This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by protomol configure 2.0.4, which was generated by GNU Autoconf 2.59. Invocation command line was $ ./configure --with-lapack=simtk --with-lapack-dir=/afs/nd.edu/user25/tcickovs/Research/LAPACK ## --------- ## ## Platform. ## ## --------- ## hostname = manganese uname -m = i686 uname -r = 2.6.9-42.ELsmp uname -s = Linux uname -v = #1 SMP Wed Jul 12 23:27:17 EDT 2006 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /afs/nd.edu/user25/tcickovs/Research/SWIG1.3.31/bin/ PATH: /afs/nd.edu/user25/tcickovs/Research/PYTHON2.5/bin PATH: /afs/nd.edu/user37/condor/software/bin/ PATH: /afs/nd.edu/user25/tcickovs/Research/QT3.3/qt/bin PATH: /orasoft/9i/bin PATH: /orasoft/9i/orainst PATH: /afs/nd.edu/user28/izaguirr/Research/TEMP/include PATH: /afs/nd.edu/user28/izaguirr/bin PATH: /afs/nd.edu/user28/izaguirr/Research/vtk/ImageMagick-5.4.3/bin PATH: / PATH: /afs/nd.edu/user12/pvirtue/Public/ImageMagick-5.4.3/bin PATH: . PATH: /afs/nd.edu/user28/izaguirr/Research/vtkinst/include/vtk PATH: /afs/nd.edu/user25/tcickovs/install/bin PATH: /afs/nd.edu/user25/tcickovs/install/include PATH: /afs/nd.edu/user38/und/Software/lnx_x86/usr/local/bin PATH: /afs/nd.edu/user38/und/Software/lnx_x86/usr/local/sbin PATH: /usr/j2sdk1.4.1/bin PATH: /afs/nd.edu/user25/tcickovs/Research/PYTHON2.5/bin PATH: /afs/nd.edu/user37/condor/software/bin/ PATH: /afs/nd.edu/user25/tcickovs/Research/QT3.3/qt/bin PATH: /orasoft/9i/bin PATH: /orasoft/9i/orainst PATH: /afs/nd.edu/user28/izaguirr/Research/TEMP/include PATH: /afs/nd.edu/user28/izaguirr/bin PATH: /afs/nd.edu/user28/izaguirr/Research/vtk/ImageMagick-5.4.3/bin PATH: / PATH: /afs/nd.edu/user12/pvirtue/Public/ImageMagick-5.4.3/bin PATH: . PATH: /afs/nd.edu/user28/izaguirr/Research/vtkinst/include/vtk PATH: /afs/nd.edu/user25/tcickovs/install/bin PATH: /afs/nd.edu/user25/tcickovs/install/include PATH: /afs/nd.edu/user38/und/Software/lnx_x86/usr/local/bin PATH: /afs/nd.edu/user38/und/Software/lnx_x86/usr/local/sbin PATH: /usr/j2sdk1.4.1/bin PATH: /opt/und/schrodinger/2006 PATH: /opt/und/schrodinger/2006/utilities PATH: /opt/und/local/bin PATH: /opt/und/mathematica/6.0/Executables PATH: /opt/und/maple/11/bin PATH: /opt/und/intel/compiler81/bin PATH: /opt/und/pgi/6.1-2/linux86/6.1/bin PATH: /afs/nd.edu/i386_linux24/opt/und/matlab/7.4/bin PATH: /opt/und/modules/3.1.6/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/X11R6/bin PATH: /afs/nd.edu/user25/tcickovs/bin PATH: . PATH: /afs/nd.edu/user28/izaguirr/bin PATH: /afs/nd.edu/user25/tcickovs/bin PATH: . PATH: /afs/nd.edu/user28/izaguirr/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1431: checking for a BSD-compatible install configure:1486: result: /usr/bin/install -c configure:1497: checking whether build environment is sane configure:1540: result: yes configure:1605: checking for gawk configure:1621: found /bin/gawk configure:1631: result: gawk configure:1641: checking whether make sets $(MAKE) configure:1661: result: yes configure:1833: checking major version configure:1835: result: 2 configure:1837: checking minor version configure:1839: result: 0 configure:1841: checking patchlevel configure:1843: result: 4 configure:2180: checking for aCC configure:2209: result: no configure:2180: checking for mpCC_r configure:2209: result: no configure:2180: checking for xlC_r configure:2209: result: no configure:2180: checking for xlC configure:2209: result: no configure:2180: checking for xlc++ configure:2209: result: no configure:2180: checking for CC configure:2209: result: no configure:2180: checking for icpc configure:2196: found /opt/und/intel/compiler81/bin/icpc configure:2206: result: icpc configure:2222: checking for C++ compiler version configure:2225: icpc --version &5 8.1 configure:2228: $? = 0 configure:2230: icpc -v &5 Version 8.1 configure:2233: $? = 0 configure:2235: icpc -V &5 Intel(R) C++ Compiler for 32-bit applications, Version 8.1 Build 20050823Z Package ID: l_cc_pc_8.1.034 Copyright (C) 1985-2005 Intel Corporation. All rights reserved. FOR NON-COMMERCIAL USE ONLY configure:2238: $? = 0 configure:2261: checking for C++ compiler default output file name configure:2264: icpc conftest.cc >&5 configure:2267: $? = 0 configure:2313: result: a.out configure:2318: checking whether the C++ compiler works configure:2324: ./a.out configure:2327: $? = 0 configure:2344: result: yes configure:2351: checking whether we are cross compiling configure:2353: result: no configure:2356: checking for suffix of executables configure:2358: icpc -o conftest conftest.cc >&5 configure:2361: $? = 0 configure:2386: result: configure:2392: checking for suffix of object files configure:2413: icpc -c conftest.cc >&5 configure:2416: $? = 0 configure:2438: result: o configure:2442: checking whether we are using the GNU C++ compiler configure:2466: icpc -c conftest.cc >&5 configure:2472: $? = 0 configure:2476: test -z || test ! -s conftest.err configure:2479: $? = 0 configure:2482: test -s conftest.o configure:2485: $? = 0 configure:2498: result: yes configure:2504: checking whether icpc accepts -g configure:2525: icpc -c -g conftest.cc >&5 configure:2531: $? = 0 configure:2535: test -z || test ! -s conftest.err configure:2538: $? = 0 configure:2541: test -s conftest.o configure:2544: $? = 0 configure:2555: result: yes configure:2597: icpc -c -g -O2 conftest.cc >&5 configure:2603: $? = 0 configure:2607: test -z || test ! -s conftest.err configure:2610: $? = 0 configure:2613: test -s conftest.o configure:2616: $? = 0 configure:2642: icpc -c -g -O2 conftest.cc >&5 conftest.cc(20): error: identifier "exit" is undefined exit (42); ^ compilation aborted for conftest.cc (code 2) configure:2648: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | /* end confdefs.h. */ | | int | main () | { | exit (42); | ; | return 0; | } configure:2597: icpc -c -g -O2 conftest.cc >&5 conftest.cc(16): error: namespace "std" has no member "exit" extern "C" void std::exit (int) throw (); using std::exit; ^ conftest.cc(16): error: namespace "std" has no member "exit" extern "C" void std::exit (int) throw (); using std::exit; ^ compilation aborted for conftest.cc (code 2) configure:2603: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | /* end confdefs.h. */ | extern "C" void std::exit (int) throw (); using std::exit; | #include | int | main () | { | exit (42); | ; | return 0; | } configure:2597: icpc -c -g -O2 conftest.cc >&5 conftest.cc(16): error: namespace "std" has no member "exit" extern "C" void std::exit (int); using std::exit; ^ conftest.cc(16): error: namespace "std" has no member "exit" extern "C" void std::exit (int); using std::exit; ^ compilation aborted for conftest.cc (code 2) configure:2603: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | /* end confdefs.h. */ | extern "C" void std::exit (int); using std::exit; | #include | int | main () | { | exit (42); | ; | return 0; | } configure:2597: icpc -c -g -O2 conftest.cc >&5 configure:2603: $? = 0 configure:2607: test -z || test ! -s conftest.err configure:2610: $? = 0 configure:2613: test -s conftest.o configure:2616: $? = 0 configure:2642: icpc -c -g -O2 conftest.cc >&5 configure:2648: $? = 0 configure:2652: test -z || test ! -s conftest.err configure:2655: $? = 0 configure:2658: test -s conftest.o configure:2661: $? = 0 configure:2695: checking for style of include used by make configure:2723: result: GNU configure:2751: checking dependency style of icpc configure:2841: result: none configure:2861: result: Auto detection of compiler: icpc configure:2868: checking preset g++ for SUN with optimization flags configure:2882: result: no configure:2888: checking preset CC fro IRIX with MPI and optimization flags configure:2901: result: no configure:2906: checking preset CC for IRIX with MPI and debugging flags configure:2919: result: no configure:2924: checking preset CC for IRIX with optimization flags configure:2937: result: no configure:2943: checking preset CC for IRIX with debugging flags configure:2956: result: no configure:2962: checking preset icc for generic with optimization flags configure:2968: result: yes