grape - Revision 2: /trunk/doc/latex

• ..
• 1
• LeakTracer_Makefile.aux
• LeakTracer_Makefile.tex
• Makefile
• Makefile.aux
• Makefile.tex
• abbrev_h.tex
• abbrev_h_dep_incl.eps
• abitset_C.aux
• abitset_C.tex
• abitset_C_incl.eps
• abitset_h.aux
• abitset_h.tex
• abitset_h_dep_incl.eps
• abitset_h_incl.eps
• ajiobin_h.aux
• ajiobin_h.tex
• ajiobin_h_dep_incl.eps
• ajiobin_h_incl.eps
• amatrix_h.aux
• amatrix_h.tex
• amatrix_h_incl.eps
• amatrix_inc.aux
• amatrix_inc.tex
• amatrix_inc_dep_incl.eps
• annotated.tex
• atom_buildup_C.aux
• atom_buildup_C.tex
• atom_buildup_C_incl.eps
• atom_buildup_h.aux
• atom_buildup_h.tex
• atom_buildup_h_dep_incl.eps
• atom_buildup_h_incl.eps
• atom_constraint_C.aux
• atom_constraint_C.tex
• atom_constraint_C_incl.eps
• atom_constraint_h.aux
• atom_constraint_h.tex
• atom_constraint_h_dep_incl.eps
• atom_constraint_h_incl.eps
• atom_h.aux
• atom_h.tex
• atom_h_dep_incl.eps
• atom_h_incl.eps
• atom_registry_C.aux
• atom_registry_C.tex
• atom_registry_h.aux
• atom_registry_h.tex
• atom_registry_h_dep_incl.eps
• atom_registry_h_incl.eps
• bin_envelope_constraint_C.aux
• bin_envelope_constraint_C.tex
• bin_envelope_constraint_C_incl.eps
• bin_envelope_constraint_h.aux
• bin_envelope_constraint_h.tex
• bin_envelope_constraint_h_dep_incl.eps
• bin_envelope_constraint_h_incl.eps
• bits_h.aux
• bits_h.tex
• bits_h_dep_incl.eps
• bits_h_incl.eps
• class_ABitSet.tex
• class_ABitSet__Iterator.aux
• class_ABitSet__Iterator.tex
• class_ABitSet__Iterator_coll_graph.eps
• class_AMatrix.aux
• class_AMatrix.tex
• class_AMatrix__AMatrixRep.aux
• class_AMatrix__AMatrixRep.tex
• class_AMatrix__AMatrixRep_coll_graph.eps
• class_AMatrix__AMatrixRep_inherit_graph.eps
• class_AMatrix_coll_graph.eps
• class_AnimFrame.aux
• class_AnimFrame.tex
• class_AnimFrame_coll_graph.eps
• class_AnimFrame_inherit_graph.eps
• class_Atom.aux
• class_Atom.tex
• class_AtomBuildup.aux
• class_AtomBuildup.tex
• class_AtomBuildup_coll_graph.eps
• class_AtomBuildup_inherit_graph.eps
• class_AtomConstraint.aux
• class_AtomConstraint.tex
• class_AtomConstraint_coll_graph.eps
• class_AtomConstraint_inherit_graph.eps
• class_AtomRegistry.aux
• class_AtomRegistry.tex
• class_Atom_coll_graph.eps
• class_BinEnvelopeConstraint.aux
• class_BinEnvelopeConstraint.tex
• class_BinEnvelopeConstraint_coll_graph.eps
• class_BinEnvelopeConstraint_coll_graph.pdf
• class_BinEnvelopeConstraint_inherit_graph.eps
• class_ConstIterator.aux
• class_ConstIterator.tex
• class_ConstIterator_coll_graph.eps
• class_Constraint.aux
• class_Constraint.tex
• class_ConstraintManager.aux
• class_ConstraintManager.tex
• class_ConstraintManager_coll_graph.eps
• class_ConstraintRegistry.aux
• class_ConstraintRegistry.tex
• class_Constraint_coll_graph.eps
• class_Constraint_coll_graph.pdf
• class_Constraint_inherit_graph.eps
• class_CycleAll.aux
• class_CycleAll.tex
• class_CycleAll_coll_graph.eps
• class_CycleAll_inherit_graph.eps
• class_DLList.aux
• class_DLList.tex
• class_DLListNode.aux
• class_DLListNode.tex
• class_DLListNode_coll_graph.eps
• class_DLListRep.aux
• class_DLListRep.tex
