAGCGACGGU...UCCUACAGCCGAA................AGGCG..
..AAGGGAUU......AAUA..GGGAA.C.AU.G.G.UGCGGGCGAUCUUUUUCGUCC..
...........AAUGCCUU.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
UGUUGUUCAUCCCAGUGACGCUUGAAGGCGUCAU..........GCCACUGUUUUUUUCG
G........................................................AAU
.GCGGGAAGGC..AGAU..G.AG..GGACGCAAAU.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUCAAAAUGGAAACCAUC
>Agrobacterium_tumefa.2 AE007870.2/921705-921914
ACAUUGGUUAGCCAUCGUGGUU..CUGCGGACG....................AAGGU..
..CCGGAGCU......AAGA..GGGAA.U.UC.G.G.UGAGGGCUUUAAUCACAGCCU..
...........GAAUCCGA.AGCUGCCC.CC.GCAACUGUAA..GC.GAC.........G
AGCGAAAGUCCAUCAU............................GUCACUGAGG..CCG.
.........................................................GCC
.UCGGGAAGAC...GGA..C.CA..AAGCUAUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCGCGAUAGAUAACGUCCAC
>A.vitis.1 U45329.1/408-194
CUAAAGUGGCAGCGUAUCGGU...UCUGCAAGUGUCAAA..............ACGCN..
..CGCGGAUG......AAAA..GGGAA.U.AC.G.G.UGAGGACGACCCAAGUAAGGGCC
...........GAAACCGU.GGCUGCCC.CC.GCAACUGUGA..AC.GG..........C
GAGCGAUGUCCAUCAU............................GCCAUUGGCC.CCAC.
..........................................................GG
.CCGAUAAGGC...GGA..C.AA..AGCCCAGAC..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGAUAAGCAUGCGCGAAAG
>Agrobacterium_tumefa.3 AE007869.2/70421-70645
ACUAUAUGUGGUGUUCAAGGUU..CUUCCGAUUCGCU................AGGGU..
..UGGGAGCU......AAGAC.GGGAA.U.UC.G.G.UGCGUAACGCCAUCACGGCGGAG
C..........AAGGCCGA.AACUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCAUCGUUCCGAUUUGA.........................GCCACUGGAGCCAAAA
.........................................................GCU
.CCGGGAAGGC.UGGAA..U.AG..AUGUUGUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCUUGAGCGCAAAUGUCCAC
>Agrobacterium_tumefa.4 AE007869.2/1640673-1640490
CCAUAGCUUCUCCGGUCAGGUG..CCCGCC.......................CUUGC..
..GGCGGGAG......AAUC..GGGAA.U.CC.G.G.UGA....................
...........AAGACCGG.AACGUG.C.CC.AACGCUGUAA..GG.CG..........G
AUGCUCUUUUUCUCAU............................GCCACUGAA..GCAA.
...........................................................U
.UCGGGAAGGC...GAA..A.GG..GGCGGAUGA..........................
.........................................AGCU.UAGUCAGAAGACCG
GCCUGGCAGGAUAGACCGAAC
>Agrobacterium_tumefa.5 AE007869.2/877627-877855
GGAUAACAUGUCCGUGAUGGUU..CCUUCCG......................GGCGUUC
C.GGAAGGUG......AAAA..GGGAA.C.AC.G.A.UAGGGACAAAUCC..........
...........UCAUUCGU.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........A
GAGCCUGAAACGAAAU............................GCCACUGGCAAGCCAU
CUCGCCUCCAUCAAGGGGGAAGGCA................................AUG
.CCGGGAAGGU...GUU..U.CA..GGUUUUGAC..........................
.........................................CCGU.AAGCCAGGAGACCU
GCCAUCACGGAAAUAUCCAUG
>Agrobacterium_tumefa.6 AE007869.2/2810186-2809969
UAAGGGUAAGGGACUGACGGU...CUUUUCCCGGC..................AACGG..
..GAAAAGCU......AAGA..GGGAA.C.AC.G.G.UUCCGCCCCGAGAAAGGGU....
...........CAUUCCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........U
AAGCCCGCACCGUAAA............................GCCACUGAACCUUUAU
GAUC.....................................................GGU
.UCGGGAAGGC...GGU..G.AC..AGGGUGUUGA.........................
......................................UAGCCGC.AAGCCAGGAGACCU
GCCGUUUCAGGAAAAAGCGUC
>Rhizobium_leguminosa.1 AM236080.1/4518994-4518768
ACCAUAUCUAGUGUUCGAGGUU..CCGUCGAUUCGUG................AGGAU..
..CGGCGGCU......AAGAC.GGAAA.U.UC.G.G.UGCGCGUCGCCAUCAUGGCGCGG
C..........AAUGCCGG.AGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCAACUGUCCGAUUUCAG........................GUCACUGGAGCAUGAU
.........................................................GCU
.CCGGGAAGGCUGGGGC..A.AA..GUGCUUUGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUCGAAUGAAACGUCCACG
>Rhizobium_etli_CFN_4.1 CP000133.1/3940621-3940395
ACUAUAUCUAGUGUUCAAGGUU..CCUUCGAUUCGUC................AGGAU..
..CGCGGGCG......AAGAU.GGGAA.U.AC.G.G.UGCGUUUCGCCAUGACGGCGCAA
C..........AAGGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCAACUGUCCGAUUUCAG........................GUCACUGAGGCAUGAU
.........................................................GCC
.UCGGGAAGGCUGGGGC..A.GG..GUGCUUCGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCUUGAACUAGAUGUCCACG
>Rhizobium_leguminosa.2 AM236080.1/2836182-2835994
GAAAUAGAUGCGCCGUCAGGUG..CCCGCCG......................GUAA...
..GGCGGGAG......AAUC..GGGAA.U.CC.G.G.UGC....................
...........AAGACCGG.AACGUG.C.CC.AACGCUGUAA..GG.CC..........G
ACGUUUGCCGCUUCAUCAC.........................GCCACUGGC..UUUU.
.........................................................C.G
.CCGGGAAGGC..UGCG..G.CA..GACGGAUGA..........................
.........................................CGCC.CAGUCAGAAGACCG
GCCUGGCAAGAUAGACCGAUC
>Rhizobium_etli_CFN_4.2 CP000133.1/2475759-2475573
GAAAUAGAUACCUCGUCAGGUG..CCCGC........................UUUCA..
..CGCGGGAG......AAUC..GGGAA.U.CC.G.G.UGC....................
...........AAGACCGG.AACGUG.C.CC.AACGCUGUAA..GG.CC..........G
ACGCCCGCCGCUUCAUCAU.........................GCCACUGG..GUUUU.
.........................................................G..
.CCGGGAAGGC..UGCG..G.CA..GACGGAUGA..........................
.........................................CGCC.AAGUCAGAAGACCG
GCCUGGCAAGAUAGACCCAAC
>Sinorhizobium_melilo.1 AL591985.1/580383-580598
CAUACCAGAUCAUGUGAUGGU...UCCGCCCGACUGA................AGAAC..
..GGCGGAUG......AAAA..GGGAA.C.AC.G.G.UGAGGACGACCCAUCAGGGGCU.
...........AAAACCGU.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCAAAGUCCAAGGAU...........................GCCAUUGGCCAUGAAU
.........................................................CGG
.CUGAUAAGGC...GGA..C.AA..AGCUACGAC..........................
.........................................CCGC.AAGCCAGGAGACCU
GCCAUCACCUUGGGCGACACG
>Sinorhizobium_melilo.2 AL591688.1/954760-954963
UUAGAUGAGGACACUCAAGGUG..CCGCCUC......................GAAGGGA
..GGGCGGAG......AAUU..GGGAA.G.CC.G.G.UCA....................
...........AAUCCCGG.CGCUGCCC.CC.GCAACGGUGG..UG.GAGCG.......A
ACAGCCACGGCAGAAG............................GCCACUGGACACCGC.
..........................................................GU
.CCGGGAAGGC...GCC..G.GG..CAGGUCCCUU.........................
................................GCGGACGGCUCCA.GAGCCCGGAAACCA
GCCUUGAAGCAGAAAUAGACC
>Sinorhizobium_medica.1 CP000738.1/1657203-1656988
GCCAUAUGACAGCCGUCAGGUG..CCCGC........................UUUUA..
..UGUGGGAG......AAUC..GGGAA.G.CC.G.G.UGC....................
...........AGUUCCGG.CACGUG.C.CC.AACGCUGUGA..AG.GG..........G
ACGUUCUCGCCAAAAACAGGCUCUGAAUCUUUUCAGAGCUUU..GCCACUGAAUUUUAAA
GU.......................................................GAU
.UUGGGAAGGC...GGC..G.GG..AGCGGAUGA..........................
.........................................UCCG.AAGUCAGAAGACCG
GCCUGGCGAGAUAGACCGGCC
>Sinorhizobium_melilo.3 AL591688.1/1999767-1999554
GGCCAUAUGCCGCCGUCAGGUG..CCCGCGA......................AAUG...
....CGGGGG......AAUC..GGGAA.G.CC.G.G.UGC....................
...........AGUUCCGG.CACGUG.C.CC.AACGCUGUGA..AG.GG..........G
ACGUUCUCGCCAAAAAGGGCUCUGAAUCUUUUCAGAGCUUU...GCCACUGAAUAUUGAA
GC.......................................................UAU
.UCGGGAAGGC...GGC..G.CG..AACGGAUGA..........................
.........................................UCCG.AAGUCAGAAGACCG
GCCUGGCGAGAUAGACCGGCC
>Sinorhizobium_melilo.4 AL591985.1/66246-66476
ACAUUAACUGGGACCGACGGU...UCCCCUACCCGUGA...............GGUGG..
..AGGGGAUU......AAUA..GGGAA.C.AC.G.G.UGCGGACGACCCAAGAGGGACC.
...........AAAACCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
CGUCGUUCAUCCUUGUGGCGCCAAGGCGCCA.............GCCACUGCGCGCGUU.
..........................................................GC
.GCGGGAAGGC..AGAU..G.AG..CGACUCUGU..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUCAAAUCGAUCCAACGU
>Sinorhizobium_medica.2 CP000739.1/543105-542876
ACAUUAACUGGGACCGACGGU...UCCCCUACCCGAGA...............GGUGG..
..AGGGGAUU......AAUA..GGGAA.C.AC.G.G.UGCGGACGACCCAAAAGGGACC.
...........AAAACCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GGA.........U
CGUCGUUCAUCCUCGUGGUGCCGAGGCACCA.............GCCACUGCGC..GAC.
..........................................................GC
.GCGGGAAGGU..AGAU..G.AG..CGACUUCUGU.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUCAAAUUCGAUCCAUCG
>Sinorhizobium_medica.3 CP000738.1/523907-524111
UUAGAUGGACACACUCAAGGUG..CCGCCUG......................AAGGGA.
..GGGCGGAG......AAUU..GGGAA.G.CC.G.G.UCA....................
...........GAUCCCGG.CGCUGCCC.CC.GCAACGGUGG..UG.GAGCG.......A
ACAGCCACGGCAGAAG............................GCCACUGGACAGCGC.
..........................................................GU
.CCGGGAAGGC...GCC..G.GG..UAGGUCCCCC.........................
..............................UGCGGGACAGCUCCA.GAGCCCGGAAACCA
GCCUUGAAGCAGAAACGAAUC
>Xanthobacter_autotro.1 CP000781.1/3651336-3651132
UUUAGUGCCCCUGUCGAAGGU...CCCGUGG......................UCCCA..
..CACGGGCGC.....AAAA..GGGAA.U.GC.G.G.UGCGGGAGGUCUCUCCC......
...........AAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........U
GAGCCCCUGCCACAU.............................GCCACUGUCGCCGCAA
G........................................................GCG
.CCGGGAAGGC...GGU..G.GG..GGCGCUGAU..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCUUCGACAAGGUCCGCGCC
>Xanthobacter_autotro.2 CP000781.1/4182310-4182509
UAUAGUCGUCCCGUCGUCGGUG..UUCGCUU......................UCGG...
...GCGGACC......AAGA..GGGAA.U.GC.G.G.UGCGGGAGUUUCUCCC.......
...........AAAGCCGC.GGCUGCCC.CC.GCAACUGUCG..GC.GGU.........G
AGCGGGCCUGCAACAU............................GCCACUGGA..GCAA.
...........................................................U
.CCGGGAAGGC...GCA..G.GC..UUCGCAAUGA.........................
........................................CCCGC.GAGCCAGGAGACCU
GCCGGCGACAUCCUGCCCGUU
>Rhodobacterales_bact.1 AATR01000002.1/37098-37316
GCAAACAGGUUUUUGCAUGGU...UCCCCAUUAAAGUCAUAAUAA........AUGGC..
..UGGGGAUC......AAAU..GGGAA.U.GU.A.G.ACAGGGACUACCCGAAUGGGGCC
U..........AAAGCUGC.AACCGCCC.CC.GCGACUGUGU..GC.GG..........A
GAGUGAAGCCCAAA..............................GCCACUGGU..GAAA.
...........................................................A
.CUGGGAAGGC...GGG..C.AA..AACGAUCUAU.........................
.........................................CCGU.GAGUCAGGAAACCA
GCCUUGCAACGGCGUUAUCGC
>Hyphomonas_neptunium.1 CP000158.1/1548021-1548210
ACAUCAACCCCAUCAGAUGGUG..CUCCCCU......................GACA...
...GGGAGCU......AAGA..GGGAA.G.CC.G.G.UGU....................
...........AAAUCCGG.CGCUGUAC.CC.GCAACUGUUA..GC.CGG.........G
AGCUGAUGGCCACUAU............................GCCACUGGAACGCGA.
.........................................................GUU
.CUGGGAAGGC...GGC..C.AA..AGGCGACGAU.........................
.........................................CGGU.GAGCCAGGAGACCU
GCCAUCGCGUCGUUUGUCCGG
>Hyphomonas_neptunium.2 CP000158.1/1153196-1153386
ACGCCGCCUCACGCAACAGGUG..CCCGGAU......................CAUGG..
..UCCGGGUG......AAAA..GGGAA.G.CC.G.G.UGA....................
...........GAAUCCGG.CGCUAUGC.CC.GUAACUGUGA..GC.GG..........G
GAGCCGUGUGAGCCAUAC..........................GCCACUGG...GAAA.
............................................................
.CCGGGAAGGCAGCUCU..C.UC..CGGCGAUGAU.........................
.........................................CCGCGAAGUCAGGAGACCU
GCCUGUUGCCGUCGUUGGCUC
>Maricaulis_maris_MCS.1 CP000449.1/2738434-2738239
UAGCUUUCGCGCCGCGAUGGU...UCCCU........................CACG...
.....GGAAU......AAUA..GGGAA.G.CU.G.C.UCAGGCCUUCGGGCC........
...........AAGUCCAG.CGCUGUUC.CC.GCAGCCGUAG..GC.GGC.........G
AGCGGUGAGGCACAAA............................GCCACUGGGG.GUGA.
..........................................................CC
.CUGGGAAGGC...GCU..U.CA..UCCGCAUUGA.........................
........................................CCCGC.AAGCCGGAAGACCU
GCCGUCGCUGUCGUCUGUCCG
>Oceanicaulis.1 AAMQ01000002.1/102723-102924
CACACCGACAUACGCGACGGUU..CUCCCGC......................GAGG...
.....GAGCG......AAGA..GGGAA.CACC.G.G.UGCGACGCGCGAGCGUC......
...........UGGUCCGG.GGCUGUAC.CC.GCAACUGUGA..GC.GGC.........G
AGCGAGGCGUCAACA.............................GCCACUGGAUCGUCA.
.........................................................GAU
.CUGGGAAGGC...GGC..G.CA..UCGCAUUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCGACGCGGUCGCUCGUUCA
>Dinoroseobacter_shib.1 CP000830.1/164274-164052
CGCAGAACAGUCAGGCAUGGU...UCCCCGUGCCCGCGCCAAG..........CGCCC..
..GGGGGAUC......AAAU..GGGAA.U.GU.G.G.AACGGUCCGAUCCAAACCGGAGG
ACC........AAAGCCUC.AGCCGCCC.CC.GCGACUGUAU..GC.GG..........A
GAGGGAGAUCGACAU.............................GCCACUGGGG..CCC.
.........................................................GCC
.CCGGGAAGGC...CGA..U.CC.ACCCCGAUGAC.........................
.........................................CCGC.GAGCCAGGAGACCA
GCCAUGCGCGACACCCUUAGC
>Dinoroseobacter_shib.2 CP000830.1/546421-546638
AGCGAUGCUCUGAUCGAUGGU...UCCCGAAACCCGCGA..............GGGUG..
..AAGGGAUG......AAAA..GGGAA.C.AC.G.G.UGAGGCGUAGCCAUCAGGCACC.
...........AAACCCGU.GACUGCCC.CC.GCAACUGUGA..GC.GG..........U
GAGCGACCCCGUGGAC............................ACCACUGGACCGAUGC
.........................................................GGU
.CCGGGAAGGU...UCG..G.GG..AAGCCGUGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCAUCGAUGGUGCGCUUUCG
>Jannaschia.1 CP000264.1/2958160-2957972
GAACAGGGUCACGGCGAUGGU...GCCCUUC......................UUGG...
...AGGGCCU......AAGA..GGGAA.C.GC.G.G.UGA....................
...........AACCCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........U
GAGCGGACCUGCGUAU............................GCCACUGAGCCGACA.
.........................................................AGC
.UCGGGAAGGC..GCAG..G.CC..CCGCCCUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCAUCACCUGUGAAACGCAU
>Jannaschia.2 CP000264.1/2259475-2259261
UGAAAUCAAACUGGUGAUGGU...GUUUCGACAUCCAAGA.............CGAUG..
..UCGGACUG......AAAA..GGGAA.U.AC.G.G.UGAGGACGCGCCUUAGGGCACC.
