\section{GRAPE:  Generalizable Replaceable Atomic Position Engine Class Hierarchy}
This inheritance list is sorted roughly, but not completely, alphabetically:\begin{CompactList}
\item \contentsline{section}{ABit\-Set}{\pageref{class_ABitSet}}{}
\item \contentsline{section}{AMatrix}{\pageref{class_AMatrix}}{}
\item \contentsline{section}{Atom}{\pageref{class_Atom}}{}
\item \contentsline{section}{Atom\-Registry}{\pageref{class_AtomRegistry}}{}
\item \contentsline{section}{base\_\-iterator}{\pageref{class_base_iterator}}{}
\begin{CompactList}
\item \contentsline{section}{bf\_\-iterator}{\pageref{class_bf_iterator}}{}
\item \contentsline{section}{df\_\-iterator}{\pageref{class_df_iterator}}{}
\item \contentsline{section}{neighbor\_\-iterator}{\pageref{class_neighbor_iterator}}{}
\end{CompactList}
\item \contentsline{section}{Const\-Iterator}{\pageref{class_ConstIterator}}{}
\item \contentsline{section}{Constraint}{\pageref{class_Constraint}}{}
\begin{CompactList}
\item \contentsline{section}{Atom\-Constraint}{\pageref{class_AtomConstraint}}{}
\item \contentsline{section}{Bin\-Envelope\-Constraint}{\pageref{class_BinEnvelopeConstraint}}{}
\item \contentsline{section}{Distance\-Constraint}{\pageref{class_DistanceConstraint}}{}
\item \contentsline{section}{Envelope\-Constraint}{\pageref{class_EnvelopeConstraint}}{}
\item \contentsline{section}{Position\-Constraint}{\pageref{class_PositionConstraint}}{}
\end{CompactList}
\item \contentsline{section}{Constraint\-Manager}{\pageref{class_ConstraintManager}}{}
\item \contentsline{section}{Constraint\-Registry}{\pageref{class_ConstraintRegistry}}{}
\item \contentsline{section}{dd\-Edge}{\pageref{class_ddEdge}}{}
\item \contentsline{section}{dd\-Graph}{\pageref{class_ddGraph}}{}
\item \contentsline{section}{dd\-Vertex}{\pageref{class_ddVertex}}{}
\item \contentsline{section}{DLList}{\pageref{class_DLList}}{}
\begin{CompactList}
\item \contentsline{section}{Queue}{\pageref{class_Queue}}{}
\item \contentsline{section}{Stack}{\pageref{class_Stack}}{}
\end{CompactList}
\item \contentsline{section}{DLList\-Node}{\pageref{class_DLListNode}}{}
\item \contentsline{section}{DSIterator}{\pageref{class_DSIterator}}{}
\item \contentsline{section}{Dyn\-String}{\pageref{class_DynString}}{}
\item \contentsline{section}{Envelope}{\pageref{class_Envelope}}{}
\item \contentsline{section}{Grid}{\pageref{class_Grid}}{}
\item \contentsline{section}{gw\-Numerics}{\pageref{class_gwNumerics}}{}
\item \contentsline{section}{Id\-Gen}{\pageref{class_IdGen}}{}
\item \contentsline{section}{Int\-Priority\-Queue}{\pageref{class_IntPriorityQueue}}{}
\item \contentsline{section}{Int\-Vec}{\pageref{class_IntVec}}{}
\item \contentsline{section}{Iterator}{\pageref{class_Iterator}}{}
\item \contentsline{section}{ABit\-Set::Iterator}{\pageref{class_ABitSet__Iterator}}{}
\item \contentsline{section}{j\-Vector}{\pageref{class_jVector}}{}
\item \contentsline{section}{KAdj\-Mat}{\pageref{class_KAdjMat}}{}
\item \contentsline{section}{Matrix}{\pageref{class_Matrix}}{}
\item \contentsline{section}{Molecule}{\pageref{class_Molecule}}{}
\item \contentsline{section}{path\_\-iterator}{\pageref{class_path_iterator}}{}
\item \contentsline{section}{Process}{\pageref{class_Process}}{}
\begin{CompactList}
\item \contentsline{section}{Satisfy\-Molecule}{\pageref{class_SatisfyMolecule}}{}
\begin{CompactList}
\item \contentsline{section}{Anim\-Frame}{\pageref{class_AnimFrame}}{}
\item \contentsline{section}{Atom\-Buildup}{\pageref{class_AtomBuildup}}{}
\item \contentsline{section}{Cycle\-All}{\pageref{class_CycleAll}}{}
\item \contentsline{section}{gw\-Relax\-Atom}{\pageref{class_gwRelaxAtom}}{}
\item \contentsline{section}{jd\-Err\_\-Eval}{\pageref{class_jdErr_Eval}}{}
\item \contentsline{section}{jd\-Iterator}{\pageref{class_jdIterator}}{}
\item \contentsline{section}{jd\-Occ\_\-Count}{\pageref{class_jdOcc_Count}}{}
\item \contentsline{section}{jd\-Rand\_\-Eval}{\pageref{class_jdRand_Eval}}{}
\item \contentsline{section}{Relax\-Subset}{\pageref{class_RelaxSubset}}{}
\item \contentsline{section}{Stop\-Eval}{\pageref{class_StopEval}}{}
\end{CompactList}
\end{CompactList}
\item \contentsline{section}{Ran\-Base\-Class}{\pageref{class_RanBaseClass}}{}
\begin{CompactList}
\item \contentsline{section}{Ran\-Char}{\pageref{class_RanChar}}{}
\item \contentsline{section}{Ran\-Dbl}{\pageref{class_RanDbl}}{}
\item \contentsline{section}{Ran\-Int}{\pageref{class_RanInt}}{}
\item \contentsline{section}{Ran\-Letter}{\pageref{class_RanLetter}}{}
\item \contentsline{section}{Ran\-Word}{\pageref{class_RanWord}}{}
\end{CompactList}
\item \contentsline{section}{Ref\-Rep}{\pageref{class_RefRep}}{}
\begin{CompactList}
\item \contentsline{section}{AMatrix::AMatrix\-Rep}{\pageref{class_AMatrix__AMatrixRep}}{}
\item \contentsline{section}{DLList\-Rep}{\pageref{class_DLListRep}}{}
\end{CompactList}
\item \contentsline{section}{Residue}{\pageref{class_Residue}}{}
\item \contentsline{section}{Residue\-Registry}{\pageref{class_ResidueRegistry}}{}
\item \contentsline{section}{sd\-Edge}{\pageref{class_sdEdge}}{}
\item \contentsline{section}{sd\-Graph}{\pageref{class_sdGraph}}{}
\item \contentsline{section}{sd\-Vertex}{\pageref{class_sdVertex}}{}
\item \contentsline{section}{Segment}{\pageref{class_Segment}}{}
\item \contentsline{section}{Segments}{\pageref{class_Segments}}{}
\item \contentsline{section}{Unit\-Weight}{\pageref{class_UnitWeight}}{}
\item \contentsline{section}{z}{\pageref{class_z}}{}
\end{CompactList}
