\section{GRAPE:  Generalizable Replaceable Atomic Position Engine Compound List}
Here are the classes, structs, unions and interfaces with brief descriptions:\begin{CompactList}
\item\contentsline{section}{{\bf ABit\-Set} }{\pageref{class_ABitSet}}{}
\item\contentsline{section}{{\bf AMatrix} }{\pageref{class_AMatrix}}{}
\item\contentsline{section}{{\bf AMatrix::AMatrix\-Rep} }{\pageref{class_AMatrix__AMatrixRep}}{}
\item\contentsline{section}{{\bf Anim\-Frame} }{\pageref{class_AnimFrame}}{}
\item\contentsline{section}{{\bf Atom} }{\pageref{class_Atom}}{}
\item\contentsline{section}{{\bf Atom\-Buildup} }{\pageref{class_AtomBuildup}}{}
\item\contentsline{section}{{\bf Atom\-Constraint} }{\pageref{class_AtomConstraint}}{}
\item\contentsline{section}{{\bf Atom\-Registry} }{\pageref{class_AtomRegistry}}{}
\item\contentsline{section}{{\bf base\_\-iterator} }{\pageref{class_base_iterator}}{}
\item\contentsline{section}{{\bf bf\_\-iterator} }{\pageref{class_bf_iterator}}{}
\item\contentsline{section}{{\bf Bin\-Envelope\-Constraint} }{\pageref{class_BinEnvelopeConstraint}}{}
\item\contentsline{section}{{\bf Const\-Iterator} }{\pageref{class_ConstIterator}}{}
\item\contentsline{section}{{\bf Constraint} }{\pageref{class_Constraint}}{}
\item\contentsline{section}{{\bf Constraint\-Manager} }{\pageref{class_ConstraintManager}}{}
\item\contentsline{section}{{\bf Constraint\-Registry} }{\pageref{class_ConstraintRegistry}}{}
\item\contentsline{section}{{\bf Cycle\-All} }{\pageref{class_CycleAll}}{}
\item\contentsline{section}{{\bf dd\-Edge} }{\pageref{class_ddEdge}}{}
\item\contentsline{section}{{\bf dd\-Graph} }{\pageref{class_ddGraph}}{}
\item\contentsline{section}{{\bf dd\-Vertex} }{\pageref{class_ddVertex}}{}
\item\contentsline{section}{{\bf df\_\-iterator} }{\pageref{class_df_iterator}}{}
\item\contentsline{section}{{\bf Distance\-Constraint} }{\pageref{class_DistanceConstraint}}{}
\item\contentsline{section}{{\bf DLList} }{\pageref{class_DLList}}{}
\item\contentsline{section}{{\bf DLList\-Node} }{\pageref{class_DLListNode}}{}
\item\contentsline{section}{{\bf DLList\-Rep} }{\pageref{class_DLListRep}}{}
\item\contentsline{section}{{\bf DSIterator} }{\pageref{class_DSIterator}}{}
\item\contentsline{section}{{\bf Dyn\-String} }{\pageref{class_DynString}}{}
\item\contentsline{section}{{\bf Envelope} }{\pageref{class_Envelope}}{}
\item\contentsline{section}{{\bf Envelope\-Constraint} }{\pageref{class_EnvelopeConstraint}}{}
\item\contentsline{section}{{\bf Grid} }{\pageref{class_Grid}}{}
\item\contentsline{section}{{\bf gw\-Numerics} }{\pageref{class_gwNumerics}}{}
\item\contentsline{section}{{\bf gw\-Relax\-Atom} }{\pageref{class_gwRelaxAtom}}{}
\item\contentsline{section}{{\bf Id\-Gen} }{\pageref{class_IdGen}}{}
\item\contentsline{section}{{\bf Int\-Priority\-Queue} }{\pageref{class_IntPriorityQueue}}{}
\item\contentsline{section}{{\bf Int\-Vec} }{\pageref{class_IntVec}}{}
\item\contentsline{section}{{\bf Iterator} }{\pageref{class_Iterator}}{}
\item\contentsline{section}{{\bf ABit\-Set::Iterator} }{\pageref{class_ABitSet__Iterator}}{}
\item\contentsline{section}{{\bf jd\-Err\_\-Eval} }{\pageref{class_jdErr_Eval}}{}
\item\contentsline{section}{{\bf jd\-Iterator} }{\pageref{class_jdIterator}}{}
\item\contentsline{section}{{\bf jd\-Occ\_\-Count} }{\pageref{class_jdOcc_Count}}{}
\item\contentsline{section}{{\bf jd\-Rand\_\-Eval} }{\pageref{class_jdRand_Eval}}{}
\item\contentsline{section}{{\bf j\-Vector} }{\pageref{class_jVector}}{}
\item\contentsline{section}{{\bf KAdj\-Mat} }{\pageref{class_KAdjMat}}{}
\item\contentsline{section}{{\bf Matrix} }{\pageref{class_Matrix}}{}
\item\contentsline{section}{{\bf Molecule} }{\pageref{class_Molecule}}{}
\item\contentsline{section}{{\bf neighbor\_\-iterator} }{\pageref{class_neighbor_iterator}}{}
\item\contentsline{section}{{\bf path\_\-iterator} }{\pageref{class_path_iterator}}{}
\item\contentsline{section}{{\bf Position\-Constraint} }{\pageref{class_PositionConstraint}}{}
\item\contentsline{section}{{\bf Process} }{\pageref{class_Process}}{}
\item\contentsline{section}{{\bf Queue} }{\pageref{class_Queue}}{}
\item\contentsline{section}{{\bf Ran\-Base\-Class} }{\pageref{class_RanBaseClass}}{}
\item\contentsline{section}{{\bf Ran\-Char} }{\pageref{class_RanChar}}{}
\item\contentsline{section}{{\bf Ran\-Dbl} }{\pageref{class_RanDbl}}{}
\item\contentsline{section}{{\bf Ran\-Int} }{\pageref{class_RanInt}}{}
\item\contentsline{section}{{\bf Ran\-Letter} }{\pageref{class_RanLetter}}{}
\item\contentsline{section}{{\bf Ran\-Word} }{\pageref{class_RanWord}}{}
\item\contentsline{section}{{\bf Ref\-Rep} }{\pageref{class_RefRep}}{}
\item\contentsline{section}{{\bf Relax\-Subset} }{\pageref{class_RelaxSubset}}{}
\item\contentsline{section}{{\bf Residue} }{\pageref{class_Residue}}{}
\item\contentsline{section}{{\bf Residue\-Registry} }{\pageref{class_ResidueRegistry}}{}
\item\contentsline{section}{{\bf Satisfy\-Molecule} }{\pageref{class_SatisfyMolecule}}{}
\item\contentsline{section}{{\bf sd\-Edge} }{\pageref{class_sdEdge}}{}
\item\contentsline{section}{{\bf sd\-Graph} }{\pageref{class_sdGraph}}{}
\item\contentsline{section}{{\bf sd\-Vertex} }{\pageref{class_sdVertex}}{}
\item\contentsline{section}{{\bf Segment} }{\pageref{class_Segment}}{}
\item\contentsline{section}{{\bf Segments} }{\pageref{class_Segments}}{}
\item\contentsline{section}{{\bf Stack} }{\pageref{class_Stack}}{}
\item\contentsline{section}{{\bf Stop\-Eval} }{\pageref{class_StopEval}}{}
\item\contentsline{section}{{\bf Unit\-Weight} }{\pageref{class_UnitWeight}}{}
\item\contentsline{section}{{\bf z} }{\pageref{class_z}}{}
\end{CompactList}