...........AAAUCCGU.AACUGCCC.CC.GCAACUGUAA..GC.GG..........U
AAGCGACGCCAAAUAU............................GCCACUGGGA.CAGC.
..........................................................UC
.CCGGGAAGGU...UGG..C.CA..AGCGUUGAU..........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCAGGUGUUGAAACAUU
>Labrenzia_aggregata_.1 AAUW01000004.1/197975-198192
GUUUAGGAAGAAACUGACGGU...UCCGGAGAAGGCCUUG.............CCCGA..
..UCCGGAUG......AAAC..GGGAA.U.CC.G.G.UGAGGGCUUUUCAAGUCC.....
...........GGGUCCGG.AGCUGCCC.CC.GCAACUGUGA..GC.GG..........U
GAGUGGCUGUACGAAA............................ACCACUGGCGUCCUGA
UG.......................................................GGG
.CCGGGAAGGG..GUAC..A.GA..CCGCGCUGAG.........................
.........................................CCGC.AAGCCAGGAGACCG
GCCGUCGCAUUGGCAACCCUU
>Labrenzia_aggregata_.2 AAUW01000003.1/68358-68148
AAACCUAGAUCGUGUGAUGGUU..UCGCCCGAACAAGC...............GUAAC..
..GGCGGAUG......AAAU..GGGAA.C.AC.G.G.UGAGGCGUACCCAACAGGGACC.
...........AAGACCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GA..........A
GAGCAAAGCCCUUGA.............................GCCACUGGA..GCGA.
...........................................................U
.CCGGGAAGGC...GGG..C.UG..CGCGGAGAC..........................
.........................................UCGC.GAGCCAGGAAACCU
GCCAUCCAGCGGUCCCAUUGG
>Labrenzia_aggregata_.3 AAUW01000028.1/66358-66145
GAGCACUUAGGAAGAGAUGGU...UCCCGACUCUGAACU..............UCGGA..
..GCGGGAUU......AAAA..GGGAA.C.AC.G.G.UGAGACCAGGCCGCAAGGCUUC.
...........AAAUCCGU.GACUGCCC.CC.GCAACUGUGA..GC.GGU.........G
AGCAAACCUGAAAGC.............................GCCACUGGGG..AAA.
..........................................................CC
.CCGGGAAGGA...UCA..G.GC..AAGCUAUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUUUCACCUUAAACCUUA
>Loktanella_vestfolde.1 AAMS01000001.1/256679-256898
GGCACAACAUGACGGCACGGU...UCCCCGCACGGCGCGCA............GCGUC..
..AGGGGAUC......AAAU..GGGAA.U.GU.G.G.ACGCGCCGAUCCUGUCAGGGAGG
CGC........CAAGCCAC.AGCCGCCC.CC.GCGACUGUAU..GC.GGA.........G
AGUGCCUUGUUAACAU............................GCCACUGGG...UCC.
.........................................................G.C
.CCGGGAAGGC...AAC..A.AG..GUGCAUCGAC.........................
.........................................CCGC.AAGCCAGGAGACCA
GCCAUGCACCGGGGAUCGCCC
>Maritimibacter_alkal.1 AAMT01000006.1/185943-186161
GCCACAAGGAUAAGGCAUGGUU..CCCGACACGGCGCAA..............AGCGC..
..CAAGGGAG......AAUAU.GGGAA.U.GC.G.G.AGGGGUGAUCCAAACCGGAGCCU
...........UCAGCCGC.AGCCGCCC.CC.GCGACUGUGAC.GC.GG..........C
GAGCGCCCGCCGGAU.............................ACCACUGAGC..CUC.
.........................................................GGC
.UCGGGAAGGU...GGC..G.AA..GCGCGACGAC.........................
.........................................CCGCAAAGCCAGGAGACCU
GCCAUGUGAAACGAAACCCCA
>Oceanicola_batsensis.1 AAMO01000002.1/489939-490150
GGCACAACCGAAAGGCAUGGU...UCCUCAGACGGGUCUC.............AGGCC..
..CGAGGAUC......AAAU..GGGAA.U.GC.G.G.AGAGGCGACCCACAUCGGGGCCU
...........UCAGCCGC.AGCCGCCC.CC.GCGACUGUGA..GC.GG..........A
GAGCAUGUGUCACGA.............................GCCACUGG...GCAA.
............................................................
.CCGGGAAGGC...GGC..A.CG..AUGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCA
GCCCUGCGUCAAUUCUAACCG
>Oceanicola_granulosu.1 AAOT01000001.1/134844-135060
GCACAAAGAUCCCCGCAUGGU...UCCAGCCGGACGCGUCAC...........GCGGC..
..CGAGGAUC......AAAA..GGGAA.U.GC.G.G.UGCGGGCGGAUCCAAACAGGACG
CCC........AAUGCCGC.AGCCGCCC.CC.GCGACUGUCA..GC.GGA.........G
AGCGUCUCGCCAUC..............................GCCACUGG...GCAA.
............................................................
.CCGGGAAGGC...GGC..G.CG..ACGCAGUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCAUGCACCGGCUUUUGCCG
>Paracoccus_denitrifi.1 CP000489.1/1337566-1337356
CCAUGAGGGCCGAGCUACGGU...UCCGGCG......................GCGUGCC
..UCCGGAUU......AAAA..GGGAA.UCCC.G.G.UGCGCCUGACCUGUUCAGGC...
...........AAUGCCGG.AGCUGCCC.CC.GCAACUGUAU..GC.GGU.........G
AGUGACGGUCGAUCAU............................GCCACUGGCGCGAAU.
.........................................................GCG
.CCGGGAAGGC...CGG..C.CC..GAACGAUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCGCAGCAAUCACCCAUUUC
>Paracoccus_denitrifi.2 CP000489.1/2543185-2543386
GCACAGACAUGGGGCGCUGGUU..CCUGUCC......................UAUG...
...ACAGGCU......AAGA..GGGAA.U.GC.G.A.CAGGCAACCGCCU..........
...........GAAA..GC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
AAGGUCGCCCCUCU..............................GCCACUGGC..GAAA.
...........................................................G
.CCGGGAAGGC...GGG..G.CG..GCCGUGGGCC.........................
..............................CAGGCCCGAAUCCGC.AAGCCGGGAGACCU
GCCGGUGCAGAAGGAUUGACC
>Paracoccus_denitrifi.3 CP000489.1/1328400-1328204
CGCUAUGGCGGAGUUGUCGGU...UUCCG........................CAAG...
.....GAAUU......GAAA..GGGAA.U.CC.G.C.CGGGGCAUCAGCCC.........
...........CGAACCGG.AACUGCCC.CC.GCAACUGUAG..GC.GG..........C
GAGCAGGGUGCGAAACA...........................GCCACUGUGGCCCAU.
.........................................................GCC
.AUGGGAAGGC..CGCA..U.CC..CUGCCGUGAC.........................
.........................................CCGU.CAGUCAGGAGACCU
GCCGACGCGAUGACCAACCCG
>Paracoccus_denitrifi.4 CP000489.1/2539767-2539972
GUAACAUAUGCGUGUAUCGGUG..CCCCU........................UUCG...
.....GGGCC......AAAA..GGGAA.U.GC.G.G.UGCCGUCUCCGGCGUCUUGGGGA
CC.........AAAUCCGC.AGCCGCCC.CC.GCGACUGUAG..GC.GGA.........G
AGCGGACGCCCAUCGU............................GCCACUGGCC.AUCC.
..........................................................GG
.CCGGGAAGGC...GGG..C.GU..CAGCCGUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGAUGCGUGAAACCGCAAU
>Paracoccus_denitrifi.5 CP000490.1/163550-163337
CCUAUAUGUAGGCAUCACGGUU..CUUUCGGGUCGAUC...............CGACC..
..CGAAAGCG......AAGA..GGGAA.G.CC.G.G.UGCGCCUUUCGGGGC........
...........AAGGCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.AGC.........G
AGCCUGCGCCGGAUCAC...........................GCCACUGGUGCCGCAC
G........................................................GCA
.UUGGGAAGGC...CGG..C.AA..GGGCAGCGAC.........................
.........................................CUGC.GAGCCAGGAGACCU
GCCGUGAUGAUGACGAUGAAC
>Paracoccus_denitrifi.6 CP000490.1/1566394-1566586
GCUAACUGCAACGGUCAUGGUUG.UCCCGGG......................GCCGACU
..CGGGGAUG......AAAA..GGGAA.G.CC.G.G.UGA....................
...........AAAGCCGG.CACUGCCC.CC.GCAGCUGUAA..GC.GGA.........G
AGCGACGCCGGAUCA..............................CCACUGGGGCCACGC
.........................................................GCC
.CCGGGAAGG....CCG..G.CC..AAGCCGAGAC.........................
.........................................CCGC.AAGUCAGAAGACCU
GCCAUGACGCGAAAGGACGAA
>Paracoccus_denitrifi.7 CP000490.1/155234-155429
CUACCAAGUCGCUGCAUCGGU...UUCCG........................CAAG...
.....GAAUG......AAAA..GGGAA.U.CC.A.G.CGCGCCCGAUGGGCGC.......
...........GAAAC.GG.AACUGCCC.CC.GCAACUGUAG..GC.GG..........C
GAGCGCGAUCUGGCAG............................GCCACUGGGCACGAU.
..........................................................GU
.CCGGGAAGGC..AGGA..U.CC..GCGCAACGAC.........................
.........................................CCGC.CAGUCAGGAGACCU
GCCGGCGCGAAUUCACCAGAC
>Paracoccus_denitrifi.8 CP000490.1/1574718-1574933
GCAAUGCGGGGCCGCUACGGU...UCCGGCGC.....................GAUCU..
..GCCGGAUG......AAAA..GGGAA.CACC.G.G.CGCGCCCAUCGCCGCGAUGCGGA
CGGGC......AAGGCCGG.GGCUGCCC.CC.GCAACUGUAG..GC.GGU.........G
AGCGAAGGCCGAAGGC............................GCCACUGGGA.AGAU.
..........................................................CC
.CCGGGAAGGC...CGG..C.CC..GAGCGAUGAU.........................
.........................................CCGC.CAGCCAGGAGACCU
GCCGCAGCGAUCACCCAUUUC
>Paracoccus_denitrifi.9 CP000489.1/1319736-1319936
AUUUUACCGUCAGAUCAAGGUG..CCGGG........................GAAAU..
..CUCCGGGU......AAAA..GGGAA.U.UC.G.G.UGAGGCUGUCGCC..........
...........AAAUCCGA.AGCUGCCC.CC.GCAACUGUAG..GC.GG..........A
GAGCCUGUCCGACAU.............................GCCACUGGCGCGGAUU
UC.......................................................GCG
.CCGGGAAAGC...UGG..A.CC..AGGUAAAGAU.........................
.........................................CCGC.AAGUCAGGAAACCU
GCCUGGAUCAAUCACCUGUUC
>Paracoccus_denitrifi.10 CP000491.1/325972-326168
ACUACACGGUCGGGUGACGGU...UUCCGAU......................UUCG...
.....GAAUG......AAAA..GGGAA.C.GC.A.G.UGCGGACCAGCCGGUCC......
...........CAUGCUGC.GGCUGCCC.CC.GCAACUGUAG..GC.GG..........A
UAGCCUUUGCCAACG.............................GCCACUGGGU.GCGA.
..........................................................CC
.CCGGGAAGGC...GGC..G.AC..AGGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUUGUCACGCG
>Pelagibaca_bermudens.1 AATQ01000040.1/37497-37304
CUAGAUAUAGGUGCUUCAGGUGCUCGGCGGA......................AUCAU..
..CCGCCGGC......AAGA..GGGAA.G.CC.G.G.UGA....................
...........AAAGCCGG.CACUGCCC.CC.GCAACUGUAA..GC.GG..........C
GCGCGAGGCCGAUCAU............................GCCACUGGGGCUGCC.
.........................................................ACC
.CCGGGAAGGC...CGG..U.CA..AGCGGGACCC.........................
........................................GCCGC.GAGUCAGGAGACCU
GCCGGAAGCAACAGGAUUUGA
>Pelagibaca_bermudens.2 AATQ01000007.1/84467-84279
UUAAGCGGAGCGGGCCUCGGUU..CCGGGCC......................UUGU...
....CCGGAG......AAUA..GGGAA.C.GC.G.G.UGC....................
...........AAACCCGC.GACUGCCC.CC.GCAACUGUGA..GC.GGU.........G
AGUGCGACCGGCAUAU............................GCCACUGGGCGAAAC.
..........................................................GC
.CCGGGAAGGC...CCG.CG.UC..GCGCGAUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAAGGUGAUCACCCUCCCC
>Pelagibaca_bermudens.3 AATQ01000008.1/108753-108536
CAUCACUGACGCAUAUCCGGU...CCCGGUGCAGUC.................UCUGC..
..CCCGGGCGCA....AGAA..GGGAA.C.GC.A.G.UGCGGCACGGGCCAUUCGGUCAC
GGCC.......AAUUCUGC.GACUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCAACGGCUGAUCGU............................GCCACUGGA..GCAA.
...........................................................U
.CCGGGAAGGC...CAG..C.CC..GCGCGAUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCGGAUACGCGCCCCUGGAA
>Pelagibaca_bermudens.4 AATQ01000008.1/90798-91010
CGCAUCUGGCACCACGCUGGUG..CCUGUGU......................AAAC...
.....AGGUG......AAAA..GGGAA.U.GC.G.C.CAGCCCGGGAAACCGGG......
...........UCAAGCGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
AAGGUCCUCC...ACC............................GCCACUGGC..CUUG.
.........................................................C.G
.CCGGGAAGGC...AGG..G.GG..GCCGCUGGAU.........................
.......................GGCGCUGCCAUCCUGCAUCCGC.AAGCCGGGAGACCU
GCCAGCGCAAGACGACACCAA
>Rhodobacter_sphaeroi.1 CP000577.1/1528291-1528485
CACCACUUCCGGCGCGCUGGUU..CCUGUCC......................GACCG..
..GACAGGCG......AAGA..GGGAA.U.GC.C.....C....................
...........CAGA.GGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGGUUGCCC....AA............................GCCACUGGCC.GCAA.
..........................................................GG
.CCGGGAAGGC....GG..G.CC..GCCGCGGAGC.........................
..........................CGCAAGGCCCCACAUCCGC.AAGCCGGGAGACCU
GCCAGCGCUGAGACUGACGGG
>Rhodobacter_sphaeroi.2 CP000662.1/267567-267380
UCAUCACAGGGACGCUUUGGUU..CCCGCGGC.....................AGCAC..
..CGCGGGCU......AAGA..GGGAA.G.CC.G.G.UGG....................
...........GAAUCCGG.CACUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCCUUGCUUCGAA.............................ACCACUGGCC..AAU.
..........................................................GG
.CCGGGAAGGG...AAG..C.CG..GGCGCCCGAG.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCAGAGCCACAGAGACGACC
>Rhodobacter_sphaeroi.3 CP000144.1/239679-239466
GUCACGCCGGGCUAUGACGGU...UCCCGAACGCCGCA...............AGGUC..
..AAGGGAUG......AAAA..GGGAA.C.GC.G.G.UGAGGGGUGCUGACCCC......
...........AGUUCCGC.GACUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCCGCCCCGAAGAC............................GCCACUGGACCGAAAG
.........................................................GGC
.CCGGGAAGGU..UCGG..G.GA..AGGCCGCGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCGUCGAGCGCGCAAGCGCC
>Rhodobacter_sphaeroi.4 CP000578.1/656987-656780
GUCACCUCAUGGCACGACGGU...UCCCGAAGGUCGCAA..............GGCCC..
..GAGGGAUG......AAAA..GGGAA.C.GC.G.G.UGAGGGGAAACCC..........
...........GAGGCCGC.GACUGCCC.CC.GCAACUGUGA..GC.GGC.........A
AGCCGCCCCGACGGAC............................ACCACUGGCC..GAU.
..........................................................GG
.CUGGGAAGGU...UCG..G.GG..AUCGGCCACG.........................
.......................................ACCCGC.GAGUCAGGAGACCU
GCCGUCGGGCGCAUCCGCGCC
>Rhodobacter_sphaeroi.5 CP000662.1/326212-326417
AAUGACAGGCGCGUGAUCGGU...UCACCCGGGCGUCAU..............GCGUC..
..CGGGGAUU......AAAA..GGGAA.C.GC.G.G.UGCGCCCCGAAGGGGC.......
...........AAGACCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........U
GAGCGACGCCGAAGAU............................GCCACUGGGA....G.
.........................................................AUC
.CCGGGAAGGC...CGG..C.CG..AGCCGAGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGCUCGCCCGCCGGCCCCC
>R.capsulatus.1 AF010496.1/105318-105541
CCACUCAGGGCGGGCGCUGGUU..UCUGUCC......................UAUG...
...ACAGGCG......AAGA..GGGAA.U.GU.G.A.AGGGAAUUGCGACGGCUUUGCCG
CGAAAC.....CCGACCGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGGGCGCCCCGAG..............................GCCACUGGC..ACCA.
...........................................................G
.CCGGGAAGGC...GGG..G.CG..ACCGUGAGGG.........................
..........................GACCCCCCCUCGCAUCCGC.AAGCCGGGAGACCU
GCCAGCGCAUGGAUUUCGGGC
>Rhodobacter_sphaeroi.6 CP000578.1/651773-651962
GCAUCGUCGGCUGGCCCUGGUU..CCCGCGG......................CGAUCC.
..CGCGGGCG......AAGA..GGGAA.G.CC.G.G.UGC....................
...........AAGUCCGG.CGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCCAUCUGCCAU..............................GCCACUGGCCCCCAC.
