make  all-recursive
make[1]: Entering directory `/home/jesus/protomol'
Making all in framework
make[2]: Entering directory `/home/jesus/protomol/framework'
Making all in base
make[3]: Entering directory `/home/jesus/protomol/framework/base'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/base'
Making all in io
make[3]: Entering directory `/home/jesus/protomol/framework/io'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/io'
Making all in parallel
make[3]: Entering directory `/home/jesus/protomol/framework/parallel'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/parallel'
Making all in topology
make[3]: Entering directory `/home/jesus/protomol/framework/topology'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/topology'
Making all in forces
make[3]: Entering directory `/home/jesus/protomol/framework/forces'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/forces'
Making all in imd
make[3]: Entering directory `/home/jesus/protomol/framework/imd'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/imd'
Making all in integrators
make[3]: Entering directory `/home/jesus/protomol/framework/integrators'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/integrators'
Making all in frontend
make[3]: Entering directory `/home/jesus/protomol/framework/frontend'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/jesus/protomol/framework/frontend'
Making all in factories
make[3]: Entering directory `/home/jesus/protomol/framework/factories'
icpc -DHAVE_CONFIG_H -I. -I. -I../.. -I../../framework/base -I../../framework/io -I../../framework/parallel -I../../framework/topology -I../../framework/forces -I../../framework/imd -I../../framework/integrators -I../../framework/frontend -I../../framework/factories    -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -c -o registerIntegratorExemplars.o registerIntegratorExemplars.cpp
registerIntegratorExemplars.cpp(23): error: expected a declaration
  <<<<<<< registerIntegratorExemplars.cpp
  ^

../../framework/parallel/ParallelType.h(29): warning #12: parsing restarts here after previous syntax error
    typedef AbstractEnumType<ParallelEnum> ParallelType;
                                                       ^

../../framework/parallel/ParallelType.h(30): error: expected a declaration
  }
  ^

../../framework/parallel/Parallel.h(33): warning #12: parsing restarts here after previous syntax error
      Parallel();
                ^

../../framework/parallel/Parallel.h(34): error: expected a declaration
      ~Parallel();
      ^

../../framework/parallel/Parallel.h(35): error: identifier "Parallel" is undefined
      Parallel(const Parallel&){}
                     ^

../../framework/parallel/Parallel.h(35): warning #880: omission of explicit type is nonstandard ("int" assumed)
      Parallel(const Parallel&){}
      ^

../../framework/parallel/Parallel.h(35): remark #1418: external definition with no prior declaration
      Parallel(const Parallel&){}
      ^

../../framework/parallel/Parallel.h(35): warning #1011: missing return statement at end of non-void function "Parallel"
      Parallel(const Parallel&){}
                                ^

../../framework/parallel/Parallel.h(36): error: function "Parallel" is not a type name
      Parallel& operator=(const Parallel&){return *this;}
      ^

../../framework/parallel/Parallel.h(36): error: "operator=" must be a member function
      Parallel& operator=(const Parallel&){return *this;}
                ^

../../framework/parallel/Parallel.h(36): error: function "Parallel" is not a type name
      Parallel& operator=(const Parallel&){return *this;}
                                ^

../../framework/parallel/Parallel.h(36): error: "this" may only be used inside a nonstatic member function
      Parallel& operator=(const Parallel&){return *this;}
                                                   ^

../../framework/parallel/Parallel.h(37): error: expected a declaration
    public:
    ^

../../framework/parallel/Parallel.h(42): warning #12: parsing restarts here after previous syntax error
      static void init(int &argc, char **&argv); ///< MPI_Init and sets id and number of process.
                                               ^

../../framework/parallel/Parallel.h(45): error: identifier "myInitialized" is undefined
      static bool initialized()          {return myInitialized;}
                                                 ^

../../framework/parallel/Parallel.h(46): error: identifier "myFinalized" is undefined
      static bool finalized()            {return myFinalized;}
                                                 ^

../../framework/parallel/Parallel.h(47): error: identifier "myInitialized" is undefined
      static bool ok()                   {return (myInitialized && !myFinalized);}
                                                  ^

../../framework/parallel/Parallel.h(47): error: identifier "myFinalized" is undefined
      static bool ok()                   {return (myInitialized && !myFinalized);}
                                                                    ^

../../framework/parallel/Parallel.h(49): error: identifier "myId" is undefined
      static int  getId()                {return myId;}
                                                 ^

../../framework/parallel/Parallel.h(50): error: identifier "myMasterId" is undefined
      static int  getMasterId()          {return myMasterId;}
                                                 ^

../../framework/parallel/Parallel.h(51): error: identifier "myNum" is undefined
      static int  getNum()               {return myNum;}
                                                 ^

