__author__ = "Magdalena A. Jonikas"
__version__ = "1.0"
__doc__ = """Example 1, part A. Use the C3' coarse grain template to generate working library of matches""" 

import sys, time
import simtk.c2a.c2a_findMatches as fm
import simtk.c2a.parseFD as pfd

from optparse import OptionParser
parser = OptionParser()
parser.add_option('-i', dest='filename',
                 action='store',
                 default='6TNA-FD.txt',
                 help='-FD filename')



if __name__=='__main__':
    t0 = time.time()
    (options, args) = parser.parse_args()
    pfd.testFD(options.filename)

    sys.stdout.write("Total run time: %.1f Sec\n" % (time.time()-t0))