• class_DLListRep_coll_graph.eps
• class_DLListRep_inherit_graph.eps
• class_DLList_coll_graph.eps
• class_DLList_inherit_graph.eps
• class_DSIterator.aux
• class_DSIterator.tex
• class_DSIterator_coll_graph.eps
• class_DistanceConstraint.aux
• class_DistanceConstraint.tex
• class_DistanceConstraint_coll_graph.eps
• class_DistanceConstraint_coll_graph.pdf
• class_DistanceConstraint_inherit_graph.eps
• class_DynString.aux
• class_DynString.tex
• class_DynString_coll_graph.eps
• class_Envelope.aux
• class_Envelope.tex
• class_EnvelopeConstraint.aux
• class_EnvelopeConstraint.tex
• class_EnvelopeConstraint_coll_graph.eps
• class_EnvelopeConstraint_coll_graph.pdf
• class_EnvelopeConstraint_inherit_graph.eps
• class_Envelope_coll_graph.eps
• class_Grid.aux
• class_Grid.tex
• class_Grid_coll_graph.eps
• class_Grid_coll_graph.pdf
• class_IdGen.aux
• class_IdGen.tex
• class_IdGen_coll_graph.eps
• class_IntPriorityQueue.aux
• class_IntPriorityQueue.tex
• class_IntVec.aux
• class_IntVec.tex
• class_Iterator.aux
• class_Iterator.tex
• class_Iterator_coll_graph.eps
• class_KAdjMat.aux
• class_KAdjMat.tex
• class_KAdjMat_coll_graph.eps
• class_Matrix.aux
• class_Matrix.tex
• class_Molecule.aux
• class_Molecule.tex
• class_Molecule_coll_graph.eps
• class_Molecule_coll_graph.pdf
• class_PositionConstraint.aux
• class_PositionConstraint.tex
• class_PositionConstraint_coll_graph.eps
• class_PositionConstraint_inherit_graph.eps
• class_Process.aux
• class_Process.tex
• class_Process_coll_graph.eps
• class_Process_inherit_graph.eps
• class_Queue.aux
• class_Queue.tex
• class_Queue_coll_graph.eps
• class_Queue_inherit_graph.eps
• class_RanBaseClass.aux
• class_RanBaseClass.tex
• class_RanBaseClass_inherit_graph.eps
• class_RanChar.aux
• class_RanChar.tex
• class_RanChar_coll_graph.eps
• class_RanChar_inherit_graph.eps
• class_RanDbl.aux
• class_RanDbl.tex
• class_RanDbl_coll_graph.eps
• class_RanDbl_inherit_graph.eps
• class_RanInt.aux
• class_RanInt.tex
• class_RanInt_coll_graph.eps
• class_RanInt_inherit_graph.eps
• class_RanLetter.aux
• class_RanLetter.tex
• class_RanLetter_coll_graph.eps
• class_RanLetter_inherit_graph.eps
• class_RanWord.aux
• class_RanWord.tex
• class_RanWord_coll_graph.eps
• class_RanWord_inherit_graph.eps
• class_RefRep.aux
• class_RefRep.tex
• class_RefRep_inherit_graph.eps
• class_RelaxSubset.aux
• class_RelaxSubset.tex
• class_RelaxSubset_coll_graph.eps
• class_RelaxSubset_inherit_graph.eps
• class_Residue.aux
• class_Residue.tex
• class_ResidueRegistry.aux
• class_ResidueRegistry.tex
• class_Residue_coll_graph.eps
• class_SatisfyMolecule.aux
• class_SatisfyMolecule.tex
• class_SatisfyMolecule_coll_graph.eps
• class_SatisfyMolecule_inherit_graph.eps
• class_Segment.aux
• class_Segment.tex
• class_Segments.aux
• class_Segments.tex
• class_Segments_coll_graph.eps
• class_Stack.aux
• class_Stack.tex
• class_Stack_coll_graph.eps
• class_Stack_inherit_graph.eps
• class_StopEval.aux
• class_StopEval.tex
• class_StopEval_coll_graph.eps
• class_StopEval_inherit_graph.eps
• class_UnitWeight.aux
• class_UnitWeight.tex
