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am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ am__include = @am__include@ am__leading_dot = @am__leading_dot@ am__quote = @am__quote@ am__tar = @am__tar@ am__untar = @am__untar@ bindir = @bindir@ build_alias = @build_alias@ datadir = @datadir@ exec_prefix = @exec_prefix@ host_alias = @host_alias@ includedir = @includedir@ infodir = @infodir@ install_sh = @install_sh@ libdir = @libdir@ libexecdir = @libexecdir@ localstatedir = @localstatedir@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ prefix = @prefix@ program_transform_name = @program_transform_name@ sbindir = @sbindir@ sharedstatedir = @sharedstatedir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ # this is where everything gets installed featuredir = $(prefix)/@PACKAGE@ featurehtmldir = $(featuredir)/html # compiler options CWARN = -Wall -pedantic AM_CXXFLAGS = $(CWARN) feature_SCRIPTS = convert_files.py protein_amber.py protein_residues.py # data files to be installed feature_DATA = amberM2_params.dat amberM_params.dat amber_params.dat \ residue_templates.dat featurehtml_DATA = README.html Feature-diagram.jpg ViewFeature-diagram2.jpg EXTRA_DIST = $(feature_DATA) $(featurehtml_DATA) $(feature_SCRIPTS) training_SOURCES = training.cc \ AssignAtomType.cc AssignAtomType.h CAllSitesFile.cc CAllSitesFile.h \ CAtomArray.cc CAtomArray.h CBayes.cc CBayes.h CBinaryFile.cc CBinaryFile.h \ CDouble.h CFile.cc CFile.h CGrid.cc CGrid.h CHashTable.cc CHashTable.h \ CObArray.cc CObArray.h CObject.h CParser.cc CParser.h CPropertiesArray.cc \ CPropertiesArray.h CProperty.cc CProperty.h CProtein.cc CProtein.h \ CProteinObject.cc CProteinObject.h CPtrArray.cc CPtrArray.h \ CScanningGrid.cc CScanningGrid.h CScoreBins.cc CScoreBins.h CScoreFile.cc \ CScoreFile.h CStatisticsFile.cc CStatisticsFile.h CString.cc CString.h \ File.cc File.h FileExt.h ForceFieldParameters.cc ForceFieldParameters.h \ MathConst.h Message.cc Message.h Neighbor.cc Neighbor.h Parse.cc Parse.h \ PropertyConstants.h PropertyList.cc PropertyList.h Random.cc Random.h \ RankSum.cc RankSum.h ResidueHelper.cc ResidueHelper.h ResidueTemplate.cc \ ResidueTemplate.h SAtom.cc SAtom.h SAtomProperties.cc SAtomProperties.h \ SBox.cc SBox.h SPoint3D.cc SPoint3D.h SPoint3DList.cc SPoint3DList.h \ SPropertyScoreData.h SPropertyStatData.cc SPropertyStatData.h \ SPropertyValues.cc SPropertyValues.h SSSBond.cc SSSBond.h SSite.cc \ SSite.h Utilities.cc Utilities.h const.cc const.h logutils.cc logutils.h \ stl_types.cc stl_types.h scan_SOURCES = scan.cc \ AssignAtomType.cc AssignAtomType.h CAllSitesFile.cc CAllSitesFile.h \ CAtomArray.cc CAtomArray.h CBayes.cc CBayes.h CBinaryFile.cc \ CBinaryFile.h CDouble.h CFile.cc CFile.h CGrid.cc CGrid.h CHashTable.cc \ CHashTable.h CObArray.cc CObArray.h CObject.h CParser.cc CParser.h \ CPropertiesArray.cc CPropertiesArray.h CProperty.cc CProperty.h \ CProtein.cc CProtein.h CProteinObject.cc CProteinObject.h CPtrArray.cc \ CPtrArray.h CScanningGrid.cc CScanningGrid.h CScanningGridCache.cc \ CScanningGridCache.h CScoreBins.cc CScoreBins.h CScoreFile.cc \ CScoreFile.h CStatisticsFile.cc CStatisticsFile.h CString.cc CString.h \ File.cc File.h FileExt.h ForceFieldParameters.cc ForceFieldParameters.h \ MathConst.h Message.cc Message.h Neighbor.cc Neighbor.h Parse.cc Parse.h \ PropertyConstants.h PropertyList.cc PropertyList.h Random.cc Random.h \ RankSum.cc RankSum.h ResidueHelper.cc ResidueHelper.h ResidueTemplate.cc \ ResidueTemplate.h SAtom.cc SAtom.h SAtomProperties.cc SAtomProperties.h \ SBox.cc SBox.h SPoint3D.cc SPoint3D.h SPoint3DList.cc SPoint3DList.h \ SPropertyScoreData.h SPropertyStatData.cc SPropertyStatData.h \ SPropertyValues.cc SPropertyValues.h SSSBond.cc SSSBond.h SSite.cc \ SSite.h Utilities.cc Utilities.h const.cc const.h logutils.cc logutils.h \ stl_types.cc stl_types.h evaluation_SOURCES = evalScore.cc \ CAllSitesFile.cc CAllSitesFile.h CDouble.h CFile.cc CFile.h \ CObArray.cc CObArray.h CObject.h CParser.cc CParser.h CProteinObject.cc \ CProteinObject.h CString.cc CString.h File.cc File.h FileExt.h Parse.cc \ Parse.h SPoint3D.cc SPoint3D.h Utilities.cc Utilities.h const.cc const.h \ logutils.cc logutils.h featurize_SOURCES = featurize.cc \ AssignAtomType.cc AssignAtomType.h CAtomArray.cc CAtomArray.h CBayes.cc \ CBayes.h CBinaryFile.cc CBinaryFile.h CFile.cc CFile.h CGrid.cc CGrid.h \ CHashTable.cc CHashTable.h CNeighborhood.h CObArray.cc CObArray.h \ CObject.h CParser.cc CParser.h CPropertiesArray.cc CPropertiesArray.h \ CProperty.cc CProperty.h CProtein.cc CProtein.h CProteinObject.cc \ CProteinObject.h CPtrArray.cc CPtrArray.h CScoreBins.cc CScoreBins.h \ CScoreFile.cc CScoreFile.h CStatisticsFile.cc CStatisticsFile.h \ CString.cc CString.h EnvironmentList.cc EnvironmentList.h File.cc \ File.h FileExt.h ForceFieldParameters.cc ForceFieldParameters.h \ MathConst.h Message.cc Message.h Neighbor.cc Neighbor.h Parse.cc \ Parse.h PointList.cc PointList.h PropertyConstants.h PropertyList.cc \ PropertyList.h Random.cc Random.h RankSum.cc RankSum.h ResidueHelper.cc \ ResidueHelper.h ResidueTemplate.cc ResidueTemplate.h SAtom.cc SAtom.h \ SAtomProperties.cc SAtomProperties.h SBox.cc SBox.h SPoint3D.cc SPoint3D.h \ SPoint3DList.cc SPoint3DList.h SPropertyScoreData.h SPropertyStatData.cc \ SPropertyStatData.h SPropertyValues.cc SPropertyValues.h SSSBond.cc \ SSSBond.h SSite.cc SSite.h Utilities.cc Utilities.h const.cc const.h \ hashstring.hpp logutils.cc logutils.h stl_types.cc stl_types.h scorefeatures_SOURCES = scorefeatures.cc \ AssignAtomType.cc AssignAtomType.h CAllSitesFile.cc CAllSitesFile.h \ CAtomArray.cc CAtomArray.h CBayes.cc CBayes.h CBinaryFile.cc \ CBinaryFile.h CDouble.h CFile.cc CFile.h CGrid.cc CGrid.h CHashTable.cc \ CHashTable.h CObArray.cc CObArray.h CObject.h CParser.cc CParser.h \ CPropertiesArray.cc CPropertiesArray.h CProperty.cc CProperty.h \ CProtein.cc CProtein.h CProteinObject.cc CProteinObject.h CPtrArray.cc \ CPtrArray.h CScanningGrid.cc CScanningGrid.h CScanningGridCache.cc \ CScanningGridCache.h CScoreBins.cc CScoreBins.h CScoreFile.cc CScoreFile.h \ CStatisticsFile.cc CStatisticsFile.h CString.cc CString.h File.cc \ File.h FileExt.h ForceFieldParameters.cc ForceFieldParameters.h \ MathConst.h Message.cc Message.h Neighbor.cc Neighbor.h Parse.cc \ Parse.h PointList.cc PointList.h PropertyConstants.h PropertyList.cc \ PropertyList.h Random.cc Random.h RankSum.cc RankSum.h ResidueHelper.cc \ ResidueHelper.h ResidueTemplate.cc ResidueTemplate.h SAtom.cc SAtom.h \ SAtomProperties.cc SAtomProperties.h SBox.cc SBox.h SPoint3D.cc SPoint3D.h \ SPoint3DList.cc SPoint3DList.h SPropertyScoreData.h SPropertyStatData.cc \ SPropertyStatData.h SPropertyValues.cc SPropertyValues.h SSSBond.cc \ SSSBond.h SSite.cc SSite.h Utilities.cc Utilities.h const.cc const.h \ logutils.cc logutils.h stl_types.cc stl_types.h scoreit_SOURCES = scoreit.cc \ CAtomArray.cc CAtomArray.h CBayes.cc CBayes.h CBinaryFile.cc CBinaryFile.h \ CFile.cc CFile.h CGrid.cc CGrid.h CHashTable.cc CHashTable.h CObArray.cc \ CObArray.h CObject.h CParser.cc CParser.h CPropertiesArray.cc \ CPropertiesArray.h CProperty.cc CProperty.h CProteinObject.cc \ CProteinObject.h CPtrArray.cc CPtrArray.h CScoreBins.cc CScoreBins.h \ CScoreFile.cc CScoreFile.h CStatisticsFile.cc CStatisticsFile.h CString.cc \ CString.h EnvironmentList.cc