# This file is part of MSMBuilder.
#
# Copyright 2011 Stanford University
#
# MSMBuilder is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

"""MSMBuilder: Markov State Models from Molecular Dynamics Simulations.

Authors:
Kyle A. Beauchamp
Gregory R. Bowman
Thomas J. Lane
Lutz Maibaum
Vijay Pande
Copyright 2011 Stanford University
"""

# list of all the modules (files) that are part of msmbuilder scripts
__all__ = [
"ArgLib",
"Assign",
"BuildMSM",
"CalculateClusterRadii",
"CalculateImpliedTimescales",
"CalculateRMSD",
"Cluster",
"ConvertDataToHDF",
"CreateAtomIndices",
"GetRandomConfs",
"PCCA",
"SavePDBs"
]