# this file contains command lines and other stuff
# things to save for future reference.


# viwing graphs
note:  dot -Gpage="8.3,11.7" -Gratio=auto -Tps -o out.ps dotty_file
note:  gv out.ps


# atom types
cat test.pdb | cut -c 13-16 > test.atomtype


#gdb
position of atom 234 ->   *CM->M.MyGrid->myPoints[234].V@3

#generating tags
 TAGS: tags
 	find . -name "*.[hC] Makefile" -print | etags -


# remove hydrogens from pdb file
cat d1svr__.pdb | grep -v "[0-9]  H.. " | grep -v END > ! 1