EnvironmentList.h File.cc File.h FileExt.h \ MathConst.h Message.cc Message.h Parse.cc Parse.h PropertyConstants.h \ PropertyList.cc PropertyList.h Random.cc Random.h RankSum.cc RankSum.h \ SAtom.cc SAtom.h SAtomProperties.cc SAtomProperties.h SBox.cc SBox.h \ SPoint3D.cc SPoint3D.h SPropertyScoreData.h SPropertyStatData.cc \ SPropertyStatData.h SPropertyValues.cc SPropertyValues.h Utilities.cc \ Utilities.h const.cc const.h logutils.cc logutils.h stl_types.cc \ stl_types.h buildmodel_SOURCES = buildmodel.cc \ CAtomArray.cc CAtomArray.h CBayes.cc CBayes.h CBinaryFile.cc CBinaryFile.h \ CFile.cc CFile.h CGrid.cc CGrid.h CHashTable.cc CHashTable.h CObArray.cc \ CObArray.h CObject.h CParser.cc CParser.h CPropertiesArray.cc \ CPropertiesArray.h CProperty.cc CProperty.h CProteinObject.cc \ CProteinObject.h CPtrArray.cc CPtrArray.h CScoreBins.cc CScoreBins.h \ CScoreFile.cc CScoreFile.h CStatisticsFile.cc CStatisticsFile.h CString.cc \ CString.h EnvironmentList.cc EnvironmentList.h File.cc File.h FileExt.h \ MathConst.h Message.cc Message.h Parse.cc Parse.h PropertyConstants.h \ PropertyList.cc PropertyList.h Random.cc Random.h RankSum.cc RankSum.h \ SAtom.cc SAtom.h SAtomProperties.cc SAtomProperties.h SBox.cc SBox.h \ SPoint3D.cc SPoint3D.h SPropertyScoreData.h SPropertyStatData.cc \ SPropertyStatData.h SPropertyValues.cc SPropertyValues.h Utilities.cc \ Utilities.h const.cc const.h logutils.cc logutils.h stl_types.cc \ stl_types.h findfile_SOURCES = findfile.cc \ Utilities.cc Utilities.h logutils.cc logutils.h featuretosvm_SOURCES = featuretosvm.cc testNeighbor_SOURCES = testNeighbor.cc \ CObject.h Neighbor.h Neighbor.cc SPoint3D.h SPoint3D.cc SPoint3DList.h \ SPoint3DList.cc stl_types.h stl_types.cc testResidueHelper_SOURCES = testResidueHelper.cc \ AssignAtomType.h AssignAtomType.cc CAtomArray.h CAtomArray.cc CFile.h \ CFile.cc CObArray.h CObArray.cc CObject.h CParser.h CParser.cc \ CProtein.h CProtein.cc CProteinObject.h CProteinObject.cc CString.h \ CString.cc File.h File.cc FileExt.h ForceFieldParameters.h \ ForceFieldParameters.cc MathConst.h Message.h Message.cc Neighbor.h \ Neighbor.cc Parse.h Parse.cc Random.h Random.cc ResidueHelper.h \ ResidueHelper.cc ResidueTemplate.h ResidueTemplate.cc SAtom.h SAtom.cc \ SBox.h SBox.cc SPoint3D.h SPoint3D.cc SPoint3DList.h SPoint3DList.cc \ SSSBond.h SSSBond.cc SSite.h SSite.cc Utilities.h Utilities.cc const.h \ const.cc stl_types.h stl_types.cc logutils.h logutils.cc testResidueTemplate_SOURCES = testResidueTemplate.cc \ ResidueTemplate.h ResidueTemplate.cc Utilities.h Utilities.cc \ stl_types.h stl_types.cc logutils.h logutils.cc testForceFieldParameters_SOURCES = testForceFieldParameters.cc \ ForceFieldParameters.h ForceFieldParameters.cc Utilities.h Utilities.cc \ stl_types.h stl_types.cc logutils.h logutils.cc testAssignAtomType_SOURCES = testAssignAtomType.cc \ AssignAtomType.h AssignAtomType.cc CAtomArray.h CAtomArray.cc CFile.h \ CFile.cc CObArray.h CObArray.cc CObject.h CParser.h CParser.cc \ CProtein.h CProtein.cc CProteinObject.h CProteinObject.cc CString.h \ CString.cc File.h File.cc FileExt.h ForceFieldParameters.h \ ForceFieldParameters.cc MathConst.h Message.h Message.cc Neighbor.h \ Neighbor.cc Parse.h Parse.cc Random.h Random.cc ResidueHelper.h \ ResidueHelper.cc ResidueTemplate.h ResidueTemplate.cc SAtom.h SAtom.cc \ SBox.h SBox.cc SPoint3D.h SPoint3D.cc SPoint3DList.h SPoint3DList.cc \ SSSBond.h SSSBond.cc SSite.h SSite.cc Utilities.h Utilities.cc const.h \ const.cc stl_types.h stl_types.cc logutils.h logutils.cc testSTLTypes_SOURCES = testSTLTypes.cc \ stl_types.h stl_types.cc all: config.h 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