# base

AUTOMAKE_OPTIONS	= foreign dist-tarZ no-dependencies

#Change AR Flag
AR = $(AR1)
libISGfrontend_a_AR = $(AR2) 

P_BASE           = $(top_srcdir)/framework/base
P_IO             = $(top_srcdir)/framework/io
P_PARALLEL       = $(top_srcdir)/framework/parallel
P_TOPOLOGY       = $(top_srcdir)/framework/topology
P_FORCES         = $(top_srcdir)/framework/forces
P_IMD            = $(top_srcdir)/framework/imd
P_INTEGRATORS    = $(top_srcdir)/framework/integrators
P_FRONTEND       = $(top_srcdir)/framework/frontend
P_FACTORIES      = $(top_srcdir)/framework/factories
P_ISGBASE        = $(top_srcdir)/applications/iSGProtomol-app/base
P_ISGIO          = $(top_srcdir)/applications/iSGProtomol-app/io
P_ISGFORCES      = $(top_srcdir)/applications/iSGProtomol-app/forces
P_ISGFRONTEND    = $(top_srcdir)/applications/iSGProtomol-app/frontend
P_ISGTOPOLOGY    = $(top_srcdir)/applications/iSGProtomol-app/topology
P_ISGINTEGRATORS = $(top_srcdir)/applications/iSGProtomol-app/integrators

# base Sources
P_ISGFRONTEND_SRC =\
OutputFinalXSC.cpp\
OutputISGProperties.cpp\
OutputFinalPSF.cpp\
buildISGTopology.cpp

# base Includes
P_ISGFRONTEND_H =\
OutputFinalXSC.h\
OutputISGProperties.h\
OutputFinalPSF.h\
buildISGTopology.h

# Temporary library to get subdirectory source files, blech!
noinst_LIBRARIES = libISGfrontend.a

libISGfrontend_a_SOURCES = $(P_ISGFRONTEND_SRC) $(P_ISGFRONTEND_H)

INCLUDES = @FFT_CFLAGS@ -I$(P_ISGFRONTEND) -I$(P_ISGTOPOLOGY) -I$(P_ISGBASE) -I$(P_ISGIO) -I$(P_ISGINTEGRATORS) -I$(P_BASE) -I$(P_IO) -I$(P_FRONTEND) -I$(P_TOPOLOGY) -I$(P_INTEGRATORS) -I$(P_FORCES) 

SOURCEFILES = $(P_ISGFRONTEND_SRC)

include $(top_srcdir)/Makefile.depend