configure:3028: checking for icpc configure:3044: found /opt/und/intel/compiler81/bin/icpc configure:3054: result: icpc configure:3070: checking for C++ compiler version configure:3073: icpc --version &5 8.1 configure:3076: $? = 0 configure:3078: icpc -v &5 Version 8.1 configure:3081: $? = 0 configure:3083: icpc -V &5 Intel(R) C++ Compiler for 32-bit applications, Version 8.1 Build 20050823Z Package ID: l_cc_pc_8.1.034 Copyright (C) 1985-2005 Intel Corporation. All rights reserved. FOR NON-COMMERCIAL USE ONLY configure:3086: $? = 0 configure:3089: checking whether we are using the GNU C++ compiler configure:3145: result: yes configure:3151: checking whether icpc accepts -g configure:3202: result: yes configure:3244: icpc -c -g -O2 conftest.cc >&5 configure:3250: $? = 0 configure:3254: test -z || test ! -s conftest.err configure:3257: $? = 0 configure:3260: test -s conftest.o configure:3263: $? = 0 configure:3289: icpc -c -g -O2 conftest.cc >&5 configure:3295: $? = 0 configure:3299: test -z || test ! -s conftest.err configure:3302: $? = 0 configure:3305: test -s conftest.o configure:3308: $? = 0 configure:3333: checking dependency style of icpc configure:3423: result: none configure:3498: checking for icpc configure:3514: found /opt/und/intel/compiler81/bin/icpc configure:3524: result: icpc configure:3545: checking for C compiler version configure:3548: icpc --version &5 8.1 configure:3551: $? = 0 configure:3553: icpc -v &5 Version 8.1 configure:3556: $? = 0 configure:3558: icpc -V &5 Intel(R) C++ Compiler for 32-bit applications, Version 8.1 Build 20050823Z Package ID: l_cc_pc_8.1.034 Copyright (C) 1985-2005 Intel Corporation. All rights reserved. FOR NON-COMMERCIAL USE ONLY configure:3561: $? = 0 configure:3564: checking whether we are using the GNU C compiler configure:3588: icpc -c conftest.c >&5 configure:3594: $? = 0 configure:3598: test -z || test ! -s conftest.err configure:3601: $? = 0 configure:3604: test -s conftest.o configure:3607: $? = 0 configure:3620: result: yes configure:3626: checking whether icpc accepts -g configure:3647: icpc -c -g conftest.c >&5 configure:3653: $? = 0 configure:3657: test -z || test ! -s conftest.err configure:3660: $? = 0 configure:3663: test -s conftest.o configure:3666: $? = 0 configure:3677: result: yes configure:3694: checking for icpc option to accept ANSI C configure:3764: icpc -c -g -O2 conftest.c >&5 conftest.c(26): error: identifier "p" is undefined static char *e (p, i) ^ conftest.c(26): error: expected a ")" static char *e (p, i) ^ conftest.c(27): error: expected a ";" char **p; ^ conftest.c(29): error: expected a declaration { ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ compilation aborted for conftest.c (code 2) configure:3770: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include | #include | #include | #include | /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ | struct buf { int x; }; | FILE * (*rcsopen) (struct buf *, struct stat *, int); | static char *e (p, i) | char **p; | int i; | { | return p[i]; | } | static char *f (char * (*g) (char **, int), char **p, ...) | { | char *s; | va_list v; | va_start (v,p); | s = g (p, va_arg (v,int)); | va_end (v); | return s; | } | | /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has | function prototypes and stuff, but not '\xHH' hex character constants. | These don't provoke an error unfortunately, instead are silently treated | as 'x'. The following induces an error, until -std1 is added to get | proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an | array size at least. It's necessary to write '\x00'==0 to get something | that's true only with -std1. */ | int osf4_cc_array ['\x00' == 0 ? 1 : -1]; | | int test (int i, double x); | struct s1 {int (*f) (int a);}; | struct s2 {int (*f) (double a);}; | int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); | int argc; | char **argv; | int | main () | { | return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; | ; | return 0; | } configure:3764: icpc -qlanglvl=ansi -c -g -O2 conftest.c >&5 icpc: Command line warning: ignoring option '-ql'; no argument required conftest.c(26): error: identifier "p" is undefined static char *e (p, i) ^ conftest.c(26): error: expected a ")" static char *e (p, i) ^ conftest.c(27): error: expected a ";" char **p; ^ conftest.c(29): error: expected a declaration { ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ compilation aborted for conftest.c (code 2) configure:3770: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include | #include | #include | #include | /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ | struct buf { int x; }; | FILE * (*rcsopen) (struct buf *, struct stat *, int); | static char *e (p, i) | char **p; | int i; | { | return p[i]; | } | static char *f (char * (*g) (char **, int), char **p, ...) | { | char *s; | va_list v; | va_start (v,p); | s = g (p, va_arg (v,int)); | va_end (v); | return s; | } | | /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has | function prototypes and stuff, but not '\xHH' hex character constants. | These don't provoke an error unfortunately, instead are silently treated | as 'x'. The following induces an error, until -std1 is added to get | proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an | array size at least. It's necessary to write '\x00'==0 to get something | that's true only with -std1. */ | int osf4_cc_array ['\x00' == 0 ? 1 : -1]; | | int test (int i, double x); | struct s1 {int (*f) (int a);}; | struct s2 {int (*f) (double a);}; | int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); | int argc; | char **argv; | int | main () | { | return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; | ; | return 0; | } configure:3764: icpc -std1 -c -g -O2 conftest.c >&5 icpc: Command line error: invalid argument for option '-std' configure:3770: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include | #include | #include | #include | /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ | struct buf { int x; }; | FILE * (*rcsopen) (struct buf *, struct stat *, int); | static char *e (p, i) | char **p; | int i; | { | return p[i]; | } | static char *f (char * (*g) (char **, int), char **p, ...) | { | char *s; | va_list v; | va_start (v,p); | s = g (p, va_arg (v,int)); | va_end (v); | return s; | } | | /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has | function prototypes and stuff, but not '\xHH' hex character constants. | These don't provoke an error unfortunately, instead are silently treated | as 'x'. The following induces an error, until -std1 is added to get | proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an | array size at least. It's necessary to write '\x00'==0 to get something | that's true only with -std1. */ | int osf4_cc_array ['\x00' == 0 ? 1 : -1]; | | int test (int i, double x); | struct s1 {int (*f) (int a);}; | struct s2 {int (*f) (double a);}; | int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); | int argc; | char **argv; | int | main () | { | return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; | ; | return 0; | } configure:3764: icpc -Ae -c -g -O2 conftest.c >&5 conftest.c(26): error: identifier "p" is undefined static char *e (p, i) ^ conftest.c(26): error: expected a ")" static char *e (p, i) ^ conftest.c(27): error: expected a ";" char **p; ^ conftest.c(29): error: expected a declaration { ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ compilation aborted for conftest.c (code 2) configure:3770: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include | #include | #include | #include | /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ | struct buf { int x; }; | FILE * (*rcsopen) (struct buf *, struct stat *, int); | static char *e (p, i) | char **p; | int i; | { | return p[i]; | } | static char *f (char * (*g) (char **, int), char **p, ...) | { | char *s; | va_list v; | va_start (v,p); | s = g (p, va_arg (v,int)); | va_end (v); | return s; | } | | /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has | function prototypes and stuff, but not '\xHH' hex character constants. | These don't provoke an error unfortunately, instead are silently treated | as 'x'. The following induces an error, until -std1 is added to get | proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an | array size at least. It's necessary to write '\x00'==0 to get something | that's true only with -std1. */ | int osf4_cc_array ['\x00' == 0 ? 