• class_base_iterator.aux
• class_base_iterator.tex
• class_base_iterator_coll_graph.eps
• class_base_iterator_inherit_graph.eps
• class_bf_iterator.aux
• class_bf_iterator.tex
• class_bf_iterator_coll_graph.eps
• class_bf_iterator_inherit_graph.eps
• class_ddEdge.aux
• class_ddEdge.tex
• class_ddEdge_coll_graph.eps
• class_ddGraph.aux
• class_ddGraph.tex
• class_ddGraph_coll_graph.eps
• class_ddVertex.aux
• class_ddVertex.tex
• class_df_iterator.aux
• class_df_iterator.tex
• class_df_iterator_coll_graph.eps
• class_df_iterator_inherit_graph.eps
• class_gwNumerics.aux
• class_gwNumerics.tex
• class_gwRelaxAtom.aux
• class_gwRelaxAtom.tex
• class_gwRelaxAtom_coll_graph.eps
• class_gwRelaxAtom_inherit_graph.eps
• class_jVector.aux
• class_jVector.tex
• class_jVector_coll_graph.eps
• class_jdErr_Eval.aux
• class_jdErr_Eval.tex
• class_jdErr_Eval_coll_graph.eps
• class_jdErr_Eval_inherit_graph.eps
• class_jdIterator.aux
• class_jdIterator.tex
• class_jdIterator_coll_graph.eps
• class_jdIterator_inherit_graph.eps
• class_jdOcc_Count.aux
• class_jdOcc_Count.tex
• class_jdOcc_Count_coll_graph.eps
• class_jdOcc_Count_inherit_graph.eps
• class_jdRand_Eval.aux
• class_jdRand_Eval.tex
• class_jdRand_Eval_coll_graph.eps
• class_jdRand_Eval_inherit_graph.eps
• class_neighbor_iterator.aux
• class_neighbor_iterator.tex
• class_neighbor_iterator_coll_graph.eps
• class_neighbor_iterator_inherit_graph.eps
• class_path_iterator.aux
• class_path_iterator.tex
• class_path_iterator_coll_graph.eps
• class_sdEdge.aux
• class_sdEdge.tex
• class_sdEdge_coll_graph.eps
• class_sdGraph.aux
• class_sdGraph.tex
• class_sdGraph_coll_graph.eps
• class_sdVertex.aux
• class_sdVertex.tex
• class_sdVertex_coll_graph.eps
• class_z.aux
• class_z.tex
• compoper_h.aux
• compoper_h.tex
• compoper_h_dep_incl.eps
• constraint_C.aux
• constraint_C.tex
• constraint_C_incl.eps
• constraint_h.aux
• constraint_h.tex
• constraint_h_dep_incl.eps
• constraint_h_incl.eps
• constraint_manager_C.aux
• constraint_manager_C.tex
• constraint_manager_C_incl.eps
• constraint_manager_h.aux
• constraint_manager_h.tex
• constraint_manager_h_dep_incl.eps
• constraint_manager_h_incl.eps
• constraint_registry_C.aux
• constraint_registry_C.tex
• constraint_registry_C_incl.eps
• constraint_registry_h.aux
• constraint_registry_h.tex
• constraint_registry_h_dep_incl.eps
• constraint_registry_h_incl.eps
• cycle_all_C.aux
• cycle_all_C.tex
• cycle_all_C_incl.eps
• cycle_all_h.aux
• cycle_all_h.tex
• cycle_all_h_dep_incl.eps
• cycle_all_h_incl.eps
• ddgraph_h.aux
• ddgraph_h.tex
• ddgraph_h_dep_incl.eps
• ddgraph_h_incl.eps
• ddgraph_inc.aux
• ddgraph_inc.tex
• ddgraph_inc_dep_incl.eps
• ddvertex_h.aux
• ddvertex_h.tex
• ddvertex_h_dep_incl.eps
• ddvertex_h_incl.eps
• ddvertex_inc.aux
• ddvertex_inc.tex
• ddvertex_inc_dep_incl.eps
• dens-trans_C.aux
• dens-trans_C.tex
• dens-trans_C_incl.eps
• dist_C.aux
• dist_C.tex
• dist_C_incl.eps
• distance_constraint_C.aux
• distance_constraint_C.tex
• distance_constraint_C_incl.eps
• distance_constraint_h.aux
• distance_constraint_h.tex
• distance_constraint_h_dep_incl.eps