.........................................................GGG
.CCGGGAAGGG...GCA..G.CC..GGCGUCCGAG.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGGGCCUUGACGACCAUCC
>Rhodobacter_sphaeroi.7 CP000662.1/314827-314627
UUCAACGGCAGCGUCAUCGGUU..CUUCCGG......................CAACG..
..GAAGAGGA......AAGA..GGGAA.U.GC.G.G.UGAGGCCGGAUGGCC........
...........GACUCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........U
GAGCGAGGCCGACAU.............................GCCACUGGGCGCCCU.
..........................................................GC
.CCGGGAAGGC...CGG..C.CG..AAGCUGUGAU.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGCUGGCGCGCGGGGAGCG
>Rhodobacter_sphaeroi.8 CP000661.1/387171-386964
GCCGAUGGUGCGCGGGACGGUU..CCCGGGG......................GCAGC..
..CCCGGGCG......AAGA..GGGAA.U.GC.G.G.UGCGGGCCUGUUCGGCCC.....
...........CAAGCCGC.GACUGCCC.CC.GCAACUGUAG..GC.GGC.........G
AGCGCGUCCCAUCAUG............................CCCACUGGCCCCGGAC
.........................................................AGG
.CCGGGAAGGG...CGG..G.AC..AAGCCGAGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCGUCAUCGGACCUGUAACA
>Rhodobacter_sphaeroi.9 CP000143.1/2531295-2531502
ACGGAAGGUGCGGGCGACGGUU..CCCGGAG......................GAAGC..
..UCCGGGCG......AAGA..GGGAA.U.GC.G.G.UGCGGGCCUGACAGGCCC.....
...........CAAGCCGC.GACUGCCC.CC.GCAACUGUAG..GC.GGC.........G
AGCGCGUCCCAUCAUG............................CCCACUGGCCCAGGAC
.........................................................AGG
.CCGGGAAGGG...CGG..G.AC..AAGCCCAGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCGUCGACGGACCUGUAACA
>Rhodobacter_sphaeroi.10 CP000578.1/1093642-1093821
GCUUUGUGGCAGGGGUCAGGUG..CCGCCUU......................CGGG...
.....CGGAG......AAUC..GGGAA.G.CC.G.G.UGG....................
...........AAAUCCGG.CGCGGG.C.CC.GCCGCUGUGA..CG.GG..........G
AUGCUUCGGGCAAGAG............................GCCACCGGUU......
..........................................................CG
.CCGGGAAGGC...GCC..C.GG..CGGCAGAUGA.........................
.........................................ACCG.GAGCCAGAAGACCG
GCCUGACGCAGAGGUUCCCGC
>R.capsulatus.2 AF010496.1/39869-39652
GGCACCUUCGCGGCAGAUGGUU..CCCGGCCAAGCCAC...............GCGCG..
..GCCGGGUG......AAAA..GGGAA.U.AC.G.G.UGUGGUGUAGGCAUCAGCCGCC.
...........AAAUCCGU.AACUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCACCCCCCGGCA.............................ACCACUGGCCCCGACC
GCG......................................................GGG
.CCGGGAAGGU...GGG..G.....AAGCCACGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCAGCGUCAUCAACCGC
>Rhodobacter_sphaeroi.11 CP000661.1/1554899-1555094
CACCACUGCCGCCGCGCUGGUU..CCUGUCC......................GCAAGC.
..GACAGGCG......AAGA..GGGAA.U.GC.C.....C....................
...........CAGA.GGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGGUUGUCC....AU............................GCCACUGGCC.GAAA.
..........................................................GG
.CCGGGAAGGC....GG..A.CC..GCCGCGGGAC.........................
..........................CGCAAGGCCCCACAUCCGC.AAGCCGGGAGACCU
GCCAGCGCUGAGACUUACGGG
>Rhodobacter_sphaeroi.12 CP000577.1/1097204-1097404
AUAUUGAGGAACGGCUUCGGU...UCCGGCG......................UGAUG..
..GCCGGAUG......AAAA..GGGAA.C.GC.G.G.UGCGGGGAGAUCUCCCC......
...........AACUCCGC.GGCUGCCC.CC.GCAACUGUAG..GC.GGC.........G
AGCGACGACCGACGGC............................GCCACUGGGA....U.
.........................................................GUC
.CCGGGAAGGC...CGG..U.CC..GAGCUGCGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCGGAGCGAUCACCCUUUCC
>Rhodobacter_sphaeroi.13 CP000664.1/92637-92429
GUCACGCCAUGCCAUGACGGU...UCCCGAGGGUCGCAC..............GGCCC..
..GAGGGAUG......AAAA..GGGAA.C.AC.G.G.UGAGGGGGAAACCCC........
...........GAGUCCGC.GACUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCCGCCCCGACGGAC...........................ACCACUGGCC..GAU.
..........................................................GG
.CCGGGAAGGU..UCGG..G.GA..CGGCCACGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCGUCGGGCGCAUCCGCGCC
>Rhodobacter_sphaeroi.14 CP000578.1/48121-47921
GGCUACUCAAUCCUCGUCGGU...UUCCG........................UAAG...
.....GAAUU......GAAA..GGGAA.U.CC.G.C.CGCCGGACCUGUCCGG.......
...........CGAACCGG.AACUGCCC.CC.GCAACUGUAG..GC.GGC.........G
AGGAGCUCGCGAUCAAA...........................GCCACUGUGGCCUCAA
.........................................................GCC
.AUGGGAAGGC...CGC..G.CC..AGCCCUGUGA.........................
........................................CCCGC.CAGUCAGGAGACCU
GCCGGCGUUCGAUCUCAACGC
>Rhodobacter_sphaeroi.15 CP000662.1/491640-491462
GUCUCAGCUACUGCGUCAGGUG..CCGCCCG......................CGGG...
.....CGGAG......AAUC..GGGAA.G.CC.G.G.UGC....................
...........GACUCCGG.CGCGGG.C.CC.GCCGCUGUGA..CG.GG..........G
AUGCUUCGGGCAGGAU............................GCCACCGGUU......
..........................................................CG
.CCGGGAAGGC...GCC..C.GG..GGCAGGUGA..........................
.........................................ACCG.GAGCCAGAAGACCG
GCCUGACAAAGAGGUUCCUGC
>R.capsulatus.3 AF010496.1/116971-117194
GCUACUCCAACAGGCGAUGGU...UCCCA........................ACUGG..
..ACGGGAUU......AAUA..GGGAA.C.AC.G.G.UGAGGAUUACCCAUCAGGGGCC.
...........UAAUCCGU.GGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGACGACGGUCGAAG.............................ACCACUGGCCCCCCCG
AUCCACCGGGGAGAA..........................................CGG
.CCGGGAAGGU...GAC..C.CG..AGUUGAUCGA.........................
........................................ACCGC.AAGUCAGGAGACCU
GCCAUCGCUCUGGCGUCGCAA
>Rhodobacter_sphaeroi.16 CP000662.1/326137-325950
GCAUCGUCGCGGUGCCCUGGUU..CCCGCGG......................UGAUCC.
..CGCGGGCG......AAGA..GGGAA.G.CC.G.G.UGC....................
...........AACUCCGG.CGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCCAUCUGCCAU..............................GCCACUGGCC..CCC.
.........................................................GGG
.CCGGGAAGGG...GCA..G.CC..GGCGUCCGAG.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGGGCCUUGACGACCAUCC
>Rhodobacter_sphaeroi.17 CP000661.1/1410118-1410316
CUAUUGAGAAACGGCUUCGGU...UCCGGCG......................UCAU...
..GCCGGAUG......AAAA..GGGAA.C.GC.G.G.UGAGGGGUGCCCCUCC.......
...........AAAUCCGC.GGCUGCCC.CC.GCAACUGUAG..GC.GGC.........G
AGCGACGACCGAUCAC............................GCCACUGGGG....U.
.........................................................UCC
.CCGGGAAGGC...CGG..U.CC..GAGCGAAGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCGGAGCGAUCACCCUUUCC
>Roseobacter.1 AAYC01000003.1/148871-149085
CAUUUAGCCAAAGUGACUGGU...UCUACGAGUGCUUCAA.............UGCGC..
..AGUGGAAGA.....AAUA..GGGAA.C.AC.G.G.UGCGGCGUACCCAAAAGGGACC.
...........AAAUCCGU.GACUGCCC.CC.GCAACUGUGA..GC.GG..........U
GAGUGACGCUGAACAA............................GCCACUGGGG..UUC.
..........................................................UC
.CCGGGAAGGC...CAG..C.UG..AACCAAGAC..........................
.........................................CCGU.GAGUCAGGAGACCU
GCCGGACACAAAGAACGAUAG
>Roseobacter.2 AAYC01000005.1/205052-205266
CUCAUACAUAGCGCUGAUGGUU..UUUCCGGGGGACA................CUCCU..
..GGAAAAUG......AAAA..GGGAA.U.AC.G.G.UGAGGUGUAGCCAACAGGCGCC.
...........AAAUCCGU.GACUGCCC.CC.GCAACUGUGA..GC.GGA.........G
AGCAUUGCUGCAACAA............................GCCACUGCCC..CAA.
.........................................................GGG
.GUGGGAAGGC...GUA..G.CA..AGGCAUCGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCAUCUAGUAGUUCACCAAC
>Roseobacter.3 AAYC01000008.1/31758-31987
GAUAGCGCUGGAGAGGAUGGU...UCCUGCGAGACACAAACUG..........UGUGU..
..CCAGGAUG......AAAA..GGGAA.C.GC.G.G.UGCGGCUGGUACUGAUCAGCC..
...........AAUUCCGC.GACUGCCC.CC.GCAACUGUAA..GC.GG..........U
GAGCGGACCGGGUGA.............................ACCACUGGCAUGGAGU
UUUGCGCUCC...............................................AGG
.UUGGGAAGGA...CCG..G.UU..UCGCAGCGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCAUAUGAAAACUCGAA
>Roseobacter_denitrif.1 CP000362.1/3701518-3701322
GAAAAUGCAGGGCACGAUGGUU..GUUCCGGUU....................CAGGC..
..CGGGACAU......AAAA..GGGAA.C.GC.G.G.UGA....................
...........AAUGCCGU.GGCUGCCC.CC.GCAACUGUAA..GC.GAA.........G
AGUGCCUCUGUCGCAC............................GCCACUGACCGAAAGA
C........................................................GGG
.UUGGGAAGGC..AAAA..G.AG..GCGCGCUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCACAAACGCAACAUAA
>Roseobacter.4 AAYC01000003.1/114698-114499
AAUUUUCCUAUUAAGUAAGGUG..UCGUCCC......................AUUG...
..GGGCGGAG......AAUU..GGGAA.G.CC.G.G.UGU....................
...........GAAUCCGG.CACUGCCC.CC.GCAACGGUAACAUC.GGG.........C
AAGGGCGUAGCAAGA.............................GCCACUGGGACGAGG.
.........................................................ACC
.CCGGGAAGGC...GCU..G.CG..GCCGGUCAUU.........................
.................................UGACCCCGAUGA.AAGUCCGGAAACCA
GCCUUGCCUUGAUAGUCAAAC
>Roseobacter.5 AAYC01000005.1/102065-102276
GCGCAAGGGGGUUCAGCUGGUU..CCUGG........................GGAAA..
..CCUGGGCG......AAGA..GGGAA.U.GU.GAC.AGCUGGAAUUAUCUGGCA.....
...........AAAAGCAC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
UGAGACCGCC....AU............................GCCACUGGG..ACAC.
...........................................................C
.CCGGGAAGGC...AGG..A.GG..GUCGACAGAG.........................
..........................CGCACGCUCUGGCAUCCGC.AAGCCGGGAGACCU
GCCAGCAAGAGGAGAUUUCAA
>Roseobacter.6 AANB01000001.1/655385-655158
CGCAAGGGGGUUUUUGUUGGUU..CCUGCAA......................AUUG...
....CAGGCG......AAGA..GGGAA.U.GU.G....ACAGGCUGAUAGGGAUUUUUGC
UAUCAGCUCU.CAAG.CAC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
AAGGUCUCU....GAU............................GCCACUGGCCCACCG.
..........................................................UG
.CCGGGAAGGC....AA..G.AG..CACCGCAGAC.........................
......................AGGCAUCGCCCGUCGAAAUCCGC.AAGCCGGGAGACCU
GCCAACGCAUGAGACAACGAG
>Roseobacter_denitrif.2 CP000362.1/3352019-3351799
GGAAAGGGUUCUGGGGAUGGU...GUUCGGAAAGCCAAAA.............GCAAU..
..CCGGGCUG......AAAA..GGGAA.U.AC.G.G.UGCGGCGUUCGUAACAGACGCC.
...........AAGUCCGU.GACUGCCC.CC.GCAACUGUAA..GC.GGU.........G
AGCGACCCCGAUGAUC............................ACCACUGGGUGCAUCC
G........................................................CAU
.CCGGGAAGGA...UCG..G.GC..AAGCUGUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCAUCGAUGUAACUUCA
>Roseobacter.7 AAYC01000003.1/275906-275694
CGCCUACCUGUUUUCGAUGGUU..CCUCAGGGCAGA.................AUGCU..
..GAGAGGAUGA....AAAA..GGGAA.C.AC.G.G.UGAGGUGUAGCCAACAGGCGCU.
...........GAAUCCGU.GACUGCCC.CC.GCAACUGUAA..GC.GG..........A
UAGCGACGCCAAGCA.............................CCCACUGGCC.GUAA.
..........................................................GG
.CUGGGAAGGA...UGG..C.GC..AGCCAAGAC..........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCGUGAAUUCAACCAAG
>Roseobacter.8 AAYB01000001.1/493900-494119
GCAAACAGUACCCGUGAUGGU...UCCCAAAGCGCCGAAAA............UGCGU..
..CUGGGAUG......AAAA..GGGAA.U.AC.G.G.UGAGGAAGAGCCAAAGCGCGCC.
...........AAAUCCGU.AACUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCGACCCCGAUGAUC............................ACCACUGAGC.AAAC.
..........................................................GC
.UCGGGAAGGG..AUCG..G.GC..AAGCAGCGAC.........................
.........................................CCGCGAAGUCAGGAGACCU
GCCAUCAAAGGGCGUCGAAAU
>Roseobacter.9 AAYC01000002.1/248003-247819
UGAGCGGAAUCAGUUUCAGGUG..CCCUGCU......................CUUG...
...UAGGGAG......AAUC..GGGAA.G.GC.G.G.UGC....................
...........AAAUCCGC.UGCGUG.C.CC.AACGCUGUAA..CG.GG..........G
ACUGGUCGACGAAUAU............................GCCACUGAAG.UCAC.
..........................................................UU
.UCGGGAAGGG...CGU..C.GA..CUGGGGUGA..........................
.........................................UCCG.AAGCCAGAAGACCG
GCCUGGAACCCAUAUUGCCGC
>Roseobacter.10 AANB01000001.1/641586-641368
GAGCAGUGACCUAUCGAUGGU...UCCACUGAAGCCCA...............AGGCU..
..UUUGGAUG......AAAA..GGGAA.U.CC.G.G.UGAGGUGUAGCCAAAAGGCGCC.
...........AAACCCGG.AACUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCCACUGGGAUAA.............................GCCACUGAUCUGCACA
GC.......................................................AGG
.UCGGGAAGGC...CCC..A.GA..CCGGCCCAGA.........................
........................................CCCGC.AAGUCAGGAGACCU
GCCCUCGUGAGUUGACCAUAG
>Roseovarius.1 ABCL01000001.1/663982-664208
UGCAUACCGGACGUGCAAGGU...UCCUCGUUUGGGCGCAAAG..........CGCCU..
..CGGGGAUG......AAAU..GGGAA.U.GA.C.G.UGCCGGUGGACCCAAUUAGGGCG
CC.........UAUGCGUC.AGCCGCCC.CC.GCGACUGUAA..GC.GG..........C
GAGCCCCUGCCAGAU.............................GCCACUGAGGUGCCUA
UG.......................................................ACC
.UUGGGAAGGC...GGC..A.GA.CAGGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCA
GCCCUGCGUUCGUCAAUCCCG
>R.nubinhibens.1 AALY01000002.1/281935-282138
CUAGGCUAAAGCUCUCAGGGUG..CCGUCCUCG....................CAAGG..
..GGCCGGAG......AAUU..GGGAA.G.CC.G.G.UGC....................
...........AAGUCCGG.CGCUGCCC.CC.GCAACGGUAA..GG.AG..........G
GGUGGUUGGGCGAUAU............................GCCACUGGGCCGCGA.
.........................................................GGC
.CUGGGAAGGU..AGCC..C.GA..UCACAGGCCA.........................
...............................GAUGGCCGUCCACC.AAGCCCGGAAACCA
GCCAUGAGACAACGUCAGAAC
>Roseovarius.2 AAMV01000013.1/62699-62923
UGCAUACGAGAGUGGCAAGGUU..CCUCGUUUCGGUGCAAA............GCGCC..
..GCGAGGAU......AAAU..GGGAA.U.GA.C.G.UGCCGGCGGACCCAAUCAGGGCG
UC.........CAUGCGUC.AGCCGCCC.CC.GCGACUGUAA..GC.GG..........C
GAGCCCCUGCCAGAU.............................GCCACUGAGGUGUAAA
A........................................................CCC
.UUGGGAAGGC...GGC..A.GA.CAGGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCA
GCCCUGCGUUUGUUAAUCCCG
>R.nubinhibens.2 AALY01000002.1/134769-134968
AGCAUUGUCGCCCCUGAUGGUU..GCCCGGG......................ACGAAU.
..CCGGGCUG......AAAA..GGGAA.C.GC.G.G.UGCGGGUCUGACCC.........
...........AAUUCCGC.GGCUGCCC.UC.GCAACUGUAA..GC.GG..........C
GAAUGUCUCGCACCAU............................GCCACUGGCC..CUC.