1 : -1]; | | int test (int i, double x); | struct s1 {int (*f) (int a);}; | struct s2 {int (*f) (double a);}; | int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); | int argc; | char **argv; | int | main () | { | return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; | ; | return 0; | } configure:3764: icpc -Aa -D_HPUX_SOURCE -c -g -O2 conftest.c >&5 conftest.c(26): error: identifier "p" is undefined static char *e (p, i) ^ conftest.c(26): error: expected a ")" static char *e (p, i) ^ conftest.c(27): error: expected a ";" char **p; ^ conftest.c(29): error: expected a declaration { ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ compilation aborted for conftest.c (code 2) configure:3770: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include | #include | #include | #include | /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ | struct buf { int x; }; | FILE * (*rcsopen) (struct buf *, struct stat *, int); | static char *e (p, i) | char **p; | int i; | { | return p[i]; | } | static char *f (char * (*g) (char **, int), char **p, ...) | { | char *s; | va_list v; | va_start (v,p); | s = g (p, va_arg (v,int)); | va_end (v); | return s; | } | | /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has | function prototypes and stuff, but not '\xHH' hex character constants. | These don't provoke an error unfortunately, instead are silently treated | as 'x'. The following induces an error, until -std1 is added to get | proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an | array size at least. It's necessary to write '\x00'==0 to get something | that's true only with -std1. */ | int osf4_cc_array ['\x00' == 0 ? 1 : -1]; | | int test (int i, double x); | struct s1 {int (*f) (int a);}; | struct s2 {int (*f) (double a);}; | int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); | int argc; | char **argv; | int | main () | { | return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; | ; | return 0; | } configure:3764: icpc -Xc -D__EXTENSIONS__ -c -g -O2 conftest.c >&5 conftest.c(26): error: identifier "p" is undefined static char *e (p, i) ^ conftest.c(26): error: expected a ")" static char *e (p, i) ^ conftest.c(27): error: expected a ";" char **p; ^ conftest.c(29): error: expected a declaration { ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ conftest.c(60): error: argument of type "char *" is incompatible with parameter of type "char *(*)(char **, int)" return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ^ compilation aborted for conftest.c (code 2) configure:3770: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include | #include | #include | #include | /* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ | struct buf { int x; }; | FILE * (*rcsopen) (struct buf *, struct stat *, int); | static char *e (p, i) | char **p; | int i; | { | return p[i]; | } | static char *f (char * (*g) (char **, int), char **p, ...) | { | char *s; | va_list v; | va_start (v,p); | s = g (p, va_arg (v,int)); | va_end (v); | return s; | } | | /* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has | function prototypes and stuff, but not '\xHH' hex character constants. | These don't provoke an error unfortunately, instead are silently treated | as 'x'. The following induces an error, until -std1 is added to get | proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an | array size at least. It's necessary to write '\x00'==0 to get something | that's true only with -std1. */ | int osf4_cc_array ['\x00' == 0 ? 1 : -1]; | | int test (int i, double x); | struct s1 {int (*f) (int a);}; | struct s2 {int (*f) (double a);}; | int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); | int argc; | char **argv; | int | main () | { | return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; | ; | return 0; | } configure:3801: result: none needed configure:3819: icpc -c -g -O2 conftest.c >&5 configure:3825: $? = 0 configure:3829: test -z || test ! -s conftest.err configure:3832: $? = 0 configure:3835: test -s conftest.o configure:3838: $? = 0 configure:3865: icpc -c -g -O2 conftest.c >&5 configure:3871: $? = 0 configure:3875: test -z || test ! -s conftest.err configure:3878: $? = 0 configure:3881: test -s conftest.o configure:3884: $? = 0 configure:3910: icpc -c -g -O2 conftest.c >&5 configure:3916: $? = 0 configure:3920: test -z || test ! -s conftest.err configure:3923: $? = 0 configure:3926: test -s conftest.o configure:3929: $? = 0 configure:3960: checking dependency style of icpc configure:4050: result: none configure:4076: checking preset icc for generic with debugging flags configure:5185: result: no configure:5190: checking preset icc for generic with MPICH and optimization flags configure:6299: result: no configure:6304: checking preset icc for generic with MPICH and debugging flags configure:7413: result: no configure:7419: checking preset g++ for generic with MPICH flags configure:7903: result: no configure:7908: checking preset g++ for generic with MPICH debug flags configure:8392: result: no configure:8397: checking preset g++ for Xeon with no optimization flags configure:8410: result: no configure:8415: checking preset g++ for Xeon with optimization flags configure:8428: result: no configure:8433: checking preset g++ for Opteron 64 with no optimization flags configure:8446: result: no configure:8451: checking preset g++ for Opteron 64 with optimization flags configure:8464: result: no configure:8469: checking preset g++ for generic with optimization flags configure:8482: result: no configure:8487: checking preset g++ for generic with debugging flags configure:8500: result: no configure:8505: checking preset g++ for generic with debugging and gdb flags configure:8518: result: no configure:8524: checking preset xlC for PPC with optimization flags configure:8537: result: no configure:8542: checking preset xlC for PPC with debugging flags configure:8555: result: no configure:8561: checking preset xlC for AIX with optimization flags configure:8574: result: no configure:8579: checking preset xlC for AIX with debugging flags configure:8592: result: no configure:8597: checking preset xlC for AIX with MPI and optimization flags configure:8611: result: no configure:8616: checking preset xlC for AIX with MPI and debugging flags configure:8629: result: no configure:8633: checking preset aCC for HPUX with optimization flags configure:8646: result: no configure:8650: checking preset aCC for HPUX with debugging flags configure:8663: result: no configure:8667: checking preset aCC for HPUX with MPI and optimization flags configure:9151: result: no configure:9155: checking preset aCC for HPUX with MPI and debugging flags configure:9639: result: no configure:9764: checking for C++ compiler version configure:9767: icpc --version &5 8.1 configure:9770: $? = 0 configure:9772: icpc -v &5 Version 8.1 configure:9775: $? = 0 configure:9777: icpc -V &5 Intel(R) C++ Compiler for 32-bit applications, Version 8.1 Build 20050823Z Package ID: l_cc_pc_8.1.034 Copyright (C) 1985-2005 Intel Corporation. All rights reserved. FOR NON-COMMERCIAL USE ONLY configure:9780: $? = 0 configure:9783: checking whether we are using the GNU C++ compiler configure:9839: result: yes configure:9845: checking whether icpc accepts -g configure:9896: result: yes configure:9938: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:9944: $? = 0 configure:9948: test -z || test ! -s conftest.err configure:9951: $? = 0 configure:9954: test -s conftest.o configure:9957: $? = 0 configure:9983: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:9989: $? = 0 configure:9993: test -z || test ! -s conftest.err configure:9996: $? = 0 configure:9999: test -s conftest.o configure:10002: $? = 0 configure:10027: checking dependency style of icpc configure:10117: result: none configure:10139: checking how to run the C++ preprocessor configure:10170: icpc -E conftest.cc configure:10176: $? = 0 configure:10208: icpc -E conftest.cc conftest.cc(19): catastrophic error: could not open source file "ac_nonexistent.h" #include ^ configure:10214: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include configure:10253: result: icpc -E configure:10277: icpc -E conftest.cc configure:10283: $? = 0 configure:10315: icpc -E conftest.cc conftest.cc(19): catastrophic error: could not open source file "ac_nonexistent.h" #include ^ configure:10321: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | #include configure:10410: checking for gcc configure:10436: result: icpc configure:10680: checking for C compiler version configure:10683: icpc --version &5 8.1 configure:10686: $? = 0 configure:10688: icpc -v &5 Version 8.1 configure:10691: $? = 0 configure:10693: icpc -V &5 Intel(R) C++ Compiler for 32-bit applications, Version 8.1 Build 20050823Z Package ID: l_cc_pc_8.1.034 Copyright (C) 1985-2005 Intel Corporation. All rights reserved. FOR NON-COMMERCIAL USE ONLY configure:10696: $? = 0 configure:10699: checking whether we are using the GNU C compiler configure:10755: result: yes configure:10761: checking whether icpc accepts -g configure:10812: result: yes configure:10829: checking for icpc option to accept ANSI C configure:10936: result: none needed configure:10954: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg conftest.c >&5 configure:10960: $? = 0 configure:10964: test -z || test ! -s conftest.err configure:10967: $? = 0 configure:10970: test -s conftest.o configure:10973: $? = 0 configure:11000: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg conftest.c >&5 conftest.c(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:11006: $? = 0 configure:11010: test -z || test ! -s conftest.err configure:11013: $? = 0 configure:11016: test -s conftest.o configure:11019: $? = 0 configure:11045: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg conftest.c >&5 conftest.c(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:11051: $? = 0 configure:11055: test -z || test ! -s conftest.err configure:11058: $? = 0 configure:11061: test -s conftest.o configure:11064: $? = 0 configure:11095: checking dependency style of icpc configure:11185: result: none configure:11215: checking for a BSD-compatible install configure:11270: result: /usr/bin/install -c configure:11322: checking for ranlib configure:11338: found /usr/bin/ranlib configure:11349: result: ranlib configure:11366: checking using MPI configure:11369: result: no configure:11379: checking for X configure:11609: result: libraries /usr/X11R6/lib, headers /usr/X11R6/include configure:11781: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl -L/usr/X11R6/lib -lX11 >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(26): remark #1419: external declaration in primary source file char XOpenDisplay (); ^ configure:11787: $? = 0 configure:11791: test -z || test ! -s conftest.err configure:11794: $? = 0 configure:11797: test -s conftest configure:11800: $? = 0 configure:11958: checking for gethostbyname configure:12015: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(43): remark #1419: external declaration in primary source file char gethostbyname (); ^ conftest.cc(50): remark #1418: external definition with no prior declaration char (*f) () = gethostbyname; ^ conftest.cc(61): remark #111: statement is unreachable return 0; ^ configure:12021: $? = 0 configure:12025: test -z || test ! -s conftest.err configure:12028: $? = 0 configure:12031: test -s conftest configure:12034: $? = 0 configure:12046: result: yes configure:12197: checking for connect configure:12254: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(43): remark #1419: external declaration in primary source file char connect (); ^ conftest.cc(50): remark #1418: external definition with no prior declaration char (*f) () = connect; ^ conftest.cc(61): remark #111: statement is unreachable return 0; ^ configure:12260: $? = 0 configure:12264: test -z || test ! -s conftest.err configure:12267: $? = 0 configure:12270: test -s conftest configure:12273: $? = 0 configure:12285: result: yes configure:12360: checking for remove configure:12417: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(43): remark #1419: external declaration in primary source file char remove (); ^ conftest.cc(50): remark #1418: external definition with no prior declaration char (*f) () = remove; ^ conftest.cc(61): remark #111: statement is unreachable return 0; ^ configure:12423: $? = 0 configure:12427: test -z || test ! -s conftest.err configure:12430: $? = 0 configure:12433: test -s conftest configure:12436: $? = 0 configure:12448: result: yes configure:12523: checking for shmat configure:12580: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(43): remark #1419: external declaration in primary source file char shmat (); ^ conftest.cc(50): remark #1418: external definition with no prior declaration char (*f) () = shmat; ^ conftest.cc(61): remark #111: statement is unreachable return 0; ^ configure:12586: $? = 0 configure:12590: test -z || test ! -s conftest.err configure:12593: $? = 0 configure:12596: test -s conftest configure:12599: $? = 0 configure:12611: result: yes configure:12695: checking for IceConnectionNumber in -lICE configure:12725: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -L/usr/X11R6/lib conftest.cc -lICE -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(26): remark #1419: external declaration in primary source file char IceConnectionNumber (); ^ configure:12731: $? = 0 configure:12735: test -z || test ! -s conftest.err configure:12738: $? = 0 configure:12741: test -s conftest configure:12744: $? = 0 configure:12757: result: yes configure:12783: checking for limits configure:12804: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:12810: $? = 0 configure:12814: test -z || test ! -s conftest.err configure:12817: $? = 0 configure:12820: test -s conftest.o configure:12823: $? = 0 configure:12837: result: yes configure:12845: checking for sstream configure:12866: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:12872: $? = 0 configure:12876: test -z || test ! -s conftest.err configure:12879: $? = 0 configure:12882: test -s conftest.o configure:12885: $? = 0 configure:12899: result: yes configure:12907: checking for partial template specialization configure:12931: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(28): remark #177: variable "rA" was declared but never referenced RefArray rA = a[0]; ^ configure:12937: $? = 0 configure:12941: test -z || test ! -s conftest.err configure:12944: $? = 0 configure:12947: test -s conftest.o configure:12950: $? = 0 configure:12964: result: yes configure:12974: checking for socket in -lsocket configure:13004: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lsocket -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(26): remark #1419: external declaration in primary source file char socket (); ^ ld: cannot find -lsocket configure:13010: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char socket (); | int | main () | { | socket (); | ; | return 0; | } configure:13036: result: no configure:13055: checking for egrep configure:13065: result: grep -E configure:13070: checking for ANSI C header files configure:13095: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:13101: $? = 0 configure:13105: test -z || test ! -s conftest.err configure:13108: $? = 0 configure:13111: test -s conftest.o configure:13114: $? = 0 configure:13203: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:13206: $? = 0 configure:13208: ./conftest configure:13211: $? = 0 configure:13226: result: yes configure:13250: checking for sys/types.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(21): remark #193: zero used for undefined preprocessing identifier #if HAVE_SYS_TYPES_H ^ conftest.cc(24): remark #193: zero used for undefined preprocessing identifier #if HAVE_SYS_STAT_H ^ conftest.cc(35): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRING_H ^ conftest.cc(41): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRINGS_H ^ conftest.cc(44): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(47): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(51): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for sys/stat.