• distance_constraint_h_incl.eps
• dllist_h.aux
• dllist_h.tex
• dllist_h_dep_incl.eps
• dllist_h_incl.eps
• dllist_inc.aux
• dllist_inc.tex
• dllist_inc_dep_incl.eps
• dlliter_inc.aux
• dlliter_inc.tex
• dlliter_inc_dep_incl.eps
• doxygen.sty
• dsiter_inc.aux
• dsiter_inc.tex
• dsiter_inc_dep_incl.eps
• dynstring_C.aux
• dynstring_C.tex
• dynstring_C_incl.eps
• dynstring_h.aux
• dynstring_h.tex
• dynstring_h_dep_incl.eps
• dynstring_h_incl.eps
• env_diff_C.aux
• env_diff_C.tex
• env_diff_C_incl.eps
• envelope_C.aux
• envelope_C.tex
• envelope_C_incl.eps
• envelope_constraint_C.aux
• envelope_constraint_C.tex
• envelope_constraint_C_incl.eps
• envelope_constraint_h.aux
• envelope_constraint_h.tex
• envelope_constraint_h_dep_incl.eps
• envelope_constraint_h_incl.eps
• envelope_h.aux
• envelope_h.tex
• envelope_h_dep_incl.eps
• envelope_h_incl.eps
• err_eval_C.aux
• err_eval_C.tex
• err_eval_C_incl.eps
• error_handler_h.aux
• error_handler_h.tex
• error_handler_h_dep_incl.eps
• error_handler_h_incl.eps
• files.tex
• globals_C.aux
• globals_C.tex
• globals_C_incl.eps
• globals_h.aux
• globals_h.tex
• globals_h_dep_incl.eps
• globals_h_incl.eps
• grape_C.aux
• grape_C.tex
• grape_C_incl.eps
• graph_weights_h.aux
• graph_weights_h.tex
• graph_weights_h_dep_incl.eps
• graph_weights_h_incl.eps
• grid_C.aux
• grid_C.tex
• grid_C_incl.eps
• grid_h.aux
• grid_h.tex
• grid_h_dep_incl.eps
• grid_h_incl.eps
• gw_numerics_C.aux
• gw_numerics_C.tex
• gw_numerics_C_incl.eps
• gw_numerics_h.aux
• gw_numerics_h.tex
• gw_numerics_h_dep_incl.eps
• gw_numerics_h_incl.eps
• gw_relax_atom_C.aux
• gw_relax_atom_C.tex
• gw_relax_atom_C_incl.eps
• gw_relax_atom_h.aux
• gw_relax_atom_h.tex
• gw_relax_atom_h_dep_incl.eps
• gw_relax_atom_h_incl.eps
• hierarchy.tex
• idgen_h.aux
• idgen_h.tex
• idgen_h_dep_incl.eps
• idgen_h_incl.eps
• intvec_C.aux
• intvec_C.tex
• intvec_C_incl.eps
• intvec_h.aux
• intvec_h.tex
• intvec_h_dep_incl.eps
• intvec_h_incl.eps
• intvec_inc.aux
• intvec_inc.tex
• intvec_inc_dep_incl.eps
• ipqueue_h.aux
• ipqueue_h.tex
• ipqueue_h_dep_incl.eps
• ipqueue_h_incl.eps
• ipqueue_inc.aux
• ipqueue_inc.tex
• ipqueue_inc_dep_incl.eps
• jd_anim_frame_C.aux
• jd_anim_frame_C.tex
• jd_anim_frame_C_incl.eps
• jd_anim_frame_h.aux
• jd_anim_frame_h.tex
• jd_anim_frame_h_dep_incl.eps
• jd_anim_frame_h_incl.eps
• jd_err_eval_C.aux
• jd_err_eval_C.tex
• jd_err_eval_C_incl.eps
• jd_err_eval_h.aux
• jd_err_eval_h.tex
• jd_err_eval_h_dep_incl.eps
• jd_err_eval_h_incl.eps
• jd_iterator_C.aux
• jd_iterator_C.tex
• jd_iterator_C_incl.eps
• jd_iterator_h.aux
• jd_iterator_h.tex
• jd_iterator_h_dep_incl.eps
• jd_iterator_h_incl.eps
• jd_occ_count_C.aux
• jd_occ_count_C.tex
• jd_occ_count_C_incl.eps
• jd_occ_count_h.aux
• jd_occ_count_h.tex
• jd_occ_count_h_dep_incl.eps
• jd_occ_count_h_incl.eps
• jd_rand_eval_C.aux
• jd_rand_eval_C.tex
• jd_rand_eval_C_incl.eps
• jd_rand_eval_h.aux
• jd_rand_eval_h.tex
• jd_rand_eval_h_dep_incl.eps
• jd_rand_eval_h_incl.eps
• jd_relax_subset_C.aux
• jd_relax_subset_C.tex
• jd_relax_subset_C_incl.eps
• jd_relax_subset_h.aux