.........................................................GGG
.CUGGGAAGGC...GCG..A.CC..CAUGAUGAC..........................
.........................................CCGC.AAGCCAGGAGACCU
GCCAUCCAGGGCGCUGUCCGG
>Roseovarius.3 AAMV01000014.1/59909-60128
UUAGGCUGAUCCUGUCAUGGUG..CCAUGCCGACAGCAGUCCACUGC......UCUCG..
..GGAUGGAG......AAUU..GGGAA.G.CC.G.G.UGC....................
...........GAUUCCGG.CGCUGCCC.CC.GCAACGGUAA..GG.GA..........G
GGCGUUUCGGCGAUAU............................GCCACUGGGCGACAA.
.........................................................UGC
.UCGGGAAGGU...GCC..G.CG..ACGCGAGGGU.........................
............................CAUCCGGCCCGCCAUCC.AAGCCCGGAAACCA
GCCUUGGCGUGACGUCGAAUC
>Roseovarius.4 ABCL01000003.1/119153-118953
CUAGGCUGAUCCUGUCAGGGUG..CCGCCCU......................UUGG...
...GGCGGAG......AAUU..GGGAA.G.CC.G.G.UGU....................
...........AACUCCGG.CGCUGCCC.CC.GCAACGGUAA..GG.GA..........G
GGCAUUUCGGCGAUAG............................GCCACUGGGCAAUUU.
..........................................................GU
.CCGGGAAGGU...GCC..G.AG..AUGCGAGGGC.........................
............................CAUUUGGCCUGCCGCCC.AAGCCCGGAAACCA
GCCUUGGCGGAUCGUCGAAUC
>R.nubinhibens.3 AALY01000001.1/1587847-1587653
GGGUGUCACUGCGGCGUCGGU...UUUCG........................AUGG...
.....AAACU......AAUA..GGGAA.U.CC.G.C.GGCGUCCAGCAGGGCG.......
...........UCAACCGG.AACUGCCC.CC.GCAACUGUAG..GC.GGC.........G
AGCUGCAUCUUCAGA.............................ACCACUGGGC..CGA.
.........................................................GGU
.CUGGGAAGGG...AAG..A.UG..ACGCCAUGAG.........................
.........................................CCGU.GAGUCAGGAGACCU
GCCGACGCAUAACCUGAAACC
>Ruegeria.1 CP000376.1/216700-216497
UACAACUCUGCCCUACGAGGUG..CUGUCCG......................GGCUUUC
C.GGACGGAG......AAUU..GGGAA.G.CC.G.G.UGC....................
...........GAUUCCGG.CGCUGCCC.CC.GCAACGGUCA..UG.GGAUU.......C
GCGGGCGUAACAUCU.............................GCCACUGGGAGGAGG.
..........................................................AC
.CCGGGAAGGC...GUU..G.CG..CUCCGACCAG.........................
................................CAGGUCACCCCCA.GAGCCCGGAAACCA
GCCUCGGCAGAUAUCGUCAAC
>Ruegeria.2 CP000377.1/548354-548161
UCAAUAUCGUGUUGCUUUGGUU..CUUUCGA......................GGCGACU
..CGCAAGCG......AAGA..GGGAA.A.CU.G.G.UGA....................
...........AAAUCCGG.UGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
AAGCCCUGCCC...GU............................GCCACUGACGCAUCGC
U........................................................GCG
.UUGGGAAGGC...GGG..A.GG..GGGCGUUUGA.........................
........................................GCCGCGAAGCCAGGAGACCU
GCCAGAGCACGACACACGACG
>Ruegeria_pomeroyi_DS.1 CP000031.1/3073055-3073267
GGCUAAAUGAAGGGGUCUGGU...CCUGCCGGAG...................CAAUC..
..CGGAUGCU......AAGA..GGGAA.U.UU.G.G.UGCGACCGCCCGUCGGUU.....
...........CAGGCCAA.AGCCGCCC.CC.GCGACUGUAA..GC.GGU.........G
AGCCUCUGUUCAACCA............................GCCACUCCCGGGUUCG
CCC......................................................CCG
.GGGGGAAGGC...GAA..C.AG..AGGCACUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAGACAGGCACUGUAACAC
>Ruegeria_pomeroyi_DS.2 CP000031.1/3757898-3758110
CGCUACCGCUGGGUCGAUGGU...UCCCGGUCGUGC.................AUGCG..
..CCGGGAUG......AAAA..GGGAA.C.AC.G.G.UGCGGCCCUCUGGCGACAGAGGA
CC.........AAUGCCGA.GACUGCCC.CC.GCAACUGUAA..GC.GG..........U
GAGCGAUGCCGAAAU.............................GCCACUGGCC..CCC.
.........................................................GGG
.CCGGGAAGGC...CGG..C.AA..AGCCCGGAC..........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCGCAACCGUAACUCGA
>Ruegeria_pomeroyi_DS.3 CP000031.1/3058882-3059105
CCGCAUGUCCGCCCUGUUGGUG..UCCGGGC......................AACC...
.....GGAUG......AAAA..GGGAA.U.GC.G.C.CAGCGGUUCCGGGACAUGAUCCC
GGGCAGCCG..UCAAGCGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGGGUGCCC....AA............................GCCACUGGCC.AAAU.
..........................................................GG
.CCGGGAAGGC....GG..G.AC..AUCCGCCAGA.........................
..........................GCAGCGCUCUGACAUCCGC.AAGCCGGGAGACCU
GCCAGCACCCGAACUGCAACC
>Ruegeria.3 CP000377.1/2318941-2319180
GCGCAAGGAAAUUUCGUUGGUU..CCCGAAGGUGA..................CAGCC..
..UUUGGGCG......AAGA..GGGAA.U.GU.G.U.CGGGCCGGGAUCAUCCUUGCU..
...........CCAAACAC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGGUCUUCC...AAC............................GCCACUGGCGCGCCCC
UUGUGGGC.................................................AGG
.CCGGGAAGGC...AGG..G.AG..ACCGUUCGCG.........................
....................CCCCACUCGGGGCGGAUCUAUCCGC.AAGCCGGGAGACCU
GCCAACGCGUGAGAACCGGCG
>Ruegeria.4 CP000377.1/2333297-2333511
GCAUUGUCGACGGCAUACGGU...GUCCCAGAGCGCAA...............AGCGC..
..CGGGACUG......AAAC..GGGAA.U.GA.G.G.AACGGCGGACCCAAUCGCGGCGC
C..........AAAGCCUC.AACCGCCC.CC.GCGACUGUGA..GC.GG..........U
GAGCGACAUUCAGCA.............................UCCACUGGCC..GCU.
.........................................................GGG
.CCGGGAAGGA...GAA..U.GA..UCGCCGCGAC.........................
.........................................CCGC.GAGUCAGGAGACCG
GCCGUAUGAAACGAGGACAGU
>Ruegeria.5 CP000377.1/3101368-3101583
CCGCAUGAGAGGGGCGAUGGU...UCCCCGACGCCUAA...............GGCCG..
..GUGGGAUG......AAAA..GGGAA.U.UC.G.G.UGCGGAGGAGCCAAAGGGCGCC.
...........AAAUCCGA.AACUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCGCCCCGUCACAG............................CCCACUGAUCCUCAU.
.........................................................GGA
.UCGGGAAGGG...AGG..G.AC..GCGCAAUAAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCGCGACUUUUUAACCA
>Ruegeria.6 CP000377.1/185492-185258
CGUAGCAUCCAGACAGAUGGU...UCCUGCCUCUGU.................UUGGG..
..GUGGGAUG......AAAA..GGGAA.U.AC.G.G.UGAGGCUUUGGACCAUUGGGUCC
CGCC.......AAGUCCGU.GACUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGUUCCCCGGCAAAG..............................CCACUGACCCCAACG
UCGUAACCGGCAAAAAA........................................GGG
.UCGGGAAGG....GCC..G.GU..UCGCGAUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCGGCAAUGUAAACCUG
>Sagittula_stellata_E.1 AAYA01000018.1/10947-10742
CAAGGAAAUCGCAUGUCCGGU...UCCGGAGUUUU..................CACGC..
..UUCGGAGGA.....AAGA..GGGAA.U.GC.A.G.UGCGGCACGCGAGUGCC......
...........UACCCUGC.AGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
AAGCAGGGCUGAUAU.............................GCCACUGGA..GAAA.
...........................................................U
.CCGGGAAGGC...CAG..U.CCAGAUGCGAUGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGGACUGGCGCCUCAGGAA
>Sagittula_stellata_E.2 AAYA01000008.1/50513-50733
UGCUUAACGAUCCGCGAUGGU...UCCCGGAACGCCAGCAA............GCCAA..
..CCGGGAUG......AAAA..GGGAA.C.AC.G.G.UGAGGAUGUCCGCAAGGUGCC..
...........GAAUCCGC.GACUGCCC.CC.GCAACUGUGA..GC.GG..........A
GAGCGAUCCUGAGAAC............................ACCACUGGGCCGGUAG
GC.......................................................GGC
.UCGGGAAGGU...UCG..G.GA..AAGCGUUGAC.........................
.........................................CCGC.AAGUCAGGAGACCU
GCCAUCUCCGGCGCGCUCCGC
>Sagittula_stellata_E.3 AAYA01000006.1/294690-294473
CGCAUCAGCCGGAGUGCUGGUG..CCUGUGU......................CUAG...
....CAGGUG......AAAA..GGGAA.U.GC.G.C.AGCCCCGCGUCGGGG........
...........UCAGGCGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
AAG..GGCCCGAA...............................GCCACUGGCG.ACAU.
..........................................................CG
.CCGGGAAGGC...CGG..G.UU..CCGUUGGGAU.........................
................CGGCAGGACUGCCUGCCGCCCAGUUCCGC.AAGCCGGGAGACCU
GCCAGUGGCCGCGCCGUGGAA
>Sagittula_stellata_E.4 AAYA01000006.1/51136-50945
GCGAUCCCGUCCGUGUCAGGUG..CCUCC........................GUCCU..
..CGGGGGAG......AAUC..GGGAA.G.CC.G.G.GGC....................
...........AGAACCGG.CGCGGG.C.CC.GCCGCUGUGA..CG.GG..........G
ACGGGGCGGACACAUG............................GCCACUGGGCGUCAGU
CAGG.....................................................CGC
.UCGGGAAGGC...GUC..C.GU..UCCGGAUGA..........................
.........................................UCCG.AAGCCAGAAGACCG
GCCUGACGGCAUGGCGGCCCC
>Sulfitobacter.1 AALV01000003.1/110855-110656
UGUCAUCGAAACCGGGUCGGU...UUCCU........................UCGG...
.....GAAAU......AAUA..GGGAA.U.UC.G.C.CAUCCGCCCUUUGGUGUGGA...
...........UGAACCGG.AACUGCCC.CC.GCAACUGUAG..AC.GG..........U
GAGCUACCUCCAUCAU............................GCCACUGGGCCUAAA.
.........................................................GGU
.CCGGGAAGGC...GGG..G.AC..AGCCGCGAU..........................
.........................................CCGU.CAGUCAGGAGACCU
GCCGACACUGAACCUGAAACA
>Sulfitobacter.2 AALV01000001.1/473478-473696
CAAUGCAGGGCGUAUGUUGGUU..CCUGUCC......................CAGA...
....CAGGCG......AAGA..GGGAA.C.GC.G.A.UACGCAUUGAUCCAGCCUUGGGU
CAGCGC.....CAAG.CGC.AGCCGCCC.CC.GCGACCGUGA..CC.GG..........A
GAGAGCUUUCAA.................................CCACUGGCC.CGCA.
..........................................................GG
.CUGGGAAGG....UGA..A.GG..UUCGCAAGGC.........................
...........................AAGCUGCCUUAGAUCCGC.AAGCCGGGAGACCU
GCCAGCAUAGUUUGUAACGGG
>Sulfitobacter.3 AALV01000001.1/486810-487026
UGACCACCUAUUCCGGACGGUU..CCCCGUGCGCCUUCG..............GGCAA..
..UCGGGGUG......AAAA..GGGAA.U.AC.G.G.UGCGGUGCCAAAGCAAAGGUGCC
...........AAAUCCGG.AACUGCCC.CC.GCACCUGUAA..GU.GA..........A
GAGCAACCCGCAUU..............................GCCACUGGGCCACAC.
.........................................................CGC
.CUGGGAAGGC...GCG..G.CA..CGCAUGGAC..........................
.........................................GCACAAAGUCAGGAGACCU
GCCGUCAUGGGGAUGAUCCCC
>Sulfitobacter.4 AALZ01000005.1/160175-160353
GGCCCAAUGGCCGGGUCUGGUG..UCCGCCU......................CGC....
.....GGAAG......AAUC..GGGAA.G.CU.G.G.UGA....................
...........AACUCCGG.CACGUG.C.CC.AACGCUGUAA..UG.GG..........G
AUGGUUUGCGCAUAG.............................GCCACUGGAA....U.
.........................................................AUU
.CCGGGAAGGC...GCG..C.GG..ACCAGACGA..........................
.........................................CCCU.AAGUCAGAAGACCG
GCCAGACAGUACAGCUUGCCC
>Granulibacter_bethes.1 CP000394.1/902076-901862
CUAAGCAUGCCUGGUCGUGGUU..CUGCGGGUCCGUCAAAGAC..........GAACG..
..CCGGAGCC......AAGA..GGGAA.U.CC.G.G.UGCGCAUCAGC............
...........AAAGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCUGCAUCCACCGAC...........................GUCACUGAGGCUUCC.
.........................................................GCC
.UCGGGAAGAC..AGGA..UCGC..AGGCAAUGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCACGACACCAUAAUCGUCC
>M.magnetotacticum.1 AAAP01003877.1/22278-22051
AUUAUAGUGCCGGGUGAUGGUU..CCCCGCGUCCGCUU...............AGGGC..
..AAGGGGUG......AAAAU.GGGAA.C.GU.G.G.UGCGGCGCCCGAAAAGGGGGCC.
...........AAUUCCGC.GACUGCCC.CC.GCAACUGUAG..GC.GGA.........G
AGGUUCCGGCCGUUAGAGAC........................GCCACUGGCCCUGAAA
UG.......................................................GGG
.CUGGGAAGGC.UAUGC..C.GG..ACCCAACGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCAUCAUCGAGAGUCGCUUG
>M.magnetotacticum.2 AAAP01002228.1/195-394
CCUAGCGUGGCCGUCGACGGU...UCCCG........................AAAG...
.....GGAUC......AAAA..GGGAA.C.GC.G.G.UGAAGGGCCUUUGCCC.......
...........GAUCCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GGA.........G
AGCCCUCCAUCACCAC............................GUCACUGGGCGAGCCU
U........................................................CGC
.CUGGGAAGAC...GAU..G.GA..GGACAACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>M.magnetotacticum.3 AAAP01002012.1/63-265
GCACAUCCUGGAAGUGACGGU...UCCCU........................UCGG...
.....GGAUC......AAAA..GGGAA.C.GC.G.G.UGAGGACUUUCGGGUCC......
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCCUUUUCACCACCGAU..........................GUCACUGGAUGAGCCU
.........................................................CAU
.CCGGGAAGAC..GGUG..A.GA..CGGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>M.magnetotacticum.4 AAAP01003520.1/1076-875
GGCCAAGAUCAUCCCGACGGU...UCCCG........................CAAG...
.....GGAUC......AAAA..GGGAA.C.GC.G.G.UGAGGACCGUUCGGUCC......
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCUUUUCGCCACCGAC..........................GUCACUGGGCCACCU.
.........................................................CGC
.CCGGGAAGAC..GGUG..A.GA..AGGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>M.magnetotacticum.5 AAAP01003421.1/1751-1551
GGUUAGAAGGUCAGCGACGGU...UCCCU........................UCGG...
.....GGAUC......AAAC..GGGAA.C.GC.G.G.UGAGGGUUCGCCCUC........
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCUUUUCACCACCGAU..........................GUCACUGGAUGGGCCU
.........................................................CAU
.CCGGGAAGAC..GGUG..A.GA..GGGCGACGAC.........................
.........................................CCGC.GAGCCAGGAGACCU
GCCGUCAGCCGUGGUCACACG
>Magnetospirillum_mag.1 AP007255.1/306940-307165
AUUAUAGUGCCCGGCGAUGGUU..CCCCGCGACCGGCG...............ACGGC..
..GCGGGGUG......AAAAU.GGGAA.C.GC.G.G.UGAGGCACCCGAAAAGGGGGCC.
...........GAUUCCGC.GACUGCCC.CC.GCAACUGUAG..GC.GGA.........G
AGGUUCCGGCCCUGAGAGAU........................GCCACUGGCCCGAAAA
.........................................................GGG
.CUGGGAAGGC.UAUGC..C.GG..ACCCAACGAC.........................
.........................................CCGC.GAGUCAGGAGACCU
GCCAUCAUCGAGAGUCGCUUG
>M.magnetotacticum.6 AAAP01003109.1/772-976
CAAAGGUCGUGCGGCCAAGGUU..CCUGCGGACUC..................UUCCC..
..CGUGGGCU......AAGA..GGGAA.U.CC.G.G.UCGGUUCGUCC............
...........GAUGCCGG.AGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAGCUCCCGCCGCGAGAG..........................GUCACUGGUGCCCCG.
..........................................................CA
.CCGGGAAGGC.CGGGC..G.GG..GGCGCUGAC..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUCGGCACGACGAUAUUCC
>Rhodospirillum_rubru.1 CP000230.1/1340533-1340749
GGCUAGCCUGCGGCUGACGGU...UCCCCCCAAGCGCA...............AGCCG..
..AAGGGAUU......AAAA..GGGAA.C.AC.G.G.UGCAGGCGAAGGAUUUGUCC...
