# -*- makefile -*-
#
# See the LICENSE file in the top level directory for license
# information

AUTOMAKE_OPTIONS	= foreign dist-tarZ no-dependencies

#SUBDIRS =  base 

bin_PROGRAMS = dynamic

P_BASE           = $(top_srcdir)/framework/base
P_IO             = $(top_srcdir)/framework/io
P_PARALLEL       = $(top_srcdir)/framework/parallel
P_TOPOLOGY       = $(top_srcdir)/framework/topology
P_FORCES         = $(top_srcdir)/framework/forces
P_IMD            = $(top_srcdir)/framework/imd
P_INTEGRATORS    = $(top_srcdir)/framework/integrators
P_FRONTEND       = $(top_srcdir)/framework/frontend
P_FACTORIES      = $(top_srcdir)/framework/factories
#P_DYNAMICBASE    = $(top_srcdir)/applications/dynamic-app/base

P_DYNAMIC_SRC=\
TrajectoryAnalyzer.cpp\
GNM.cpp\
ANM.cpp\
dynamic.cpp

P_DYNAMIC_H=\
TrajectoryAnalyzer.h\
GNM.h\
ANM.h


## DYNAMICProtomol
dynamic_SOURCES = $(P_DYNAMIC_SRC) $(P_DYNAMIC_H)
dynamic_DEPENDENCIES = $(P_BASE)/libbase.a $(P_IO)/libio.a $(P_PARALLEL)/libparallel.a $(P_TOPOLOGY)/libtopology.a $(P_FORCES)/libforces.a $(P_IMD)/libimd.a $(P_INTEGRATORS)/libintegrators.a $(P_FRONTEND)/libfrontend.a $(P_FACTORIES)/registerTopologyExemplars.o 
INCLUDES =-I$(P_BASE) -I$(P_IO) -I$(P_PARALLEL) -I$(P_TOPOLOGY) -I$(P_FORCES) -I$(P_IMD) -I$(P_INTEGRATORS) -I$(P_FRONTEND) -I$(P_FACTORIES) 

dynamic_LDADD =-L$(P_BASE) -L$(P_IO) -L$(P_PARALLEL) -L$(P_TOPOLOGY) -L$(P_FORCES) -L$(P_IMD) -L$(P_INTEGRATORS) -L$(P_FRONTEND) -lfrontend -lintegrators -limd -lforces -ltopology -lparallel -lio -lbase @SOCKET_LIBS@ @FFT_LIBS@ @PNG_LIBS@
SOURCEFILES		= $(dynamic_SOURCES)


include $(top_srcdir)/Makefile.depend