; Derived from parsing of runfiles/alat.top.orig [ defaults ] ; nbfunc comb-rule gen-pairs fudgeLJ fudgeQQ 1 3 yes 0.5 0.5 ; comb-rule 3 is square-root sigma, the OPLSAA version [ atomtypes ] ; ala opls_ua CH4 16.042 0 A 3.73000e-01 1.230096 dum_ua CH4 16.042 0 A 0.0 0.0 [ bondtypes ] [ angletypes ] [ atomtypes ] opls_111 OW 15.99940 0.000 A 3.15061e-01 6.363864e-01 opls_112 HW 1.00800 0.000 A 0.00000e-01 0.000000e-01 [ moleculetype ] ; molname nrexcl SOL 1 [ atoms ] 1 opls_111 1 SOL OW 1 -0.834 2 opls_112 1 SOL HW1 1 0.417 3 opls_112 1 SOL HW2 1 0.417 [ settles ] ; i j funct length 1 1 0.09572 0.15139 ;[ constraints ] ; i j funct length ;1 2 1 0.09572 ;1 3 1 0.09572 ;2 3 1 0.15139 ; added by mrshirts 6/9/03 [ exclusions ] 1 2 3 2 1 3 3 1 2 [ moleculetype ] ; Name nrexcl United_atom_methane 3 [ atoms ] ; nr type resnr residue atom cgnr charge mass typeB chargeB massB 1 opls_ua 1 UAM CH4 1 0.0 16.042 dum_ua 0.000 16.042 [ bonds ] [ angles ] [ system ] ; Name United Atom Methane in water [ molecules ] ; Compound #mols United_atom_methane 1 SOL 893