...........GAAACCGU.GGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCUUCCUCCGAUGAAA..........................ACCACUGGGGCGCGU.
.........................................................GCC
.UUGGGAAGGG...GGA..U.GA..AGGCGAUGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUCCGACCCUAAUCCAUG
>Rhodospirillum_rubru.2 CP000230.1/2009119-2009340
GUAAGCUUUGAGGAUCGUGGUU..CUUUGGCACCGUUUUGUC...........GGGUG..
..CCGGAGCU......AAGA..GGGAA.U.CC.G.G.UGAGCCGCGUUUUGGC.......
...........GAUGCCGG.AGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGCCGCUGUCAAGACGU..........................GCCACUGCCCCCGGCA
AGG......................................................GGG
.GUGGGAAGGC.CAGAC..A.GC...GGCGACGAC.........................
.........................................CCGU.AAGCCAGGAGACCU
GCCGCGAUGUCAUAACCUCCC
>Rhodospirillum_rubru.3 CP000230.1/1707586-1707782
UAGCCUAUGUUGUGUUACGGUU..CCCCGGACACCAC................AAUAU..
..CCGGGGCU......AAGA..GGGAA.G.CC.G.G.UGC....................
...........GAUGCCGG.CGCUGCCC.CC.GCAACUGUCA..GC.GGC.........G
AGCCUUCAUCCAUUCAU...........................GCCACUGGGG.AAAU.
..........................................................UC
.CCGGGAAGGC...GGA..C.GA..AGGCGACGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCGUGACCCUUGAAACGUCC
>Rhodospirillum_rubru.4 CP000230.1/1501900-1501675
UACCGUAUUUAGCGUUACGGUU..CCUUGGGUAUGC.................AAUAU..
..CUAGGGUG......AAGA..GGGAA.G.AC.G.G.UGCGCCCUUGAAGGGC.......
...........AAUGCCGG.CGCUGCCC.CC.GCAACUGUGA..GC.GGC.........G
AGCCCGCGUCCAAGACU...........................GCCACUGGUGCGCCGG
UCCUUCGGAACCG............................................GCC
.CCGGGAAGGC..CGGA..C.GG..GGGCUGUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCGUAAUGGCCGCAACGUCC
>Erythrobacter_litora.1 CP000157.1/1649862-1649676
CGGCUGCUUCACGUCACGGGUU..GCCGC........................GUAAC..
..ACCGGCCG......AAGA..GGGAA.G.GG.A.G.UGC....................
...........GAUGCUCC.CGCUGCCC.CC.GCAACUGUGA..CC.GGG.........G
AGCGACCCUGCCAAGG............................GCCACUGGU...UUC.
.........................................................G.A
.CCGGGAAGGC..GGCG..G.GG..AAGCGACGAU.........................
.........................................CCGG.GAGCCAGGAGACCU
GCCCGAGACCGUCGCUUGAGC
>Novosphingobium_arom.1 CP000248.1/1228186-1228384
UGGCGCGCCGACGCCAGAGGUG..CCCGGUA......................ACAC...
.....GGGCU......AAGA..GGGAA.G.CC.G.G.UUC....................
...........GAUUCCGG.CGCUGCCC.CC.GCAACUGUAA..CC.GGA.........U
AGCGCGUCGCCCAUUCAU..........................GCCACUGGUGUCGGCU
UCGGCCA..................................................GCA
.CCGGGAAGGC..GGGC..G.AC..GAGCCGUGAC.........................
.........................................CCGG.AAGCCAGGAAACCU
GCCCUUGGUUGUCGUUCCGCG
>Sphingomonas_wittich.1 CP000699.1/5269738-5269503
UCCAAUGGAUGCUGUCGAGGUU..CCCUGCUCGCGAUCCGGCAACGGGUC...GCGCG..
..GCAGGGCU......AAGAC.GGGAA.G.CC.G.G.UGACGUCCGCGAGGACG......
...........GAGUCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGCGGCGGUUUCAACCAU..........................GCCACUGGCGCCCCGC
GAGGA....................................................GCG
.CCGGGAAGGC.CGGAG..C.CG..CCGUGACGAC.........................
.........................................CCGU.GAGCCAGGAGACCU
GCCUCCGACGCGAUAACGUUC
>Sphingomonas.1 AAQG01000024.1/17748-17526
GUUGAAGGAGCCUGUCGAGGUU..CCCCGCUUCAGGCA...............UGACG..
..GCGGGGCU......AAGAC.GGGAA.G.CC.G.G.UGGUGCCCUUUGGGCA.......
...........GAGUCCGG.CGCUGCCC.CC.GCAACUGUAA..GC.GGC.........G
AGUGGUGGCUCCAUUUUGU.........................GUCACUGAGCUUUUGC
ACGA.....................................................GGC
.UCGGGAAGGC.CGGAG..C.CA..UUGCGAUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCUUCGACGGCAUAACGUUC
>Sphingomonas.2 AAQG01000005.1/141632-141818
AACGGCCGCGCUGCGACAGGU...UCCCC........................GGCGA..
..CGGGGAUG......AAAAU.GGGAA....C.G.G.AUA....................
...........ACAUCCG...GCUGCCC.CU.GCAACUGUAU..GC.GG..........U
GAGUCAUCGGCCAUAU............................GCCAUUGGAAGCGCAG
.........................................................CUU
.CCGAGAAGGC..GACC..G.AC..CGGCGUUGAC.........................
.........................................CCGC.AAGCCAGGAGACCU
GCCCGUCGCCGUCGUCUUUCG
>Sphingomonas_wittich.2 CP000699.1/3500758-3500554
AAAGCGCACGGCGCGACAGGU...UCCCGGA......................AACG...
.....GGAUC......AA.A..GGGAA.U.UC.G.G.AAGCGGGAUCGUCCCG.......
...........CAAGCCGA.AGCUGCCC.CC.GCAACUGUGA..UC.GG..........C
GAGCGAUCGUCCAUCCCGC.........................GUCACUGGAUGCUCCG
G........................................................CAU
.CCGGGAAGGC.CGGAC..G.AG..ACGCGACGAC.........................
.........................................CCGA.GAGCCAGGAGACCU
GCCCGUCGCGGUCGUUCCAUC
>Z.mobilis.1 AF193754.1/4343-4142
GCAAUGAGGAAGGAUUAAGGUU..CUUUGUC......................AUUG...
..GCAAAGCU......AAGA..GGGAA.A.CU.G.G.UGCGAAAGAAUUUUC........
...........AAAGCCAG.UGCUGCCC.CC.GCAACUGUAA..AC.GG..........C
GAGCAAAGAUCAAAAU............................GCCACUGAUA.UUAU.
..........................................................UA
.UCGGGAAGGC..UGAU..C.GG..ACGCGGUGAC.........................
.........................................CCGUCAAGUCAGGAGACCU
GCCUUAAACCAAGUCAUCCAC
>Z.mobilis.2 AF193754.1/24966-24788
GGAAAUUUUUUUGCAUAGGGU...UUCCUUC......................GAGUG..
..AAGGAA........AAUU..GGGAA.C.AA.G.G.UGC....................
...........AAAACCUU.GGCUGCCC.CU.GCAACUGUAA..AC.AG..........U
UGA..AACGCCAAAAA............................GCCACUGAAU....C.
.........................................................UAU
.UCGGGAAGGC...GGU..U.GU..UUCGAUG............................
.........................................CUGU.GAGCCAGGAGACCG
ACCCUAUGUAAUCGUUCCACG
>B.ubonensis.1 ABBE01000883.1/365-556
UACGCCCGUUCGUUCGCCGGC...GCCCC........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGC.GCGUGCCGC..........
...........GCCGCUGU.GGCUGCCC.CC.GCAACUGUAG..GC.AGCG........A
GCCCGCCUCCAUCUCGC...........................GCCACUGG...CUUG.
.........................................................U..
.CCGGGAAGGC..CUGG..A.GC..GGGCGUCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCUUGAAAGUGCGUGCG
>Burkholderia_xenovor.1 CP000271.1/1989295-1989475
AGGCAUAAUACAGCCGCCGGUU..GCCCU........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.UGC....................
.............CACUGU.GGCUGCCC.CC.GCAACUGUAU..GC.AGCG........A
GUCCGCCUGCGCUUCAC...........................GCCACUGGUU......
.........................................................CGA
.CCGGGAAGGC...CGC..A.GC..GGACCAUGAC.........................
.........................................CUGC.CAGCCAGGAGACCU
GCCGGCGAGACUGUUCGUGCC
>Burkholderia_cenocep.1 AAKX01000098.1/49369-49176
UUACCCUUGCGCGCUGAUGGU...UCCCGGA......................GACG...
.....GGAUC......AAAA..GGGAA.C.GC.A.G..GCGAGGCAACGCCUC.......
...........GAAGCUGC.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAAUCCGUGCCACCGCAU..........................GCCACUGG...GAAA.
............................................................
.CCGGGAAGGC..CCGC..A.CG..GACGACGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCGACCCGAGGUCCAGC
>Burkholderia_multivo.1 AP009385.1/1806044-1805855
UACGCGCGUUCGUUCGCCGGU...GCCCU........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGCGCAUCGCGCC..........
...........G...CUGU.GGCUGCCC.CC.GCAACUGUAG..AC.AG..........C
GAGCCGAUCUCCCCCUCAU.........................GCCACUGGU...UUC.
...........................................................A
.CCGGGAAGGC..CGGG..A.GC..AGGCGCCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCCUGAAAGUGCGUGCG
>Burkholderia_multivo.2 AP009386.1/1277939-1278133
UUACCCUUGCGCGCUGAUGGUU..CCCGCGA......................GACG...
.....GGAUC......AAAU..GGGAA.C.GC.A.G.UGACGGCGCACGCCG........
...........GAAUCUGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAGUCCGUGCCCUUCGC...........................GCCACUGG...GAGA.
............................................................
.CCGGGAAGGC..GGGC..A.CC..GGGCGGCGAC.........................
.........................................CCGC.GAGCCAGGAGACCA
GCCAUCGACCGAGGUCCAAGC
>B.ambifaria.1 CP000440.1/1742843-1742651
UACGGCCGUUCGUUCGCCGGU...GCCCU........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGCGCGUAUCGC...........
...........GCUGCUGU.GGCUGCCC.CC.GCAACUGUAG..AC.AG..........C
GAGCCGAUCUCCCCCCUCAU........................GCCACUGGU...UUC.
...........................................................A
.CCGGGAAGGC..CGGG..A.GC..CGGCGCCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCCUGAAAGUGCGUGCG
>B.ambifaria.2 CP000441.1/778547-778740
UUACGCUUGCGCGCUGAUGGU...UCCCGGG......................AACG...
.....GGAUC......AAAA..GGGAA.C.GC.A.G.GAGAGGCAGCGCCUC........
...........GAAUCUGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAAUCCGCGCCACCACAC..........................GCCACUGG...GAAA.
............................................................
.CCGGGAAGGC..CGGC..G.CG..AAUAACGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCGACCCGAGGUCCAAG
>Burkholderia_ambifar.1 CP001025.1/1786797-1786605
UACGGCCGUUCGUUCGCCGGU...GCCCU........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGCGCGCAUCGC...........
...........GCCGCUGU.GGCUGCCC.CC.GCAACUGUAG..AC.AG..........C
GAGCCGAUCUCCCCCCUCAU........................GCCACUGGU...UUC.
...........................................................A
.CCGGGAAGGC..CGGG..A.GC..CGGCGCCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCACUGAAAGUGCGUGC
>Burkholderia_vietnam.1 CP000615.1/1891336-1891529
UUACGCUUGCGCACCGAUGGU...UCCCGGA......................GACG...
.....GGAUC......AAAA..GGGAA.C.GC.A.G.CAGAGGCCGAGCCUC........
...........CAAUCUGC.GGCUGCCC.CC.GCAACUGUAA..GC.GG..........C
GAAUCCGCGCCACCACGC..........................GCCACUGG...GAAA.
............................................................
.CCGGGAAGGC..CGGC..G.CG..GAUGACGAC..........................
.........................................CCGC.AAGCCAGGAGACCU
GCCAUCGACCCGAGGUCCAGC
>Burkholderia_cenocep.2 CP000379.1/1074555-1074362
UUACCCUUGCGCGCUGAUGGU...UCCCGGA......................GACG...
.....GGAUC......AAAA..GGGAA.C.GC.A.GGUGAGGCAACGCCUC.........
...........GAAGCUGC.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAAUCCGUGCCACCGCAU..........................GCCACUGG...GAAA.
............................................................
.CCGGGAAGGC..CCGC..A.CG..GACGACGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCGACCCGAGGUCCAGC
>Burkholderia_vietnam.2 CP000614.1/1755111-1754922
UACGGCCGUUCGUUCGCCGGU...GCCCU........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGCGCGCCGCGCC..........
...........G...CUGU.GGCUGCCC.CC.GCAACUGUAG..AC.AG..........C
GAGCCGCGCUCCGCCACAU.........................GCCACUGGU...UUC.
...........................................................A
.CCGGGAAGGC..CGGG..A.GC..CGGCGCCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCCAGAAAGUGCGUGCG
>Burkholderia.1 CP000151.1/1842062-1841871
UACGGCCGUUCGUUCGCCGGU...GCCCC........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGCGCGCCACGC...........
...........GCCGCUGU.GGCUGCCC.CC.GCAACUGUAG..AC.AG..........C
GAGCCGAUCUCCCCCUCAU.........................GCCACUGGU...UCC.
...........................................................A
.CCGGGAAGGC..CGGG..A.GC..CGGCGCCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCCUGAAAGUGCGUGCG
>Burkholderia_cenocep.3 CP000958.1/1840255-1840064
UACGGCCGUUCGUUCGCCGGU...GCCCU........................UCGG...
.....GGCCG......AAGA..GGGAA.C.AC.A.G.GGC.GCCCCCCGC..........
...........GCCGCUGU.GGCUGCCC.CC.GCAACUGUAG..AC.AGCG........A
GCCGAGCUCCCCCUCAU...........................GCCACUGGU...UUC.
...........................................................A
.CCGGGAAGGC..CGGG..A.GC..CGGCGCCGAC.........................
.........................................CUGU.CAGCCAGGAGACCU
GCCGGCCAGAAAGUGCGUGCG
>Burkholderia.2 CP000152.1/1678463-1678270
UUACCCUUGCGCGCUGAUGGU...UCCCGGA......................AACG...
.....GGAUC......AAAA..GGGAA.C.GC.A.G.GAGAGGCAGCGCCUC........
...........GAAUCUGC.GGCUGCCC.CC.GCAACUGUGA..GC.GG..........C
GAAUCCGUGCCACUGCAU..........................GCCACUGG...GAAA.
............................................................
.CCGGGAAGGC..CGGC..A.CG..AAUCAGGAC..........................
.........................................CCGC.GAGCCAGGAGACCU
GCCAUCGACCCGAGGUCCAAG
>Burkholderia_pseudom.1 ABBP01000344.1/210-416
AUACAGCGUCCGUCGACCGGC...GCCCC........................ACGG...
.....GGCCC......AAGA..GGGAA.C.GC.A.G.GGCGCGCCGCGCC..........
...........G...CUGC.GGCUGCCC.CC.GCAACUGUGA..GC.AGC.........G
AGUCCGCAUCCGAUCCAC..........................GCCACUGGCCACGCCG
CCCUUUCGCGG..............................................CCG
.CCGGGAAGGC..CCGC..U.GC..GGACGACGAC.........................
.........................................CUGC.CAGCCAGGAGACCU
GCCGGGACGUUUCGUUCGUGC
>Ralstonia_solanacear.1 AL646053.1/765144-764965
AUCCCGCCUCACGAUGAUGGUG..CCCUU...............................
..CCAGGGUG......AAAC..GGGAA.C.GC.G.G.UGC....................
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GA..........C
GAGUCUGCGCCAACCA............................GCCACCGCACGAUGC.
............................................................
..CGGGAAGGC...GGC..G.CC..AGGCGAUGAC.........................
.........................................GCGC.GAGCCAGGAGACCG
GCCAUCUCCUUCUGUCGACGU
>Ralstonia_solanacear.2 AAKL01000016.1/79085-78906
AUCCCGCCUCACGAUGAUGGUG..CCCUU...............................
..CCAGGGUG......AAAC..GGGAA.C.GC.G.G.UGC....................
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GA..........C
GAGCCAGCGCCAACCA............................GCCACCGCACCAUGA.
............................................................
..CGGGAAGGC...GGC..G.CC..GGGCGAUGAU.........................
.........................................GCGC.GAGCCAGGAGACCG
GCCAUCUCCUUUUGUCGACGU
>Acidovorax.1 CP000539.1/3361819-3361627
UUAUCAUCCCCGUCCUCAGGUG..CCCGCUGCCGC..................AAGGC..
..AAAGGGAG......AAUC..GGGAA.G.GC.G.G.UUG....................
...........GAGUCCGC.CGCGUG.C.CC.AACGCUGUAA..GG.AA..........G
AUGACCCCCGCUCAAU............................GCCACUGGCCGCCAA.
..........................................................GG
.CCGGGAAGGC...GCG..G.CG..GGUCAGAUGA.........................
.........................................AUCC.AAGCCAGAAGACCG
GCCUGAACGUUCAUCGCGCUG
>Chromobacterium_viol.1 AE016825.1/1690702-1690517
AUUCUUGCCAUUCUUGACGGUG..CCCCA...............................
..AAAGGGUG......AAAC..GGGAA.C.GC.G.G.UGG....................
...........AAUGCCGC.GGCUGCCC.CC.GCAACUGUAA..GC.GC..........A
GAGUCCACGCCUGAC.............................GCCACUGGCCCUUAGC
A........................................................AGG
.UCGGGAAGGC...GGC..G.CC..CGGACGGCGA.........................