• jd_relax_subset_h.tex
• jd_relax_subset_h_dep_incl.eps
• jd_relax_subset_h_incl.eps
• jd_stop_eval_C.aux
• jd_stop_eval_C.tex
• jd_stop_eval_C_incl.eps
• jd_stop_eval_h.aux
• jd_stop_eval_h.tex
• jd_stop_eval_h_dep_incl.eps
• jd_stop_eval_h_incl.eps
• jsmisc_h.aux
• jsmisc_h.tex
• jsmisc_h_dep_incl.eps
• jsmisc_h_incl.eps
• jvector_C.aux
• jvector_C.tex
• jvector_C_incl.eps
• jvector_h.aux
• jvector_h.tex
• jvector_h_dep_incl.eps
• jvector_h_incl.eps
• kadjmat_h.aux
• kadjmat_h.tex
• kadjmat_h_dep_incl.eps
• kadjmat_h_incl.eps
• lib_Makefile.aux
• lib_Makefile.tex
• matrix_C.aux
• matrix_C.tex
• matrix_C_incl.eps
• matrix_h.aux
• matrix_h.tex
• matrix_h_dep_incl.eps
• matrix_h_incl.eps
• molecule_C.aux
• molecule_C.tex
• molecule_C_incl.eps
• molecule_h.aux
• molecule_h.tex
• molecule_h_dep_incl.eps
• molecule_h_incl.eps
• molio_C.aux
• molio_C.tex
• molio_C_incl.eps
• ocount_C.aux
• ocount_C.tex
• ocount_C_incl.eps
• old/
• position_constraint_C.aux
• position_constraint_C.tex
• position_constraint_C_incl.eps
• position_constraint_h.aux
• position_constraint_h.tex
• position_constraint_h_dep_incl.eps
• position_constraint_h_incl.eps
• process_C.aux
• process_C.tex
• process_C_incl.eps
• process_h.aux
• process_h.tex
• process_h_dep_incl.eps
• process_h_incl.eps
• queue_h.aux
• queue_h.tex
• queue_h_dep_incl.eps
• queue_h_incl.eps
• rand_eval_C.aux
• rand_eval_C.tex
• rand_eval_C_incl.eps
• randomgenerator_C.aux
• randomgenerator_C.tex
• randomgenerator_C_incl.eps
• randomgenerator_h.aux
• randomgenerator_h.tex
• randomgenerator_h_dep_incl.eps
• randomgenerator_h_incl.eps
• refman.aux
• refman.dvi
• refman.idx
• refman.log
• refman.ps
• refman.tex
• refman.toc
• refrep_h.aux
• refrep_h.tex
• refrep_h_dep_incl.eps
• residue_C.aux
• residue_C.tex
• residue_C_incl.eps
• residue_h.aux
• residue_h.tex
• residue_h_dep_incl.eps
• residue_h_incl.eps
• residue_registry_h.aux
• residue_registry_h.tex
• residue_registry_h_dep_incl.eps
• residue_registry_h_incl.eps
• satisfy_molecule_h.aux
• satisfy_molecule_h.tex
• satisfy_molecule_h_dep_incl.eps
• satisfy_molecule_h_incl.eps
• sdgalg_inc.aux
• sdgalg_inc.tex
• sdgalg_inc_dep_incl.eps
• sdgalg_inc_incl.eps
• sdgiter_inc.aux
• sdgiter_inc.tex
• sdgiter_inc_dep_incl.eps
• sdgraph_h.aux
• sdgraph_h.tex
• sdgraph_h_dep_incl.eps
• sdgraph_h_incl.eps
• sdgraph_inc.aux
• sdgraph_inc.tex
• sdgraph_inc_dep_incl.eps
• sdvertex_h.aux
• sdvertex_h.tex
• sdvertex_h_dep_incl.eps
• sdvertex_h_incl.eps
• sdvertex_inc.aux
• sdvertex_inc.tex
• sdvertex_inc_dep_incl.eps
• search-sort_h.aux
• search-sort_h.tex
• search-sort_h_dep_incl.eps
• segments_inc.aux
• segments_inc.tex
• segments_inc_dep_incl.eps
• segments_inc_incl.eps
• src_Makefile.aux
• src_Makefile.tex
• src_aux_Makefile.aux
• src_aux_Makefile.tex
• stack_h.aux
• stack_h.tex
• stack_h_dep_incl.eps
• stack_h_incl.eps
• streamoper_h.aux
• streamoper_h.tex
• streamoper_h_dep_incl.eps
• top_process_h.aux
• top_process_h.tex
• top_process_h_dep_incl.eps
• utils_C.aux
• utils_C.tex
• utils_C_incl.eps
• utils_h.aux
• utils_h.tex
• utils_h_dep_incl.eps
• utils_h_incl.eps