../../framework/parallel/Parallel.h(52): error: identifier "myAvailableId" is undefined
      static int  getAvailableId()       {return myAvailableId;}
                                                 ^

../../framework/parallel/Parallel.h(53): error: identifier "myAvailableNum" is undefined
      static int  getAvailableNum()      {return myAvailableNum;}
                                                 ^

../../framework/parallel/Parallel.h(54): error: identifier "myIsParallel" is undefined
      static bool isParallel()           {return myIsParallel;}
                                                 ^

../../framework/parallel/Parallel.h(56): error: identifier "myIAmMaster" is undefined
      static bool iAmMaster()            {return myIAmMaster;}
                                                 ^

../../framework/parallel/Parallel.h(57): error: identifier "myIAmSlave" is undefined
      static bool iAmSlave()             {return myIAmSlave;}
                                                 ^

../../framework/parallel/Parallel.h(59): error: identifier "ParallelType" is undefined
      static ParallelType getMode()      {return myMode;}
             ^

../../framework/parallel/Parallel.h(59): error: identifier "myMode" is undefined
      static ParallelType getMode()      {return myMode;}
                                                 ^

../../framework/parallel/Parallel.h(60): error: identifier "ParallelType" is undefined
      static void setMode(ParallelType mode); 
                          ^

../../framework/parallel/Parallel.h(61): error: identifier "myMode" is undefined
      static bool isDynamic()            {return (myMode != ParallelType::STATIC);}
                                                  ^

../../framework/parallel/Parallel.h(61): error: name followed by "::" must be a class or namespace name
      static bool isDynamic()            {return (myMode != ParallelType::STATIC);}
                                                            ^

../../framework/parallel/Parallel.h(63): error: identifier "myPipeSize" is undefined
      static int getPipeSize()           {return myPipeSize;}
                                                 ^

../../framework/parallel/Parallel.h(66): error: identifier "myUseBarrier" is undefined
      static bool isBarrier()            {return myUseBarrier;}
                                                 ^

../../framework/parallel/Parallel.h(67): error: identifier "myUseBarrier" is undefined
      static void setBarrier(bool b)     {myUseBarrier = b;}
                                          ^

../../framework/parallel/Parallel.h(69): error: identifier "myMaxPackages" is undefined
      static int  getMaxPackages()       {return myMaxPackages;}
                                                 ^

../../framework/parallel/Parallel.h(71): error: expected a declaration
    public:
    ^

../../framework/parallel/Parallel.h(77): warning #12: parsing restarts here after previous syntax error
      static void bcast(Vector3DBlock* coords) ;
                                               ^

../../framework/parallel/Parallel.h(83): error: incomplete type is not allowed
      static void distribute(ScalarStructure* energy, Vector3DBlock* coords);
                  ^

../../framework/parallel/Parallel.h(83): error: identifier "ScalarStructure" is undefined
      static void distribute(ScalarStructure* energy, Vector3DBlock* coords);
                             ^

../../framework/parallel/Parallel.h(83): error: identifier "energy" is undefined
      static void distribute(ScalarStructure* energy, Vector3DBlock* coords);
                                              ^

../../framework/parallel/Parallel.h(83): error: expected a ")"
      static void distribute(ScalarStructure* energy, Vector3DBlock* coords);
                                                    ^

../../framework/parallel/Parallel.h(88): error: incomplete type is not allowed
      static void reduce(ScalarStructure* energy, Vector3DBlock* coords);
                  ^

../../framework/parallel/Parallel.h(88): error: expected a ")"
      static void reduce(ScalarStructure* energy, Vector3DBlock* coords);
                                                ^

../../framework/parallel/Parallel.h(90): error: incomplete type is not allowed
      static void reduceSlaves(Real* begin, Real* end);
                  ^

../../framework/parallel/Parallel.h(90): error: identifier "Real" is undefined
      static void reduceSlaves(Real* begin, Real* end);
                               ^

../../framework/parallel/Parallel.h(90): error: identifier "begin" is undefined
      static void reduceSlaves(Real* begin, Real* end);
                                     ^

../../framework/parallel/Parallel.h(90): error: expected a ")"
      static void reduceSlaves(Real* begin, Real* end);
                                          ^

../../framework/parallel/Parallel.h(92): error: incomplete type is not allowed
      static void bcastSlaves(Real* begin, Real* end) ;
                  ^

../../framework/parallel/Parallel.h(92): error: expected a ")"
      static void bcastSlaves(Real* begin, Real* end) ;
                                         ^

../../framework/parallel/Parallel.h(94): remark #584: omission of exception specification is incompatible with previous function "sync" (declared at line 879 of "/usr/include/unistd.h")
      static void sync();
                        ^

../../framework/parallel/Parallel.h(94): remark #172: external/internal linkage conflict with previous declaration
      static void sync();
                  ^