........................................CGCGC.GAGCCAGGAGACCG
GCCGUCAAACGUGUCGACGCA
>Nitrosomonas_eutroph.1 CP000450.1/2027042-2027265
CUCCACUCCCUUGCUUGAGGUG..UCCCAGAUGCAUU................UGCAC..
..GAGGGAUG......AAAC..GGGAA.G.CC.G.G.UGCGCACUGGAAUCAAACAAUGC
...........AAUGCCGA.CACUGCCC.CC.GCAACGGUAA..AU.GA..........G
UCAAUAUUCUGCACAC............................GCCACUGUGCCAUCC.
.........................................................GGC
.ACGGGAAGGC..GCAG..A.AU..CAGGAAAUAA.........................
...................................AUCUACUCAC.AAGUCCGGAGACCG
GCCUGAAGCAAUAUCAUGUUA
>Nitrosomonas_europae.1 AL954747.1/696804-696577
UCUGCGCCCCUUGUUUGAGGUG..UCCCAGAUGCAUU................UGCAC..
..GAGGGAUG......AAAC..GGGAA.G.CC.G.G.UGCGCGCUGGAAUCAGCCAGCGC
...........AAUGCCGG.CACUGCCC.CC.GCAACGGUAA..AU.GAG.........U
CAAUGAUCUGCACAC.............................GCCACUGUGCUGUAU.
.........................................................GGC
.ACGGGAAGGC...GCA..G.AA..UCAGGAAAAC.........................
..............................ACAGCUUCCGCUCAU.AAGUCCGGAGACCG
GCCUGAAGCAAUAUCAUGUUA
>Aromatoleum_aromatic.1 CR555306.1/2373817-2374002
AGUAUUUAACCGUAUCGAGGUG..CCCGC........................GCUCG..
..CGCGGGAG......AAUC..GGGAA.G.GC.G.G.UGC....................
...........GAUUCCGC.CACGUG.C.CC.AGCGCCGUGA..UG.AG..........G
AUCGUCCGGGCAGGCGUCA.........................GCCACUGGC..GAAA.
...........................................................G
.CCGGGAAGGC...GCC..C.GG..ACGAGUCGAG.........................
.........................................C.CU.CAGUCGGAAGACCG
GCCUCGAGACAUAUUGGCAGC
>Azoarcus.1 AM406670.1/3903431-3903207
AAGGUGCGGCGCGUUUCAGGUG..CCCGAAGGCGGUCC...............UCGCC..
..CCAGGGUU......AAAC..GGGAA.A.CA.G.G.UGCGCGCCUCCGGCGC.......
...........AAUGCCUG.UGCUGCCC.CC.GCAACGGUAA..GC.GAGU........G
CAAGGCGCAUCAACA.............................GCCACUGGG..UCGU.
.........................................................C.C
.CCGGGAAGGC...GAU..G.CG..UCGGAGCCGG.........................
.........................CCACAGCCGCUCCAGCCCGC.GAGCCCGGAUACCG
GCCCGAGCGCGAACUGGCGGA
>Azoarcus.2 AM406670.1/2635166-2635365
AAACUCCCCGGCGUUGAAGGU...UCCCCGC......................CAGG...
.....GGAUU......AAAA..GGGAA.G.CC.G.G.UGCCGAGCCCAGCUCG.......
...........AAUUCCGG.CGCUGCCC.CC.GCAACUGUCA..UC.GGC.........G
AGCGCUUCGCCACCCCAU..........................GCCACUGGA..UGCG.
.........................................................U.U
.CCGGGAAGGC..GGGC..G.AA..GCGCGACGAC.........................
.........................................CCGA.GAGCCAGGAGACCU
GCCCCAACGUCCAUCCUUGAA
>D.aromatica.1 CP000089.1/155783-155587
CCGGCCUUUAUGUCUCUCGGUG..CCCGGCCGAU...................UUAUC..
..GGCGGGAG......AAUC..GGGAA.G.GC.G.G.UGC....................
...........AAAUCCGC.CGCGUG.C.CC.AACGCUGUAA..GG.AG..........G
ACGGGCGAUGCGAAAA............................GCCACUGGUCAGGGAA
AACC.....................................................CGG
.CCGGGAAGGC...GCA..U.CG..GCCGGGUGA..........................
.........................................AUCC.GAGUCAGAAGACCG
GCCGGGAGACGAAACCGGGCU
>delta_proteobacteriu.1 AAQF01000040.1/17254-17069
UUGGGCGAUUGCCGACCUGGU...CGCGG...........................GC..
..CUGGGGAG......AAUA..GGAAA.U.CG.G.G.UGU....................
...........AAAUCCCG.AGCGGU.C.CC.GCCGCUGUGA..AC.GGG.........G
AGUGAUUCCGGUAAAU............................GCCACUGGCCGCCAGG
.........................................................CGG
.CCGGGAAGGC...CCG..G.AA..AAACGAUGAG.........................
.........................................CCGU.GAGCCAGAAGGCCU
GCCCCUUGGUUAGCCGCCGCC
>delta_proteobacteriu.2 AAQF01000153.1/10735-10925
CCAAGUUGGGCGAUUGCCGGC...CUGGUCG......................CGGGC..
..CCGGGGAG......AAUA..GGAAA.U.CG.G.G.UGU....................
...........AAAUCCCG.AGCGGU.C.CC.GCCGCUGUGA..AC.GGG.........G
AGUGAUUCCGGUAAAU............................GCCACUGGCCGCCAGG
.........................................................CGG
.CCGGGAAGGC...CCG..G.AA..AAGCGAUGAG.........................
.........................................CCGU.GAGCCAGAAGGCCU
GCCCCCUGGUUAGCCGCCGCA
>Desulfuromonas_aceto.1 AAEW02000019.1/41610-41805
GACGUCAUAUUGGAUCACGGU...GCCCAACGGGAGCUUAAAUG.........UCUCG..
..UGAGGCUU......GAUA..GGGAA.GAGG.G.G.UGC....................
...........AACUCCCC.CGCGGA.C.CC.GCCGCUGUAA..AC.G...........U
GGACAACAGGCUCCAU............................GCCACUGGU...UUC.
.........................................................G.A
.CCGGGAAGGC...GCC..U.GA..AGGAUGAAG..........................
..........................................CGU.AAGCCAGAAGACCU
GCCUGAUCCCAACACUCAAUG
>Desulfuromonas_aceto.2 AAEW02000025.1/17075-16893
UCUGCGCUGAAAGUUUCAGGU...GCUUGUU......................GCA....
.....AGCAC......AAUA..GGGAA.U.UC.C.G.UGA....................
...........AAUUCGGG.AGUGGG.C.CC.GCCGCUGUAA..CC.AG..........G
GACGAUCAACACAUUUG...........................GCCACUGACU..UAG.
..........................................................AG
.UCGGGAAGGC..GUGU..U.GA..GACGGAAGAU.........................
.........................................CUGG.AAGCCAGAAGACCU
GCCUGAAACGCAAUGGUUGCA
>Geobacter_uraniiredu.1 CP000698.1/4850452-4850264
UAAAUAGUUAUUCGAUCUGGUG..CGCUCAC......................UAACA..
..AGAGCGUU......AAAA..GGGAA.G.GA.G.G.UGU....................
...........AAUUCCUC.CACUGU.C.CC.GCAACUGUGA..AC.GG..........U
GAUGAAAGCCGCUGAUGU..........................GCCACUGAAU....A.
.........................................................UAA
.UCGGGAAGGC..GCGG..C.AA..GUAAAGUGAC.........................
.........................................CCGU.AAGUCAGGAAACCU
GCCAGGCUGAUUGCUCAAUGG
>G.lovleyi.1 CP001090.1/13752-13558
CAAAAUAAAUCAAAUCACGGU...GCCCA........................UAGG...
.....GGCUU......GAUA..GGGAA.GAGG.G.G.UGCAUUUCCAUUUGGAAA.....
...........GAGUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........G
GACAAAGGGCAAUAAU............................GUCACUGAUC.AUUA.
..........................................................GA
.UUGGGAAGAC....GC..C.CG..GAGGAUGAA..........................
.........................................UCGC.AAGCCAGAAGACCU
GCCGAUGAUCUCAACACUCAA
>G.lovleyi.2 CP001090.1/1002-822
GCAGAAUAUACGAUCAACGGU...GCCCA........................UACG...
.....GGCUU......GAUA..GGGAA.GUGA.G.G.UGA....................
...........AACUCCUC.CACGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACAAAGGGCAACAAU............................GUCACUGAUCAAUUU.
..........................................................GA
.UCGGGAAGAC....GC..C.CG..GAGGAUGAU..........................
.........................................UCGC.AAGUCAGAAGACCU
GCCUUGAUCUUACAUCAUGAA
>Geobacter_uraniiredu.2 CP000698.1/931897-931705
AACUGAAUAUCGGAUCACGGU...GCCCG........................CAAG...
.....GGCUU......GAUA..GGGAA.GAGG.G.G.UGCCGCUCAAACCGAGC......
...........CAUUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........G
GACGA.AGGGCAUUAU............................GUCACUGGUC.GAAA.
..........................................................GA
.CCGGGAAGGC...GCC..C.....GGAGGAUGAA.........................
.........................................UCGC.GAGCCAGAAGACCU
GCCAUGAUCUUAGCACUCAAC
>G.lovleyi.3 CP001090.1/30663-30471
UGAAUAUGCACGAAUCACGGUG..CCCGC...............................
...AAGGGUG......AAAA..GGGAA.GAGG.G.G.UGACGCUCUGACGAGC.......
...........UAUUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACGA.AGGGCAACAAC...........................GUCACUGAUCAUUUA.
..........................................................GA
.UUGGGAAGAC...GCC..C.....GGAGGAUGAC.........................
.........................................UCGC.AAGUCAGAAGACCU
GCCGCUGAUUGUUGUUACUCG
>Pelobacter_propionic.1 CP000482.1/1280913-1280737
ACACUCAUACCGGAUCAGGGC...GCCCG........................ACAG...
.....GGCUU......GAUA..GGGAA.GAGG.G.G.UGC....................
...........GACUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACAA.GGGGCAACG.............................GCCACUGGU..UUUU.
.........................................................G.A
.CUGGGAAGGC...GCC..C.....GGAGGAUGAA.........................
.........................................UCGC.GAGCCAGAAGACCU
GCCACUGAUCCACGCCACUCA
>Pelobacter_propionic.2 CP000482.1/1312853-1313047
AAUUGAAUAUCUGAUCAAGGU...GCCCG........................AGAG...
.....GGCUU......GAUA..GGGAA.GAGG.G.G.UGCCGCUCUCAGUAACGAGC...
...........CAUUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACGA.AGGGCAGUAU............................GCCACUGGU..GAAU.
.........................................................A.A
.CCGGGAAGGC...GCC..C.....GGAGGAUGAC.........................
.........................................UCGC.GAGCCAGAAGACCU
GCCUUUUGAUUAUUGCCACAG
>Pelobacter_propionic.3 CP000482.1/1300492-1300303
AGUUGAAUACCGGAUCAAGGC...GCCCG........................AGAG...
.....GGCUU......GAUA..GGGAA.GAGG.G.G.UGAGCUCCGAAGAGC........
...........GAUUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACAA.AGGGCAACA.............................GCCACUGGUU.UUUU.
..........................................................GA
.CUGGGAAGGC...GCC..C.....GGAGGAUGAC.........................
.........................................UCGC.AAGCCAGAAGACCU
GCCUGAUCUCUGCACUCAAUA
>Pelobacter_propionic.4 CP000482.1/1298216-1298027
AGUUUCAUACCGGAUCACGGU...GCCCG........................CAAG...
.....GGCUU......GAUA..GGGAA.GAUG.G.G.UGAGCUCCAAAGAGC........
...........GAUUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACGA.AGGGCACACC............................GCCACUGGU..UUUU.
.........................................................G.A
.CUGGGAAGGC...GCC..C.....GGAGAAUGAC.........................
.........................................UCGC.GAGCCAGAAAACCU
GCCUGAUCCCAAACACUCGGA
>Pelobacter_propionic.5 CP000482.1/1351280-1351088
AGCAUCAUAUCGGAUCACGGU...GCCCG........................CAAG...
.....GGCUU......GAUA..GGGAA.GAGG.G.G.UGCAACUCUUAUACGAGC.....
...........CAUUCCCC.CGCGGA.C.CC.GCCGCUGUAA..GC.GA..........U
GACGA.AGGGCAGUAU............................GCCACUGGU..GAAC.
.........................................................A.A
.CCGGGAAGGC...GCC..C.....GGAGGAUGAC.........................
.........................................UCGC.AAGCCAGAAGACCU
GCCUGAUCUUUACCACUGACU
>Stigmatella_aurantia.1 AAMD01000084.1/10237-10455
UAUCCCCGGCCUGUCCUCGGCG..CGUCCAU......................GAAGUCA
..UGGACGCU......CA.A..GGGAA.C.CC.G.G.UGU....................
...........GAUUCCGG.GACUGC.C.CC.GCAGCGGUGA..AC.AGGA........A
CGACCGCCGUCCACGCA...........................AGCACUGGCCCCUCCC
G........................................................GGG
.CUGGGAAGC....GAC..A.GC..CAGUAGAAGG.........................
.................AGGAUUCCCCCGAACCCUCCGCGCCUGU.GAGUCCGAAGACCU
GCCGAGGUCCCGUGCCCCGCA
>Stigmatella_aurantia.2 AAMD01000003.1/111144-110935
AUGAGAUGUGCUUCGGCACGU...UCUUGAU......................GACGC..
..AGUAGUCUU.....AAAA..GGGAA.C.CC.G.G.UGU....................
...........GAAUCCGG.GGCUGC.C.CC.GCAGCGGUAA..GC.GAGA........A
CGACCUCCACGACGA..............................GCACUGGUCCCUUCC
G........................................................GGA
.CUGGGAAGC....GGU..G.GA..CAGUAGGAAC.........................
......................CCGGCGCAAGCCGGAGUGCUCGU.GAGCCCGAAGACCU
GCCCGCACCUGACGUUGGAGA
>Stigmatella_aurantia.3 AAMD01000003.1/140975-140765
UAUAGACGCGCCUGUGCUGGU...GUCUGGGCU....................CACGC..
..CUGGACUU......AAAA..GGGAA.C.CC.G.G.UGU....................
...........GAUUCCGG.GACUGC.C.CC.GCAGCGGUAA..GU.GAGA........A
CGAAUCUCGCCAUUG..............................GCACUGGCUCCUCGG
.........................................................GGG
.CUGGGAAGC....GGC..G.AG..CCGUAGGAAU.........................
.....................CCGGCCCUGGGCCGGAGCGCUCAC.GAGUCCGAAGACCU
GCCCGCAUCCACCCGUGGGGA
>Myxococcus_xanthus_D.1 CP000113.1/8100727-8100515
AUCCCCGCUCGCGUCCUCGGUG..UCGCCGU......................GGAGCCA
..CGGUGACU......CA.A..GGGAA.C.CC.G.G.UGU....................
...........GAAUCCGG.GACUGC.C.CC.GCAGCGGUGA..GC.AGGA........A
CGAACGCCGUCACGUGA...........................AGCACUGGCCCGAAGC
.........................................................GGG
.CUGGGAAGC....GAC..G.GC..AAGUAGGUGG.........................
......................GUGCUCCGUGCACCCGCGCCUGC.GAGUCCGAAAACCU
GCCGAAGACCCGUGCCCUUGG
>Plesiocystis_pacific.1 ABCS01000025.1/79736-79534
UAUGAGCGGAGGGCCGAUGGUC..CCGCG........................CGUG...
.....CGGGC......CCGA..GGGAA.U.CC.G.G.UGG....................
...........AAAUCCGG.AGCUGC.C.CC.GCAGCGGUGA..GC.GGG.........A
ACGAAAGCUGCAUCGAA...........................GGCACUAGGC..CAC.
..........................................................GC
.CCGGGAAGCC...GCA..G.CG..AGUAGGUCAC.........................
.....................CGGGGUCUCGACCCCGUCGCCCGC.GAGUCCGAAGACCU
GCCGUCGGUGUUGUCCGUCAC
>Plesiocystis_pacific.2 ABCS01000001.1/110390-110179
AUAUGUUGUGCCCGCGAAGGU...GCUCGAC......................CCCGG..
..UCGGGCCC......GAGA..GGGAA.U.CC.G.G.UGA....................
...........GAAUCCGG.AGCUGC.C.CC.GCAGCGGUAA..GC.GAG.........A
ACGACCGCCACAUCAGA...........................GGCACUGGGACGCCC.
.........................................................GUC
.CUGGGAAGCC...GUG..G.CC..AGUAGGUUGG.........................
....................ACCGACGUCGAGGUCCAGCGCUCGC.AAGUCCGAAUACCU
GCCUUCGCCCGGCGCCGGGAG
>Enterobacter.1 CP000653.1/4368932-4368756
UUGUAGCAUUCUGUUUCCGGU...CUCAU...............................
...GUAAGUG......AAAA..GGGAA.U.CC.A.G.UGC....................
...........AAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..AG.AC..........U
GGCGGGAUGAGAGUUGUA..........................GACACUGU...GAAA.
............................................................
.AUGGGAAGUC...UUC..A.UC..CGUAAAACGC.........................
.........................................CACU.AAGCCCGAAGACCU
GCCGGAAUUACGUCGCAUCUG
>E.coli.1 AJ278144.1/22351-22163
CAGUAAUAUCCAGUUGUCGGU...CCUGC...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGC....................
...........AAAUCCGA.AACUGA.C.AC.GCAGCGGUAA..GG.AA..........A
GGUGCGAUGAUUGCGUAAUGUG......................GACACGGUC..AUCC.