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(25): remark #193: zero used for undefined preprocessing identifier #if HAVE_SYS_STAT_H ^ conftest.cc(36): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRING_H ^ conftest.cc(42): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRINGS_H ^ conftest.cc(45): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(48): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(52): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for stdlib.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(37): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRING_H ^ conftest.cc(43): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRINGS_H ^ conftest.cc(46): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(49): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(53): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for string.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(38): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRING_H ^ conftest.cc(44): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRINGS_H ^ conftest.cc(47): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(50): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(54): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for memory.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(40): remark #193: zero used for undefined preprocessing identifier # if !STDC_HEADERS && HAVE_MEMORY_H ^ conftest.cc(45): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRINGS_H ^ conftest.cc(48): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(51): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(55): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for strings.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(46): remark #193: zero used for undefined preprocessing identifier #if HAVE_STRINGS_H ^ conftest.cc(49): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(52): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(56): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for inttypes.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(50): remark #193: zero used for undefined preprocessing identifier #if HAVE_INTTYPES_H ^ conftest.cc(53): remark #193: zero used for undefined preprocessing identifier # if HAVE_STDINT_H ^ conftest.cc(57): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for stdint.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(58): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13250: checking for unistd.h configure:13266: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(59): remark #193: zero used for undefined preprocessing identifier #if HAVE_UNISTD_H ^ configure:13272: $? = 0 configure:13276: test -z || test ! -s conftest.err configure:13279: $? = 0 configure:13282: test -s conftest.o configure:13285: $? = 0 configure:13296: result: yes configure:13318: checking sys/socket.h usability configure:13330: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:13336: $? = 0 configure:13340: test -z || test ! -s conftest.err configure:13343: $? = 0 configure:13346: test -s conftest.o configure:13349: $? = 0 configure:13359: result: yes configure:13363: checking sys/socket.h presence configure:13373: icpc -E conftest.cc configure:13379: $? = 0 configure:13399: result: yes configure:13434: checking for sys/socket.h configure:13441: result: yes configure:13453: checking for socketlen type configure:13478: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:13484: $? = 0 configure:13488: test -z || test ! -s conftest.err configure:13491: $? = 0 configure:13494: test -s conftest.o configure:13497: $? = 0 configure:13666: result: socklen_t configure:13678: checking for char configure:13702: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(72): remark #111: statement is unreachable return 0; ^ configure:13708: $? = 0 configure:13712: test -z || test ! -s conftest.err configure:13715: $? = 0 configure:13718: test -s conftest.o configure:13721: $? = 0 configure:13732: result: yes configure:13735: checking size of char configure:14054: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(64): remark #1418: external definition with no prior declaration long longval () { return (long) (sizeof (char)); } ^ conftest.cc(65): remark #1418: external definition with no prior declaration unsigned long ulongval () { return (long) (sizeof (char)); } ^ configure:14057: $? = 0 configure:14059: ./conftest configure:14062: $? = 0 configure:14085: result: 1 configure:14092: checking for short configure:14116: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(73): remark #111: statement is unreachable return 0; ^ configure:14122: $? = 0 configure:14126: test -z || test ! -s conftest.err configure:14129: $? = 0 configure:14132: test -s conftest.o configure:14135: $? = 0 configure:14146: result: yes configure:14149: checking size of short configure:14468: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(65): remark #1418: external definition with no prior declaration long longval () { return (long) (sizeof (short)); } ^ conftest.cc(66): remark #1418: external definition with no prior declaration unsigned long ulongval () { return (long) (sizeof (short)); } ^ configure:14471: $? = 0 configure:14473: ./conftest configure:14476: $? = 0 configure:14499: result: 2 configure:14506: checking for int configure:14530: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(74): remark #111: statement is unreachable return 0; ^ configure:14536: $? = 0 configure:14540: test -z || test ! -s conftest.err configure:14543: $? = 0 configure:14546: test -s conftest.o configure:14549: $? = 0 configure:14560: result: yes configure:14563: checking size of int configure:14882: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(66): remark #1418: external definition with no prior declaration long longval () { return (long) (sizeof (int)); } ^ conftest.cc(67): remark #1418: external definition with no prior declaration unsigned long ulongval () { return (long) (sizeof (int)); } ^ configure:14885: $? = 0 configure:14887: ./conftest configure:14890: $? = 0 configure:14913: result: 4 configure:14920: checking for long configure:14944: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(75): remark #111: statement is unreachable return 0; ^ configure:14950: $? = 0 configure:14954: test -z || test ! -s conftest.err configure:14957: $? = 0 configure:14960: test -s conftest.o configure:14963: $? = 0 configure:14974: result: yes configure:14977: checking size of long configure:15296: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(67): remark #1418: external definition with no prior declaration long longval () { return (long) (sizeof (long)); } ^ conftest.cc(68): remark #1418: external definition with no prior declaration unsigned long ulongval () { return (long) (sizeof (long)); } ^ configure:15299: $? = 0 configure:15301: ./conftest configure:15304: $? = 0 configure:15327: result: 4 configure:15334: checking for size_t configure:15358: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(76): remark #111: statement is unreachable return 0; ^ configure:15364: $? = 0 configure:15368: test -z || test ! -s conftest.err configure:15371: $? = 0 configure:15374: test -s conftest.o configure:15377: $? = 0 configure:15388: result: yes configure:15391: checking size of size_t configure:15710: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(68): remark #1418: external definition with no prior declaration long longval () { return (long) (sizeof (size_t)); } ^ conftest.cc(69): remark #1418: external definition with no prior declaration unsigned long ulongval () { return (long) (sizeof (size_t)); } ^ configure:15713: $? = 0 configure:15715: ./conftest configure:15718: $? = 0 configure:15741: result: 4 configure:15748: checking for void* configure:15772: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(77): remark #111: statement is unreachable return 0; ^ configure:15778: $? = 0 configure:15782: test -z || test ! -s conftest.err configure:15785: $? = 0 configure:15788: test -s conftest.o configure:15791: $? = 0 configure:15802: result: yes configure:15805: checking size of void* configure:16124: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(69): remark #1418: external definition with no prior declaration long longval () { return (long) (sizeof (void*)); } ^ conftest.cc(70): remark #1418: external definition with no prior declaration unsigned long ulongval () { return (long) (sizeof (void*)); } ^ configure:16127: $? = 0 configure:16129: ./conftest configure:16132: $? = 0 configure:16155: result: 4 configure:16165: checking for 32-bit int configure:16181: result: int configure:16190: checking for inline configure:16211: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:16217: $? = 0 configure:16221: test -z || test ! -s conftest.err configure:16224: $? = 0 configure:16227: test -s conftest.o configure:16230: $? = 0 configure:16242: result: inline configure:16261: checking whether time.h and sys/time.h may both be included configure:16286: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:16292: $? = 0 configure:16296: test -z || test ! -s conftest.err configure:16299: $? = 0 configure:16302: test -s conftest.o configure:16305: $? = 0 configure:16316: result: yes configure:16342: checking sys/time.h usability configure:16354: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:16360: $? = 0 configure:16364: test -z || test ! -s conftest.err configure:16367: $? = 0 configure:16370: test -s conftest.o configure:16373: $? = 0 configure:16383: result: yes configure:16387: checking sys/time.h presence configure:16397: icpc -E conftest.cc configure:16403: $? = 0 configure:16423: result: yes configure:16458: checking for sys/time.h configure:16465: result: yes configure:16342: checking c_asm.h usability configure:16354: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(73): catastrophic error: could not open source file "c_asm.h" #include ^ compilation aborted for conftest.cc (code 4) configure:16360: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:16383: result: no configure:16387: checking c_asm.h presence configure:16397: icpc -E conftest.cc conftest.cc(39): catastrophic error: could not open source file "c_asm.h" #include ^ configure:16403: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #include configure:16423: result: no configure:16458: checking for c_asm.h configure:16465: result: no configure:16342: checking intrinsics.h usability configure:16354: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(73): catastrophic error: could not open source file "intrinsics.h" #include ^ compilation aborted for conftest.cc (code 4) configure:16360: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:16383: result: no configure:16387: checking intrinsics.h presence configure:16397: icpc -E conftest.cc conftest.cc(39): catastrophic error: could not open source file "intrinsics.h" #include ^ configure:16403: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #include configure:16423: result: no configure:16458: checking for intrinsics.h configure:16465: result: no configure:16479: checking for hrtime_t configure:16506: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(46): error: identifier "hrtime_t" is undefined if ((hrtime_t *) 0) ^ conftest.cc(46): error: expected an expression if ((hrtime_t *) 0) ^ conftest.cc(46): error: expected a ")" if ((hrtime_t *) 0) ^ compilation aborted for conftest.cc (code 2) configure:16512: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #if HAVE_SYS_TIME_H | #include | #endif | | int | main () | { | if ((hrtime_t *) 0) | return 0; | if (sizeof (hrtime_t)) | return 0; | ; | return 0; | } configure:16536: result: no configure:16552: checking for gethrtime configure:16609: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(63): remark #1419: external declaration in primary source file char gethrtime (); ^ conftest.cc(70): remark #1418: external definition with no prior declaration char (*f) () = gethrtime; ^ conftest.cc(81): remark #111: statement is unreachable return 0; ^ /tmp/icpcovIwMj.o(.text+0x25): In function `main': : undefined reference to `gethrtime' /tmp/icpcovIwMj.o(.data+0x0): undefined reference to `gethrtime' configure:16615: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | /* Define gethrtime to an innocuous variant, in case declares gethrtime. | For example, HP-UX 11i declares gettimeofday. */ | #define gethrtime innocuous_gethrtime | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char gethrtime (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef gethrtime | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char gethrtime (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_gethrtime) || defined (__stub___gethrtime) | choke me | #else | char (*f) () = gethrtime; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != gethrtime; | ; | return 0; | } configure:16640: result: no configure:16552: checking for clock_gettime configure:16609: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(63): remark #1419: external declaration in primary source file char clock_gettime (); ^ conftest.cc(70): remark #1418: external definition with no prior declaration char (*f) () = clock_gettime; ^ conftest.cc(81): remark #111: statement is unreachable return 0; ^ /tmp/icpcuHBKrF.o(.text+0x25): In function `main': : undefined reference to `clock_gettime' /tmp/icpcuHBKrF.o(.data+0x0): undefined reference to `clock_gettime' configure:16615: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | /* Define clock_gettime to an innocuous variant, in case declares clock_gettime. | For example, HP-UX 11i declares gettimeofday. */ | #define clock_gettime innocuous_clock_gettime | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char clock_gettime (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef clock_gettime | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char clock_gettime (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_clock_gettime) || defined (__stub___clock_gettime) | choke me | #else | char (*f) () = clock_gettime; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != clock_gettime; | ; | return 0; | } configure:16640: result: no configure:16652: checking for read_real_time configure:16684: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(54): error: identifier "timebasestruct_t" is undefined timebasestruct_t t; ^ conftest.cc(55): error: identifier "TIMEBASE_SZ" is undefined read_real_time(&t, TIMEBASE_SZ); ^ conftest.cc(55): error: identifier "read_real_time" is undefined read_real_time(&t, TIMEBASE_SZ); ^ compilation aborted for conftest.cc (code 2) configure:16690: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #if TIME_WITH_SYS_TIME | # include | # include | #else | # if HAVE_SYS_TIME_H | # include | # else | # include | # endif | #endif | | int | main () | { | | timebasestruct_t t; | read_real_time(&t, TIMEBASE_SZ); | | ; | return 0; | } configure:16717: result: no configure:16720: checking for time_base_to_time configure:16752: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(54): error: identifier "timebasestruct_t" is undefined timebasestruct_t t; ^ conftest.cc(55): error: identifier "TIMEBASE_SZ" is undefined time_base_to_time(&t, TIMEBASE_SZ); ^ conftest.cc(55): error: identifier "time_base_to_time" is undefined time_base_to_time(&t, TIMEBASE_SZ); ^ compilation aborted for conftest.cc (code 2) configure:16758: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #if TIME_WITH_SYS_TIME | # include | # include | #else | # if HAVE_SYS_TIME_H | # include | # else | # include | # endif | #endif | | int | main () | { | | timebasestruct_t t; | time_base_to_time(&t, TIMEBASE_SZ); | | ; | return 0; | } configure:16785: result: no configure:16795: checking for _rtc intrinsic configure:16816: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(45): error: identifier "_rtc" is undefined _rtc() ^ compilation aborted for conftest.cc (code 