SHELL		= /bin/sh
prefix 		= @prefix@
exec_prefix 	= @exec_prefix@
top_srcdir 	= @top_srcdir@
srcdir		= @srcdir@
VPATH		= @srcdir@
bindir		= @bindir@
datadir		= @datadir@

CC		= @CC@ $(PROFILING)
CCLINKER	= @CC@ $(PROFILING)
CFLAGS 		= -O6 $(COPTIONS)
PROFILING	=
LDFLAGS		= @LDFLAGS@
LIBS		= -lm

@SET_MAKE@
INSTALL		= @INSTALL@
INSTALL_PROGRAM	= @INSTALL_PROGRAM@
INSTALL_DATA	= @INSTALL_DATA@


all: getPotentialBindingSites feature


TARGET = all

default : $(TARGET) 


getPotentialBindingSites:
	cd src; \
	make
	chmod +x feature/getPotentialBindingSites

make_feature:
	cd src; \
	cd feature-atomtype; \
	./configure --prefix=${prefix} --exec-prefix=${exec_prefix}; \
	make
	cp src/feature-atomtype/featurize feature
	cp src/feature-atomtype/buildmodel feature
	cp src/feature-atomtype/scoreit feature
	chmod +x feature/featurize
	chmod +x feature/buildmodel
	chmod +x feature/scoreit
	cp src/feature-atomtype/amberM2_params.dat feature
	cp src/feature-atomtype/residue_templates.dat feature


all:
	make getPotentialBindingSites
	make make_feature




clean:
	cd src; \
	rm -f *.o; \
	rm -f getPotentialBindingSites
	cd src/feature-atomtype; \
	make clean