...........................................................G
.GUGGGUGGUC...AUC..U.CU..UUGUAUCUUC.........................
.................................AGAUGCCCUUCU.AGGUCUGAAGACCU
GUCGGUUAACGUCGCAUCUGG
>E.coli.2 M10112.1/56-247
CUGUAGCAUCCACUUGCCGGU...CCUGU...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGC....................
...........GAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..GG.AA..........A
GGUGCGAUGAUUGCGUUAUGCG......................GACACU..CGCCAUU.
..........................................................CG
.GUGGGAAGUC...AUC..A.UC..UCUUAGUAUC.........................
...............................UUAGAUACCCCUCC.AAGCCCGAAGACCU
GCCGGCCAACGUCGCAUCUGG
>Klebsiella_pneumonia.1 CP000647.1/3513278-3513100
CGGCGAAACAAACCGACAGGUU..CGACACC......................AGU....
.....UUGGU......GUCA..GGGAA.G.GG.G.G.UGU....................
...........AAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.C...........U
GACGACCCCGCAAAAA.............................CCACUGAUC.GAAA.
..........................................................GA
.UUGGGAAGG....GCG..G.GC..GAGAACGAG..........................
..........................................GCU.AAGCCAGAAGACCU
GCCUGCCGGUAACUGACCAAC
>Klebsiella_pneumonia.2 CP000647.1/4660061-4660248
UUGUAGCAUUCGCCUACCGGU...CCUGU...............................
.....GAGUU......AAAA..GGGAA.C.CC.A.G.UGG....................
...........AAAUCUGG.GGCUGA.C.GC.GCAGCGGUAA..GG.AA...........
GGUGAGAAAUGAGCGCACUCGGUGCA..................GACACUGCGG..CUA.
.........................................................GCC
.GUGGGAAGUC.AUUAU..U.UC..UUGAAACAGC.........................
.........................................CUCC.AAGCCCGAAGACCU
GCCGGAAUACGUCGCACUGGG
>Photorhabdus_lumines.1 BX571869.1/30799-30632
UUAAUACCACACCUUAAUGGU.......................................
........GU......GGUU..GGGAA.G.GA.G.G.UGA....................
...........AAGUCCUC.CGCAGCCC.CC.GCUGCUGUGA..UG.CU..........G
ACAACUCCGCUGAU..............................GCCACUGGUCGGAAA.
..........................................................GA
.CUGGGAAGGU...UGC..G.GG..GAAGGGUGA..........................
.........................................CGCU.AAGCCAGAAGACCG
ACCUGACAGGCACGAGACAUU
>Salmonella_enterica_.1 CP000880.1/3464662-3464469
CGGUAGCAUCCGUGGGCCGGU...CCUGU...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGA....................
...........AAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..GG.AA..........A
GGUGAGAUGAGAGCGUAAGCA.......................GACACUGCC...UCC.
...........................................................G
.GCGGGAAGUC...AUC..A.UU..UCUGCUAUCC.........................
..........................AGCCAACGGAUAACCCUCC.AAGCCCGAAGACCU
GCCGGCUAACGUCGCAUCUGG
>S.enterica.1 AL627279.1/139350-139157
CGGUAGCAUCCGUGGGCCGGU...CCUGU...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGA....................
...........AAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..GG.AA..........A
GGUGAGAUGAGAGCGUAAGCA.......................GACACUGCC...UCC.
...........................................................G
.GCGGGAAGUC...AUC..A.UU..UCUGCUAUCC.........................
..........................AGUCAACGGAUAACCCUCC.AAGCCCGAAGACCU
GCCGGCUAACGUCGCAUCUGG
>S.enterica.2 M57569.1/218-26
CGGUAGCAUCCGUGGGCCGGU...CCUGU...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGA....................
...........AAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..GG.AA..........A
GGUGAGAUGAGAGCGUAAGCA.......................GACACCUGUC......
.........................................................CGG
.C.GGGAAGUC...AUC..A.UU..UCUGCUAUCC.........................
..........................AGCCAACGGAUAACCCUCC.AAGCCCGAAGACCU
GCCGGCUAACGUCGCAUCUGG
>S.enterica.3 L12006.1/1016-1191
CCAUAACGUAAACCAACAGGUUU.GCCACAU......................UUGU...
.....GGU...........A..GGGAA.G.GG.G.G.UGA....................
...........AAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.C...........U
GACGACCCCGUAAAGA.............................CCACUGAUC.GCAA.
..........................................................GA
.UUGGGAAGG....ACG..G.GC..GAGGAGGAC..........................
..........................................GCU.AAGCCAGAAGACCU
GCCUGUCGGUGAUAACCAACA
>S.enterica.4 M89481.1/311-504
CGGUAGCAUCCGUGGGCCGGU...CCUGU...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGA....................
...........AAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..GG.AA..........A
GGUGAGAUGAGAGCGUAAGCA.......................GAAACUGCC...UCC.
...........................................................G
.GCGGGAAGUC...AUC..A.UU..UCUGCUAUCC.........................
..........................AGCCAACGGAUAACCCUCC.AAGCCCGAAGACCU
GCCGGCUAACGUCGCAUCUGG
>Shigella_sonnei_Ss04.1 CP000038.1/2154731-2154556
UCAUAACAUACGCUGACAGGUGU.GGCACAU......................UUGU...
.....GCC...........U..GGGAA.G.AG.G.G.UGA....................
...........AAAUCCCU.CGCAGCCC.CC.GCUGCUGUAA..UG.C............
UGACAAACCCGAAAAU............................GCCACUGAUC.GCGA.
..........................................................GA
.UUGGGAAGGU...CGG..G.UG..AGGAUGAC...........................
..........................................GCU.AAGCCAGAAGACCA
GUCUGUCAGUCAAUACCAACA
>Shigella_boydii_Sb22.1 CP000036.1/1206778-1206953
UCAUAACAUACGCUGACAGGUGU.GGCACAU......................UUGU...
.....GCC...........U..GGGAA.G.AG.A.G.UGA....................
...........AAAUCCCU.CGCAGCCC.CC.GCUGCUGUAA..UG.C............
UGACAAACCCGAAAAU............................GCCACUGAUC.GCGA.
..........................................................GA
.UUGGGAAGGU...CGG..G.....AGAGGAUGAC.........................
..........................................GCU.AAGCCAGAAGACCA
GCCAGUCAGUCAAUACCAACA
>Shigella_boydii_CDC_.1 CP001063.1/4163721-4163911
CUGUAGCAUCCACUUGCCGGU...CCUGU...............................
.....GAGUU......AAUA..GGGAA.U.CC.A.G.UGC....................
...........GAAUCUGG.AGCUGA.C.GC.GCAGCGGUAA..GG.AA..........A
GGUGCGAUGAUUGCGUUAUGCG......................GACACUGCC..AUCC.
...........................................................G
.GUGGGAAGUC...AUC..A.UC..UCUUAGUAUC.........................
...............................UUAGAUACCCCUCC.AAGCCCGAAGACCU
GCCGGCCAACGUCUCAUCAUC
>Yersinia_bercovieri_.1 AALC02000021.1/24189-24004
UUUUUUAUAUAUCGAAAUGGUC..AUGUUAU......................GCGCAA.
..AAGCAU........AACU..GGGAA.G.GG.G.G.UGA....................
...........CAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.CU..........G
ACGAACCCGCUGUU..............................ACCACUGAUCCAUCG.
..........................................................GA
.UUGGGAAGGU...UGC..G.GG..UGAGAGUGA..........................
.........................................CGCU.AAGCCAGAAGACCA
GCCAGAUCGGUAAAAGAUAUU
>Yersinia_enterocolit.1 AM286415.1/2962117-2961936
UACUUAAAUACUGAAACAGGUA..UGUCGUG......................GAUA...
.....ACACG......AU.U..GGGAA.G.GG.G.G.UGU....................
...........AAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.CU..........G
ACGAACCCGCUGAG..............................ACCACUGAUCCAUAG.
..........................................................GA
.UUGGGAAGGU...AGC..G.GG..GGAGAGUGA..........................
.........................................CGCU.AAGCCAGAAGACCA
GCCAAAUCAGUAAAGAGUUUC
>Yersinia_mollaretii_.1 AALD02000002.1/89872-89688
AUUUGUAGUUACUGAUAGGGUC..AUGUUAU......................GCGCUA.
..AAGCAU........AACU..GGGAA.G.GG.G.G.UGA....................
...........CAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.C...........U
GACGAACCCGCUGUU.............................ACCACUGAUCCAUCG.
..........................................................GA
.UUGGGAAGGU...GCG..G.GG..GAGAAUGAC..........................
..........................................GCU.AAGCCAGAAGACCA
GCCAGAUCGGUAAAAGAUAUU
>Yersinia_intermedia_.1 AALF02000008.1/20807-20994
UUACUGAAAUGGUUAUGUCGU...GUACGCAUUG...................GCACU..
..UAAUACAC......GACA..GGGAA.G.GG.G.G.UGA....................
...........CAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.C...........C
GACGAACCCGCUGAA.............................ACCACUGAUCCAUCG.
..........................................................GA
.UUGGGAAGGU...GCG..G.GG..GAGGAUGAC..........................
..........................................GCU.AAGCCAGAAGACCA
GCCAAAUCGGUAAAAUAUAUU
>Yersinia_frederiksen.1 AALE02000017.1/13768-13947
CUUCAAGAAUAAAAGGCAUGUU..AUGCACU......................AAAG...
.....CAU........AACU..GGGAA.G.GG.G.G.UGA....................
...........CAAUCCCC.CGCAGCCC.CC.GCUGCUGUGA..UG.C...........U
GACGAACCCGUAGAA.............................ACCACUGAUCCACAA.
..........................................................GA
.UUGGGAAGGU...GCG..G.GA..GAGGAUGAC..........................
..........................................GCU.AAGCCAGAAGACCA
GCCCGCUCAGUAAAAGAUUUU
>Acinetobacter_bauman.1 CP000521.1/3325202-3325408
UGCGUUCAAAUGGAAGCAAGU...GUAAGCA......................AUUGA..
..UGCUUU...........A..GGGAA.G.CU.G.G.UGA....................
...........AAGUCCGG.CACUGCCC.CC.GCAACGGUAA..CA.AUG.........U
AAAGCAUAUUUUUAAGUCGAAAUCGACUUAC.............ACCACUGCA...GUA.
.........................................................G.U
.GUGGGAAGGU...GAA..U.AU..GUCCAUAAAU.........................
...............................GAAUUAUGGCGCUG.AAGUCCGGAGACCU
ACUUGUUUCAUCUAUCUACCC
>A.calcoaceticus.1 M34485.1/360-150
UUUACACAAUUCGUAACAAGUU..AAAAGCA......................UUCG...
....CUUU...........A..GGGAA.A.CU.G.G.UGC....................
...........AAAUCCAG.UGCUGCCC.CC.GCAACGGUAA..AA.AU..........G
UAAACCAUAUUAAAAAAGUCAUUUAGACUUAC............GCCACUGCAUGCAUA.
.........................................................GAU
.GUGGGAAGGU..GAAU..A.UG..CUUGUCUCUU.........................
..............................UUUGAGAUGCCAUUU.GAGUCCGGAGACCU
GCUUGUUACAUCUAUCCACUC
>A.vinelandii.1 CP001157.1/3390006-3389785
CCUGCGCGCCUCGCUUCAGGUG..CCCCAA..............................
.....GGGUG......AAACA.GGGAA.G.CC.G.G.UGCGUGCCGCGACCAUUCGCGGC
GC.........AAGGCCGG.CGCUGCCC.CC.GCAACGGUAG..AC.GAG.........U
CGCGAAACCGCAAUA.............................GCCACUGUGUUGCUCG
.........................................................GAC
.ACGGGAAGGC...GCG..G.UU..UCGGAAGCCG.........................
.........................CCGCAUGGCGCUUCGCUCGU.GAGCCCGGAGACCG
GCCUGUGGCGAUCCAUGGCGG
>Pseudomonas_putida_K.1 AE015451.1/3857543-3857766
CCUUAUGCCUCGCGUUCAGGUG..CCCCU........................CAGG...
.....GGGUG......AAAC..GGGAA.A.CC.G.G.UGCGUCCCAGGCCCUUCAGCAGG
GCCGGAC....AAUGCCGG.UGCUGCCC.CC.GCAACGGUAA..GC.GA...........
.GUGAAGCGUCUGU..............................ACCACUGUGCCUCGUA
GUAC.....................................................GGC
.AUGGGAAGGU...GAC..G.CG..UUCCAGGAGC.........................
..............................CCAGCUCUUCCUCGC.AAGCCCGGAGACCG
GCCUGGCGUUCAUGAACACCC
>Pseudomonas_stutzeri.1 CP000304.1/1397689-1397909
AACCUCCGCGUCGCCUCAGGUG..CCCCCUGGCCUUG................UGCCA..
..GACGGGUG......AAACA.GGGAA.G.CC.G.G.UCCAUUCUCACGAA.........
...........GAUUCCGG.CGCUGCCC.CC.GCAACGGUAG..GC.GAG.........U
CGAGAAACCGCAACG.............................GCCACUGUGCAUGAC.
..........................................................GC
.AUGGGAAGGC...GCG..G.UU..UCGGGAUGCC.........................
............................GCAAGGCAUACGCUCGC.AAGCCCGGAGACCG
GCCUGUCGCAUUUCACUGACA
>Pseudomonas_entomoph.1 CT573326.1/1440491-1440711
CCUUCGCGGCGUGUUUCAGGUG..CCCUGUGAACCCAG...............GUUCG..
..GCAGGGUG......AAACU.GGGAA.G.CC.G.G.UGGGCGCCAGCAAGGUGC.....
...........GAUUCCGG.CGCUGCCC.CC.GCAACGGUAG..AU.GA..........G
UCGACGGCUGCGCAAG............................GCCACUGGAUUUCGU.
.........................................................GAU
.CCGGGAAGGC...GCACGG.CC..CGGGCAUGGC.........................
....................................CCCACUCAU.GAGCCCGGAGACCG
GCCUGUCACUGCCAACGGCAU
>Pseudomonas_putida_F.1 CP000712.1/3685877-3686075
UCUACCAUGCGGGCCGCCGGU...UUCCACC......................ACG....
.....GAACU......AACA..GGGAA.U.CC.C.A.GGCCUGCCAAUACGGGCC.....
...........AAAC..GG.AACUGCCC.CC.GCAACUGUAG..GU.GC..........C
GAGCCUGCUCCAUCGAU...........................GCCACUGGGCCUGCC.
..........................................................GC
.CCGGGAAGGC..CGGA..G.CC..GGGCCGUGAC.........................
.........................................GCAC.CAGUCAGGAGACCU
GCCGGCCUACAUUCACCAACC
>P.mendocina.1 CP000680.1/4136427-4136223
AGUAAGGUUGCCGCCGAUGGU...UCCGCCGCCUC..................UGGCG..
..CGCGGAUG......AAAA..GGGAA.C.AG.G.G.UGCGGCGCCGCGUCGCC......
...........AAUGCCCU.GGCUGCCC.CC.GCAACUGUAA..AC.GG..........C
GUACGACGCUCCCUAU............................GCCACUGGCC.GCCA.
..........................................................GG
.CCGGGAAGGC...GAG..C.GA..AGUGGCAAG..........................
.........................................CCGU.GAGCCAGGAGACCU
GCCAUCGGCAAACGGGCGUUU
>Pseudomonas_fluoresc.1 CP000076.1/2504928-2504724
AUAUGCCGCCCAGUUUCAGGUG..CCUCCUGCCGC..................CGUGC..
..AGGAGGUG......AAAC..GGGAA.A.CC.G.G.UGCGCCCCUUUUCGGGC......
...........AAGUCCGG.UGCUGCCC.CC.GCAACGGUAA..GC.GA...........
GUGCUGCAUUCAACAG............................GCCACUGUACCCAAG.
..........................................................GU
.AUGGGAAGGC...GAA..U.GC..CGCCAGAC...........................
.........................................UCGC.AAGCCCGGAGACCG
GCCUGUGACGUCUGUUUGGCA
>Pseudomonas_fluoresc.2 CP000076.1/4227691-4227479
GUAGCCUUGCGCUUUCGAGGUU..CUUCGGCC.....................ACGGG..
..UCGAAGCU......AAGAA.GGGAA.C.GC.G.G.U.C....................
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUGA..AG.GG..........U
UCGAUUGCUGCAAG..............................GCCACUGCAUGGGCGU
CGACGACG.................................................CCG
.GUGGGAAGGC...GCA..G.CA..AUCGCCGGUC.........................
...........................CGACGACUGGCAAGCCCU.CAGCCAGGAGACCU
GCCUCGAUCCCAGAUUCUCAC
>Pseudomonas_syringae.1 AE016853.1/3679925-3680123
UUUACCAUGCCGGCCGUCGGU...UUCCG........................AGAG...
.....GAACU......AACA..GGGAA.U.UC.G....CCAGCUUUGUUUCAAAGGCC..
...........AAAA.CGA.AACUGCCC.CC.GCAACUGUAG..GC.AU..........C
GAGCCUGCUCCAAGACU...........................GCCACUGGAU..UCA.
.........................................................GAU
.CCGGGAAGGC..CGGA..G.CA..UGGUGAUGAC.........................
.........................................AUGC.CAGUCAGGAGACCU
GCCGACCCGAUUCAACCAACU
>Pseudomonas_aerugino.1 AAQW01000001.1/3968828-3969033
CCCAUCCGGCCCGUUCCAGGUG..CCUCCUGCCGC..................CGCGC..
..AGGAGGUG......AAAC..GGGAA.G.CC.G.G.UGCGUCACUUCGGUGAU......
...........CAGUCCGG.CGCUGCCC.CC.GCAACGGUAA..GC.GA...........
GCGAAAUCCUCUUCAG............................GCCACUGUGC..UCC.