2) configure:16822: $? = 2 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | /* end confdefs.h. */ | #ifdef HAVE_INTRINSICS_H | #include | #endif | int | main () | { | _rtc() | ; | return 0; | } configure:16850: result: no configure:16906: checking for dsyevr_ in -lSimTKlapack configure:16936: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/afs/nd.edu/user25/tcickovs/Research/LAPACK/include conftest.cc -lSimTKlapack -L/afs/nd.edu/user25/tcickovs/Research/LAPACK/lib >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(46): remark #1419: external declaration in primary source file char dsyevr_ (); ^ configure:16942: $? = 0 configure:16946: test -z || test ! -s conftest.err configure:16949: $? = 0 configure:16952: test -s conftest configure:16955: $? = 0 configure:16968: result: yes configure:16991: checking SimTKlapack.h usability configure:17003: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/afs/nd.edu/user25/tcickovs/Research/LAPACK/include conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:17009: $? = 0 configure:17013: test -z || test ! -s conftest.err configure:17016: $? = 0 configure:17019: test -s conftest.o configure:17022: $? = 0 configure:17032: result: yes configure:17036: checking SimTKlapack.h presence configure:17046: icpc -E -I/afs/nd.edu/user25/tcickovs/Research/LAPACK/include conftest.cc configure:17052: $? = 0 configure:17072: result: yes configure:17107: checking for SimTKlapack.h configure:17114: result: yes configure:17267: checking for zfftm1di in -lcomplib.sgimath configure:17297: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lcomplib.sgimath -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char zfftm1di (); ^ ld: cannot find -lcomplib.sgimath configure:17303: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char zfftm1di (); | int | main () | { | zfftm1di (); | ; | return 0; | } configure:17329: result: no configure:17343: checking for zfftm1d in -lcomplib.sgimath configure:17373: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lcomplib.sgimath -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char zfftm1d (); ^ ld: cannot find -lcomplib.sgimath configure:17379: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char zfftm1d (); | int | main () | { | zfftm1d (); | ; | return 0; | } configure:17405: result: no configure:17419: checking for zfft2di in -lcomplib.sgimath configure:17449: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lcomplib.sgimath -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char zfft2di (); ^ ld: cannot find -lcomplib.sgimath configure:17455: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char zfft2di (); | int | main () | { | zfft2di (); | ; | return 0; | } configure:17481: result: no configure:17495: checking for zfft2d in -lcomplib.sgimath configure:17525: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lcomplib.sgimath -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char zfft2d (); ^ ld: cannot find -lcomplib.sgimath configure:17531: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char zfft2d (); | int | main () | { | zfft2d (); | ; | return 0; | } configure:17557: result: no configure:17571: checking for zfft3di in -lcomplib.sgimath configure:17601: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lcomplib.sgimath -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char zfft3di (); ^ ld: cannot find -lcomplib.sgimath configure:17607: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char zfft3di (); | int | main () | { | zfft3di (); | ; | return 0; | } configure:17633: result: no configure:17647: checking for zfft3d in -lcomplib.sgimath configure:17677: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lcomplib.sgimath -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char zfft3d (); ^ ld: cannot find -lcomplib.sgimath configure:17683: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char zfft3d (); | int | main () | { | zfft3d (); | ; | return 0; | } configure:17709: result: no configure:17732: checking fft.h usability configure:17744: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(74): catastrophic error: could not open source file "fft.h" #include ^ compilation aborted for conftest.cc (code 4) configure:17750: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:17773: result: no configure:17777: checking fft.h presence configure:17787: icpc -E conftest.cc conftest.cc(40): catastrophic error: could not open source file "fft.h" #include ^ configure:17793: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include configure:17813: result: no configure:17848: checking for fft.h configure:17855: result: no configure:17877: checking for dcft in -lessl configure:17907: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lessl -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char dcft (); ^ ld: cannot find -lessl configure:17913: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char dcft (); | int | main () | { | dcft (); | ; | return 0; | } configure:17939: result: no configure:17962: checking essl.h usability configure:17974: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(74): catastrophic error: could not open source file "essl.h" #include ^ compilation aborted for conftest.cc (code 4) configure:17980: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:18003: result: no configure:18007: checking essl.h presence configure:18017: icpc -E conftest.cc conftest.cc(40): catastrophic error: could not open source file "essl.h" #include ^ configure:18023: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include configure:18043: result: no configure:18078: checking for essl.h configure:18085: result: no configure:18122: checking for fftw3d_mpi_create_plan in -lfftw_mpi configure:18152: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW2_MPI -DHAVE_FFT -I conftest.cc -lfftw_mpi -L -lfftw_mpi -lfftw >&5 ld: cannot find -lfftw_mpi configure:18158: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char fftw3d_mpi_create_plan (); | int | main () | { | fftw3d_mpi_create_plan (); | ; | return 0; | } configure:18184: result: no configure:18198: checking for fftw3d_create_plan in -lfftw configure:18228: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW2_MPI -DHAVE_FFT -I conftest.cc -lfftw -L -lfftw_mpi -lfftw >&5 ld: cannot find -lfftw configure:18234: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char fftw3d_create_plan (); | int | main () | { | fftw3d_create_plan (); | ; | return 0; | } configure:18260: result: no configure:18283: checking fftw_mpi.h usability configure:18295: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW2_MPI -DHAVE_FFT -I conftest.cc >&5 icpc: Command line error: no files specified; for help type "icpc -help" configure:18301: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:18324: result: no configure:18328: checking fftw_mpi.h presence configure:18338: icpc -E -DHAVE_FFT_FFTW2_MPI -DHAVE_FFT -I conftest.cc icpc: Command line error: no files specified; for help type "icpc -help" configure:18344: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include configure:18364: result: no configure:18399: checking for fftw_mpi.h configure:18406: result: no configure:18427: checking fftw.h usability configure:18439: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW2_MPI -DHAVE_FFT -I conftest.cc >&5 icpc: Command line error: no files specified; for help type "icpc -help" configure:18445: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:18468: result: no configure:18472: checking fftw.h presence configure:18482: icpc -E -DHAVE_FFT_FFTW2_MPI -DHAVE_FFT -I conftest.cc icpc: Command line error: no files specified; for help type "icpc -help" configure:18488: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include configure:18508: result: no configure:18543: checking for fftw.h configure:18550: result: no configure:18586: checking for fftw_plan_dft_3d in -lfftw3 configure:18616: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW3 -DHAVE_FFT -I conftest.cc -lfftw3 -L -lfftw3 >&5 ld: cannot find -lfftw3 configure:18622: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char