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# REM post-processing scripts
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First: 
Gather all of the energy data from each temperature ensemble
Use the shell script: getPotEandHist.sh
Modify the simname variable to match your energy files

Second:
Take the composite energy files you just generated and your temperature.set file
Place them in a directory with the Matlab script REM_PEhist.m
Make sure the input energy file names in the Matlab script match yours
This will print out energy distributions and respective data arrays

Third
Approximate the exchange rate based on the energies you just plotted
The matlab script avPNumS.m will give you the calculated exch between any two replicas

Fourth
Get new temperature spacing for a given exchange rate
The matlab script optSep.m will give you a new estimate of temperature spacing for a a given input exchange rate