.........................................................GGC
.AUGGGAAGGC...GAG..G.AU..UUCACGACCC.........................
.........................................UCGC.AAGCCCGGAGACCG
GCCUGCAACGCCCUGUUGGCA
>Pseudomonas_syringae.2 AE016853.1/1878136-1878350
CCUUCGCGGCUUGUUUCAGGUG..CUCUGCAAUCCUC................GAUUG..
..GCAGGGUG......AAACA.GGGAA.G.CC.G.G.UGUGGAUCGACCGAUCC......
...........GAUCCCGG.CGCUGCCC.CC.GCAACGGUAA..AU.GAG.........U
CAAGGCUGUGCAUCGU............................GCCACUGUGU..UUC.
.........................................................GAC
.ACGGGAAGGC...GCG..C.AG..CCGGGGUAAC.........................
.....................................CCGCUCAU.GAGCCCGGAGACCG
GCCUGAACCACUCAAUGGCAU
>Pseudomonas_aerugino.2 AAQW01000001.1/1951627-1951835
GCUGCGCGCCUUGCGACAGGUG..CCCCG........................CAAG...
.....GGGUG......AAACA.GGGAA.G.CU.G.G.UGCGUUCCGUCGGAAC.......
...........CAGGCCAG.CGCUGCCC.CC.GCAACGGUAG..GC.GAA.........U
CAGACAGCCGCUCGAUG...........................ACCACUGUGC..UCC.
.........................................................GGC
.AUGGGAAGGC...GCG..G.CU..GGAAGCGUCC.........................
...............................AGCGCUUCGCUCGC.GAGCCCGGAGACCG
GCCUGACGCACCCACGGCAUC
>Pseudomonas_fluoresc.3 CP000094.2/3552647-3552437
GUAGCCUUGCGCUUUCGAGGUU..CUUCGGC......................CCACG..
..CCGAAGCU......AAGAA.GGGAA.C.GC.G.G.UCC....................
............AAGCCGC.GGCUGCCC.CC.GCAACUGUGA..AC.GGU.........G
CUGUUCGCUGCCAC..............................GCCACUGCCAACUCAA
UCCAGAG..................................................CCA
.GCGGGAAGGC...GCA..G.CG..AAUACCGGGC.........................
............................CAAGGCCCGAACACCGU.CAGCCAGGAGACCU
GCCUCGUCACAGAUUCUCACU
>Pseudomonas_putida_K.2 AE015451.1/1866934-1867155
CCUUCGCGGCGUGUUUCAGGUG..CCCUGCCAGCCCCG...............ACUGG..
..GCAGGGUG......AAACU.GGGAA.G.CC.G.G.UGGGCGCCAGCAUGGCGC.....
...........GAUUCCGG.CGCUGCCC.CC.GCAACGGUGG..AU.GAGU........A
AAAGGCCGCGCAGG..............................GCCACUGGAUGCCAG.
.........................................................CAU
.CCGGGAAGGC...GCG..C.AG..GCCAGGGCCA.........................
.................................AGGCCCACUCAC.AAGCCCGGAGACCG
GCCUGAUACUGCCAACGGCAU
>P.mendocina.2 CP000680.1/5037130-5036935
UAGCCUUCUCGCUUUCGAGGUU..CUUCCCGGCAAG.................CCGCC..
..GGGGAGCU......AAGA..GGGAA.C.AG.G.G.U.C....................
...........GAUGCCCU.GGCUGCCC.CC.GCAACUGUAA..AC.GGU.........C
GCAACUCCUUCGAUAC............................ACCACUGCCU......
.........................................................CAA
.GCGGGAAGGU...GAA..G.GA..CGCACAGCGU.........................
....................................GCAGACCGU.GAGCCAGGAGACCU
GCCUCGAUAGACCAGCCACUU
>Pseudomonas_entomoph.2 CT573326.1/2524145-2524344
GUAGCCUUGCCGCUUCGAGGUU..CUCCGGC......................GUUGG..
..CCGGAGCU......AAGAC.GGGAA.C.GC.G.G.U.C....................
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUAG..GC.AC..........U
GGAACGGAUCGGCACA............................GCCACUGCGC....A.
.........................................................CGC
.GCGGGAAGGC..GCCA..U.CC..CGCUGGCAAU.........................
.............................GCUGCCGGCACAGUGC.GAGCCAGGAGACCU
GCCUCGUGACGUUUUCGACUU
>Pseudomonas_putida_W.1 CP000949.1/2158518-2158320
UCUACCAUGCGGGCCGCCGGU...UUCCACC......................ACG....
.....GAAAU......AAUA..GGGAA.U.CC.C.A.GGCCGCCCAGGCGCGCC......
...........AAAC..GG.AACUGCCC.CC.GCAACUGUAA..GU.GC..........C
GAGCCCGCUCCAUCGAU...........................GCCACUGGAUCAGCC.
.........................................................GAU
.CCGGGAAGGC..UGGA..G.CC..GGGUGAUGAC.........................
.........................................GCAC.CAGUCAGGAGACCU
GCCGGCUUACAUUCACCAACC
>P.mendocina.3 CP000680.1/1925111-1925322
CCUGCGCGCCUUGCUUCAGGUG..CCCCGCGUCGUCUCCAUCGA.........CGGCG..
..CCGGGGUG......AAACA.GGGAA.G.CC.G.G.UUC.........C..........
...........AAUGCCGG.CGCUGCCC.CC.GCAACGGUAG..GU.GA..........G
UCAAACGCUGUUUCAG............................GCCACUGUGC..AAU.
..........................................................GC
.ACGGGAAGGC...GCA..G.CG..UCGAACCUUU.........................
................................CAGGUUCGCUCAC.GAGCCCGGAGACCG
GCCUGUCGCAGUUCCACGGCA
>Pseudomonas_fluoresc.4 CP000076.1/5141454-5141221
CCUUCGCGACUUGUUUCAGGUG..CUCUGUGGCCCGU................GGCCG..
..ACAGAGUG......AAACA.GGGAA.G.CC.G.G.UCAGGGUCUGUUCCAGUGAUGGA
GCCGACGAC..GAUUCCGG.CGCUGCCC.CC.GCAACGGUAG..AU.GAG.........U
CAAGACUGCGCCUGAC............................GCCACUGUGUCAAUG.
..........................................................AC
.ACGGGAAGGC...GCG..C.AG..UCCGGCAGCC.........................
..................................AUGCCGCUCAU.GAGCCCGGAGACCG
GCCUGAUCCAUCCAACGGCAU
>Pseudomonas_aerugino.3 AAKV01000038.1/3066-2875
GUAGCCUUGCCGGUUCGAGGUU..CCUCGCC......................GGCGACG
..GCGGGGCU......AAGA..GGGAA.C.GC.G.G.U.C....................
...........GAUGCCGC.GGCUGCCC.CC.GCAACUGUGA..AC.GG..........C
GAUCGUUCCCCAAU..............................GCCACUGCGU......
.........................................................GAC
.GCGGGAAGGC...GGG..G.AA..CCGGCGGAGA.........................
..................................CGCCAGACCGU.GAGCCAGGAGACCU
GCCUCGUCGAUCCCGUGGCGC
>Pseudomonas_syringae.3 CP000058.1/2582044-2581830
CCUGUACGCCUUGUUUCGGGUG..CCCCU........................CACG...
.....GGGUG......AAAC..GGGAA.A.CC.G.G.UGCGCUCACGCUGUCGAGC....
...........AAGUCCGG.UGCUGCCC.CC.GCAACGGUAA..GC.GA...........
..GAGAAGGUCUUA..............................UCCACUGUGC..UAC.
.........................................................GGC
.AUGGGAAGGU...GAC..C.UU..GCAGGCCUUG.........................
....................AACGCGCGACGUUUGAGCCCCUCGC.GAGCCCGGAGACCG
GCCCGACAUCGUUGAAUGACA
>Pseudomonas_syringae.4 CP000058.1/3489261-3489461
UUUACCAUGCCGCCCGUCGGU...UUCCG........................AGAG...
.....GAACU......AACA..GGGAA.U.UC.G.....CACGCUUUGUCUGCACAAGGC
C..........AAAA.CGA.AACUGCCC.CC.GCAACUGUAG..GC.AU..........C
GAGCCUGCUCCAUGACU...........................GCCACUGGAU..UAA.
.........................................................GCU
.CCGGGAAGGC..CGGA..G.CC..UGGCGAUGAC.........................
.........................................AUGC.CAGUCAGGAGACCU
GCCGACCUGCUUCAACCCACU
>Pseudomonas_syringae.5 CP000075.1/4368222-4368008
CCUUCGCGGUUUGUUUCAGGUG..CUCUGCAAUCCUC................GAUUG..
..GCAGAGUG......AAACA.GGGAA.G.CC.G.G.UGUGGGUCGACAGAUCC......
...........GAUCCCGG.CGCUGCCC.CC.GCAACGGUAA..AU.GAG.........U
CAAGGCUGUGCCUGAC............................GCCACUGUGU..UUC.
.........................................................GAC
.AUGGGAAGGC...GCG..C.AG..CCGGGGUGAC.........................
.....................................CCGCUCAU.GAGCCCGGAGACCG
GCCUGAAUCACUCAAUGACAU
>Pseudomonas_syringae.6 CP000075.1/3709306-3709505
UUUACCAUGCCGCGCGUCGGU...UUCCG........................AGAG...
.....GAACU......AACA..GGGAA.U.UC.G...CACGCCUUUCUCACCAGGCG...
...........AAAAACGA.AACUGCCC.CC.GCAACUGUAG..GC.AC..........C
GAGCCUGCUCCAUGACU...........................GCCACUGGAU..CGU.
.........................................................GAU
.CCGGGAAGGC..CGGA..G.CC..UGGCGAUGAC.........................
.........................................GUGU.CAGUCAGGAGACCU
GCCGACCCGCUUCAACCCACU
>Reinekea_blandensis_.1 AAOE01000043.1/7099-6915
GUUGGCGAUGUCACUGACGGUU..UAAGACA......................AGCUG..
..UACUUGUC.........U..GGGAA.U.CC.G.G.UUA....................
...........AAUUCCGG.AGCUGCCC.CC.GCAACUGUAA..UG.GU..........C
AGGACGAUGUCUGUUU............................GCCACUGAAAAUUAU.
..........................................................UU
.UCGGGAAGGC...GAC..A.UC..GAGCCGUA...........................
.........................................GCCA.GAGCCAGGAGACCG
GCCGUCGUGCAUCUCGCAUCA
>Stenotrophomonas_mal.1 CP001111.1/542487-542264
AGACUGCGCGCACUUCCAGGUG..ACCUGCGGCCAU.................GGCCG..
..GCAGGUUG......AAAC..GGGAA.G.CC.G.G.UGACGCGUGAUUCCACGC.....
...........CAUGCCGG.CGCUGCCC.CC.GCAACGGUAA..GCACG..........U
CAGUUCCAGGCAACACC...........................GCCACUGUGCCGCAG.
..........................................................GC
.AUGGGAAGGC...GCC..U.GG..ACGGUGGCCU.........................
.............................CGCGCCACCCGGCGGC.AAGCCCGGAGACCG
GCCCGGAAGCCUCAGGUCGCG
>X.euvesicatoria.1 AM039952.1/3802147-3801923
UACCAUGCGCGCCCCUGAGGUG..ACUGCCG......................GUUGGCC
..GGUGGUUU......AAAC..GGGAA.U.CC.G.G.UGCGCGCGUCGCCUUGGGCCAGG
CGC........AAUUCCGG.AGCUGCCC.CC.GCAACGGUGG..GC.GAG.........G
CCAGGUGCCGCAACAU............................GCCACUGUGC.AGCC.
..........................................................GC
.AUGGGAAGGC...GCG..G.CA..UCGGAAGCAC.........................
...............................CAGCUUCCACUCGC.GAGCCCGGAGACCG
GCCUGAGGGAUUGACCCGGCA
>Xanthomonas_oryzae_p.1 AE013598.1/1368227-1368452
UACCAUGCGCGCCCCUGAGGUG..ACUGUCG......................GCUUGCC
..GGCGGUUU......AAAC..GGGAA.U.CC.G.G.UGCGCAGAUCGCCUUGGCGUGGU
GC.........AAUUCCGG.AGCUGCCC.CC.GCAACGGUGG..GC.GAG.........A
CAAGGGUCUGCAUGUAAC..........................ACCACUGUGC..GGU.
..........................................................GC
.ACGGGAAGGC...GCA..G.AU..CCGGGAAGCG.........................
..............................AUUGCUUCCGCUCGC.AAGCCCGGAGGCCG
GCCUGAAGGGAUUGACCCGGC
>Xanthomonas_campestr.1 AE008922.1/3631190-3630967
UACCAUGCGCGCCCCUGAGGUG..ACUGCCG......................GAAUUCC
..GGUGGUUU......AAAC..GGGAA.U.CC.G.G.UGCGCGCAUCGCCUUGGCGAGAC
GC.........AAGUCCGG.AGCUGCCC.CC.GCAACGGUGG..GC.GAG.........G
UCAGGUGCCGCAACAG............................GCCACUGUGC.ACAC.
..........................................................GC
.AUGGGAAGGC...GCG..G.UA..CCGGAAGCGC.........................
...............................AGGCUUCCACUCGC.GAGCCCGGAGACCG
GCCUGAGGGAUUGACCCGGCA
>Endoriftia_persephon.1 AASF01001990.1/2185-2411
UCCUGCGGCUCUGCUUCAGGUG..UCCCAAGGGUAUCCA..............CCCCC..
..AAGGGAUG......AAAC..GGGAA.G.CC.G.G.UACGUACUGGUGAAAAUCAGAAC
...........AAUUCCGG.CGCUGCCC.CC.GCAACGGUAG..GC.GAG.........U
UGCGGCGGAUCAUACA............................GCCACUGCGU..UUC.
.........................................................GAC
.GUGGGAAGGC...GAU..C.CG..CCAGGGUCUG.........................
................................CAAGACCACUCGC.AAGCCCGGAGACCG
GCCUGGAGCCCAAGGAACCUC
>Fervidobacterium_nod.1 CP000771.1/268818-268646
AUAAACCUCCCUUUGCAUGUUG......................................
.................AAA..GGGAA.GCCC.G.G.UGA....................
...........AAAUCCGG.CGCGGG.G.CC.GCCACCGUGA..GU.GGG.........G
ACGAAAUUCACAAUAU............................ACCACUGGCCUAAUUU
.........................................................UGG
.CUGGGAAGGU...GUG..A.AG.AGUAGGAUGAU.........................
.........................................CCAC.GAGUCGGGAGACCU
AACAUGCAAAGGAAGGGAGCC
>Fervidobacterium_nod.2 CP000771.1/1485865-1486047
AAUAUUCCAAACUGCGAAGGU...GCCGA...............................
...AAGGCUU......AAUA..GGGAA.CUCC.G.G.UGA....................
...........GAAUCCGG.GACGGU.C.GG.GCCACCGUGA..GU.GGG.........G
ACGAAAUGCUCAACUG............................GCCACUGGCUUUUUU.
..........................................................AG
.CUGGGAAGGC...GAG..C.AG..AGUAGGAUGA.........................
........................................GCCAC.AAGUCGGGAGACCU
GCCUUCGUAGGAUGGCAUUCC
>Thermosipho_melanesi.1 CP000716.1/891454-891623
AUAUAAAUUGUUACUAUAGGUU......................................
..................AA..GGGAA.CUCC.G.G.UGA....................
...........AAAUCCGG.GGCUGC.C.CA.GCAACCGUAA..CC.GGG.........G
ACGAAAUCCACAAAAU............................GUCACUGGGAAUUUU.
..........................................................UC
.CUGGGAAGGC...GUG..G.AG..AGUAGGUUGA.........................
........................................UCCGG.GAGCCGGGAGACCU
GCCUAUAGUAAGGUUAUUUCC
>Thermosipho_melanesi.2 CP000716.1/1854993-1855172
AAUAACCAAUGGAAUAAAGGU...GCCUU...............................
..AAAGGCUU......AAUA..GGGAA.G.CU.G.G.UGA....................
...........AAAUCCAG.CGCGGC.C.CC.GCCACCGUAA..CU.GGG.........G
ACGAAAGUCGCAAAGU............................GCCACUGGGA....U.
.........................................................UUC
.CUGGGAAGGU...GCG..A.CG..AGUAGGUUGA.........................
........................................UCCAG.AAGCCGGGAGACCU
GCCUUUGUUCCAAAGUGUUUC
>Thermosipho_melanesi.3 CP000716.1/734867-735049
AAAUAAUAAAACAUCUAGGGU...ACCAA...............................
...GCGGUUU......AAAA..GGGAA.CUCC.G.G.UGA....................
...........AAGUCCGG.GGCUGC.C.CA.GCAACCGUAA..CC.GGG.........G
ACGAAAUCCACAAAAU............................GCCACUGGGAAUUUU.
..........................................................UC
.CUGGGAAGGC...GUG..G.AG..AGUAGGUUGA.........................
........................................UCCGG.GAGCCGGGAGACCU
GCCUUAGAUGUAUGGACUCCA
>Thermotoga_petrophil.1 CP000702.1/858840-859024
AAGCCUCCCUCACCGUGCGGU...ACCCU........................UCGG...
.....GGUUC......AAAG..GGGAA.G.CC.G.G.UGG....................
...........AAAUCCGG.CGCGGG.G.CC.GCCACCGUGA..CC.GGG.........G
ACGAAACCCGCAGAAC............................GCCACUGGGGCGAUC.
.........................................................ACC
.CUGGGAAGGU...GCG..G.GG.AGUAGGAUGAU.........................
.........................................CCGG.AAGCCGGGAAACCC
GCCCGCGGUGAAGGGAAACCA