../../framework/parallel/Parallel.h(99): error: incomplete type is not allowed
      static void send(Vector3DBlock *vect, int address);
                  ^

../../framework/parallel/Parallel.h(99): error: identifier "Vector3DBlock" is undefined
      static void send(Vector3DBlock *vect, int address);
                       ^

../../framework/parallel/Parallel.h(99): error: identifier "vect" is undefined
      static void send(Vector3DBlock *vect, int address);
                                      ^

../../framework/parallel/Parallel.h(99): error: expected a ")"
      static void send(Vector3DBlock *vect, int address);
                                          ^

../../framework/parallel/Parallel.h(101): error: incomplete type is not allowed
      static void recv(Vector3DBlock *vect, int address);
                  ^

../../framework/parallel/Parallel.h(101): error: expected a ")"
      static void recv(Vector3DBlock *vect, int address);
                                          ^

../../framework/parallel/Parallel.h(103): error: incomplete type is not allowed
      static void sendrecv_replace(Vector3DBlock *Vect, int sendaddr, int recvaddr);
                  ^

../../framework/parallel/Parallel.h(103): error: identifier "Vect" is undefined
      static void sendrecv_replace(Vector3DBlock *Vect, int sendaddr, int recvaddr);
                                                  ^

../../framework/parallel/Parallel.h(103): error: expected a ")"
      static void sendrecv_replace(Vector3DBlock *Vect, int sendaddr, int recvaddr);
                                                      ^

../../framework/parallel/Parallel.h(105): error: variable "send" has already been defined
      static void send(Real *data, int num, int address);
                  ^

../../framework/parallel/Parallel.h(105): error: incomplete type is not allowed
      static void send(Real *data, int num, int address);
                  ^

../../framework/parallel/Parallel.h(105): error: identifier "data" is undefined
      static void send(Real *data, int num, int address);
                             ^

../../framework/parallel/Parallel.h(105): error: expected a ")"
      static void send(Real *data, int num, int address);
                                 ^

../../framework/parallel/Parallel.h(107): error: variable "recv" has already been defined
      static void recv(Real *data, int num, int address);
                  ^

../../framework/parallel/Parallel.h(107): error: incomplete type is not allowed
      static void recv(Real *data, int num, int address);
                  ^

../../framework/parallel/Parallel.h(107): error: expected a ")"
      static void recv(Real *data, int num, int address);
                                 ^

../../framework/parallel/Parallel.h(109): error: incomplete type is not allowed
      static void sendrecv(Real *senddata, int sendnum, int sendaddr, Real *recvdata, int recvnum, int recvaddr);
                  ^

../../framework/parallel/Parallel.h(109): error: identifier "senddata" is undefined
      static void sendrecv(Real *senddata, int sendnum, int sendaddr, Real *recvdata, int recvnum, int recvaddr);
                                 ^

../../framework/parallel/Parallel.h(109): error: expected a ")"
      static void sendrecv(Real *senddata, int sendnum, int sendaddr, Real *recvdata, int recvnum, int recvaddr);
                                         ^

../../framework/parallel/Parallel.h(111): error: variable "sendrecv_replace" has already been defined
      static void sendrecv_replace(Real *data, int num, int sendaddr, int recvaddr);
                  ^

../../framework/parallel/Parallel.h(111): error: incomplete type is not allowed
      static void sendrecv_replace(Real *data, int num, int sendaddr, int recvaddr);
                  ^

../../framework/parallel/Parallel.h(111): error: expected a ")"
      static void sendrecv_replace(Real *data, int num, int sendaddr, int recvaddr);
                                             ^

../../framework/parallel/Parallel.h(113): error: incomplete type is not allowed
      static void gather(Real *data, int num, Real *data_array, int address);
                  ^

../../framework/parallel/Parallel.h(113): error: expected a ")"
      static void gather(Real *data, int num, Real *data_array, int address);
                                   ^

../../framework/parallel/Parallel.h(115): error: incomplete type is not allowed
      static void allgather(Real *data, int num, Real *data_array);
                  ^

../../framework/parallel/Parallel.h(115): error: expected a ")"
      static void allgather(Real *data, int num, Real *data_array);
                                      ^

../../framework/parallel/Parallel.h(118): error: expected a declaration
    public:
    ^

../../framework/parallel/Parallel.h(123): error: expected a declaration
    public:
    ^

../../framework/parallel/Parallel.h(126): error: identifier "myNext" is undefined
      static void resetNext(){myNext = 0;myNextRange[0] =0;myNextRange[1]=0;myWorkState = getWorkState();}
                              ^

../../framework/parallel/Parallel.h(126): error: identifier "myNextRange" is undefined
      static void resetNext(){myNext = 0;myNextRange[0] =0;myNextRange[1]=0;myWorkState = getWorkState();}
                                         ^

../../framework/parallel/Parallel.h(126): error: identifier "myWorkState" is undefined
      static void resetNext(){myNext = 0;myNextRange[0] =0;myNextRange[1]=0;myWorkState = getWorkState();}
                                                                            ^

../../framework/parallel/Parallel.h(126): error: identifier "getWorkState" is undefined
      static void resetNext(){myNext = 0;myNextRange[0] =0;myNextRange[1]=0;myWorkState = getWorkState();}
                                                                                          ^

../../framework/parallel/Parallel.h(129): error: expected a declaration
    public:
    ^

../../framework/parallel/Parallel.h(135): error: expected a declaration
    private:
    ^

../../framework/parallel/Parallel.h(137): error: function "Parallel" is not a type name
      static Parallel& instance();
             ^

../../framework/parallel/Parallel.h(139): error: identifier "WorkState" is undefined
      static WorkState getWorkState(); 
             ^

../../framework/parallel/Parallel.h(144): error: expected a declaration
    public:
    ^

../../framework/parallel/Parallel.h(146): error: expected a declaration
    private:
    ^

../../framework/parallel/Parallel.h(157): error: identifier "ParallelType" is undefined
      static ParallelType     myMode;          ///< Parallelization scheme
             ^

../../framework/parallel/Parallel.h(158): error: identifier "WorkState" is undefined
      static WorkState        myWorkState;     ///< Actual work state
             ^

../../framework/parallel/Parallel.h(174): error: function "Parallel" is not a type name
      static Parallel*        obj;             ///< Instance
             ^

../../framework/parallel/Parallel.h(179): error: identifier "ParallelType" is undefined
      static ParallelType     myOldMode;       ///< Saves parallelization scheme when switching MPI off
             ^

../../framework/parallel/Parallel.h(180): error: expected a declaration
    };
    ^

../../framework/parallel/Parallel.h(182): error: expected a declaration
  }
  ^

../../framework/integrators/TakahashiSimp.h(44): warning #12: parsing restarts here after previous syntax error
  			    ScalarStructure *energies);
  			                              ^

../../framework/integrators/TakahashiSimp.h(45): error: invalid specifier outside a class declaration
      virtual void run(int numTimesteps);
      ^

../../framework/integrators/TakahashiSimp.h(46): error: invalid specifier outside a class declaration
      virtual void updateBeta( Real dt );
      ^

../../framework/integrators/TakahashiSimp.h(46): remark #1418: external definition with no prior declaration
      virtual void updateBeta( Real dt );
                   ^

../../framework/integrators/TakahashiSimp.h(46): error: incomplete type is not allowed
      virtual void updateBeta( Real dt );
                   ^

../../framework/integrators/TakahashiSimp.h(46): error: expected a ")"
      virtual void updateBeta( Real dt );
                                    ^

../../framework/integrators/TakahashiSimp.h(50): error: invalid specifier outside a class declaration
      virtual void calculateForces(Vector3DBlock  *forces, const Vector3DBlock *positions);
      ^

../../framework/integrators/TakahashiSimp.h(50): remark #1418: external definition with no prior declaration
      virtual void calculateForces(Vector3DBlock  *forces, const Vector3DBlock *positions);
                   ^

../../framework/integrators/TakahashiSimp.h(50): error: incomplete type is not allowed
      virtual void calculateForces(Vector3DBlock  *forces, const Vector3DBlock *positions);
                   ^

../../framework/integrators/TakahashiSimp.h(50): error: identifier "forces" is undefined
      virtual void calculateForces(Vector3DBlock  *forces, const Vector3DBlock *positions);
                                                   ^

../../framework/integrators/TakahashiSimp.h(50): error: expected a ")"
      virtual void calculateForces(Vector3DBlock  *forces, const Vector3DBlock *positions);
                                                         ^

../../framework/integrators/TakahashiSimp.h(55): error: expected a declaration
    private:
    ^

../../framework/integrators/TakahashiSimp.h(61): error: expected a declaration
    public:
    ^

../../framework/integrators/TakahashiSimp.h(64): error: expected a declaration
    };
    ^

../../framework/integrators/TakahashiSimp.h(66): error: expected a declaration
  }
  ^

../../framework/base/Vector.h(28): warning #12: parsing restarts here after previous syntax error
      friend class Vector<T>;
                            ^

../../framework/base/Vector.h(29): error: expected a declaration
    };
    ^

compilation aborted for registerIntegratorExemplars.cpp (code 4)
make[3]: *** [registerIntegratorExemplars.o] Error 4
make[3]: Leaving directory `/home/jesus/protomol/framework/factories'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/jesus/protomol/framework'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/jesus/protomol'
make: *** [all] Error 2