fftw_plan_dft_3d (); | int | main () | { | fftw_plan_dft_3d (); | ; | return 0; | } configure:18648: result: no configure:18671: checking fftw3.h usability configure:18683: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW3 -DHAVE_FFT -I conftest.cc >&5 icpc: Command line error: no files specified; for help type "icpc -help" configure:18689: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:18712: result: no configure:18716: checking fftw3.h presence configure:18726: icpc -E -DHAVE_FFT_FFTW3 -DHAVE_FFT -I conftest.cc icpc: Command line error: no files specified; for help type "icpc -help" configure:18732: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include configure:18752: result: no configure:18787: checking for fftw3.h configure:18794: result: no configure:18829: checking for fftw3d_create_plan in -lfftw configure:18859: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW2 -DHAVE_FFT -I conftest.cc -lfftw -L -lfftw >&5 ld: cannot find -lfftw configure:18865: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char fftw3d_create_plan (); | int | main () | { | fftw3d_create_plan (); | ; | return 0; | } configure:18891: result: no configure:18914: checking fftw.h usability configure:18926: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -DHAVE_FFT_FFTW2 -DHAVE_FFT -I conftest.cc >&5 icpc: Command line error: no files specified; for help type "icpc -help" configure:18932: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:18955: result: no configure:18959: checking fftw.h presence configure:18969: icpc -E -DHAVE_FFT_FFTW2 -DHAVE_FFT -I conftest.cc icpc: Command line error: no files specified; for help type "icpc -help" configure:18975: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | /* end confdefs.h. */ | #include configure:18995: result: no configure:19030: checking for fftw.h configure:19037: result: no configure:19051: checking FFT SGI complib.sgimath configure:19054: result: no configure:19060: checking FFT ESSL configure:19063: result: no configure:19069: checking FFT FFTW3 configure:19072: result: no configure:19078: checking FFT FFTW2 configure:19081: result: no configure:19087: checking FFT FFTW2 MPI configure:19090: result: no configure:19185: checking for compress in -lz configure:19215: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lz -lm -lnsl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char compress (); ^ configure:19221: $? = 0 configure:19225: test -z || test ! -s conftest.err configure:19228: $? = 0 configure:19231: test -s conftest configure:19234: $? = 0 configure:19247: result: yes configure:19263: checking png.h usability configure:19275: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ configure:19281: $? = 0 configure:19285: test -z || test ! -s conftest.err configure:19288: $? = 0 configure:19291: test -s conftest.o configure:19294: $? = 0 configure:19304: result: yes configure:19308: checking png.h presence configure:19318: icpc -E conftest.cc configure:19324: $? = 0 configure:19344: result: yes configure:19379: checking for png.h configure:19386: result: yes configure:19398: checking for png_create_write_struct in -lpng configure:19428: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lpng -lm -lnsl -lz >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(47): remark #1419: external declaration in primary source file char png_create_write_struct (); ^ configure:19434: $? = 0 configure:19438: test -z || test ! -s conftest.err configure:19441: $? = 0 configure:19444: test -s conftest configure:19447: $? = 0 configure:19460: result: yes configure:19489: checking for pthread_cancel in -lpthread configure:19519: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lpthread -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(48): remark #1419: external declaration in primary source file char pthread_cancel (); ^ configure:19525: $? = 0 configure:19529: test -z || test ! -s conftest.err configure:19532: $? = 0 configure:19535: test -s conftest configure:19538: $? = 0 configure:19551: result: yes configure:19557: checking for dlopen in -ldl configure:19587: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -ldl -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(48): remark #1419: external declaration in primary source file char dlopen (); ^ configure:19593: $? = 0 configure:19597: test -z || test ! -s conftest.err configure:19600: $? = 0 configure:19603: test -s conftest configure:19606: $? = 0 configure:19619: result: yes configure:19632: checking for XmuAllStandardColormaps in -lXmu configure:19662: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(48): remark #1419: external declaration in primary source file char XmuAllStandardColormaps (); ^ configure:19668: $? = 0 configure:19672: test -z || test ! -s conftest.err configure:19675: $? = 0 configure:19678: test -s conftest configure:19681: $? = 0 configure:19694: result: yes configure:19708: checking for XtAppInitialize in -lXt configure:19738: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lXt -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(49): remark #1419: external declaration in primary source file char XtAppInitialize (); ^ configure:19744: $? = 0 configure:19748: test -z || test ! -s conftest.err configure:19751: $? = 0 configure:19754: test -s conftest configure:19757: $? = 0 configure:19770: result: yes configure:19784: checking for SmcOpenConnection in -lSM configure:19814: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lSM -lXt -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(50): remark #1419: external declaration in primary source file char SmcOpenConnection (); ^ configure:19820: $? = 0 configure:19824: test -z || test ! -s conftest.err configure:19827: $? = 0 configure:19830: test -s conftest configure:19833: $? = 0 configure:19846: result: yes configure:19860: checking for IceAcceptConnection in -lICE configure:19890: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lICE -lSM -lXt -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(51): remark #1419: external declaration in primary source file char IceAcceptConnection (); ^ configure:19896: $? = 0 configure:19900: test -z || test ! -s conftest.err configure:19903: $? = 0 configure:19906: test -s conftest configure:19909: $? = 0 configure:19922: result: yes configure:19936: checking for XextCreateExtension in -lXext configure:19966: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lXext -lICE -lSM -lXt -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(52): remark #1419: external declaration in primary source file char XextCreateExtension (); ^ configure:19972: $? = 0 configure:19976: test -z || test ! -s conftest.err configure:19979: $? = 0 configure:19982: test -s conftest configure:19985: $? = 0 configure:19998: result: yes configure:20012: checking for XOpenDisplay in -lX11 configure:20042: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lX11 -lXext -lICE -lSM -lXt -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(53): remark #1419: external declaration in primary source file char XOpenDisplay (); ^ configure:20048: $? = 0 configure:20052: test -z || test ! -s conftest.err configure:20055: $? = 0 configure:20058: test -s conftest configure:20061: $? = 0 configure:20074: result: yes configure:20088: checking for XOpenDevice in -lXi configure:20118: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg conftest.cc -lXi -lX11 -lXext -lICE -lSM -lXt -lXmu -L/usr/X11R6/lib -lm -lnsl -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(54): remark #1419: external declaration in primary source file char XOpenDevice (); ^ configure:20124: $? = 0 configure:20128: test -z || test ! -s conftest.err configure:20131: $? = 0 configure:20134: test -s conftest configure:20137: $? = 0 configure:20150: result: yes configure:20189: checking for pthread_cancel in -lpthread configure:20251: result: yes configure:20257: checking for dlopen in -ldl configure:20319: result: yes configure:20326: checking for glClear in -lGL configure:20356: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/usr/X11R6/include conftest.cc -lGL -lz -L/usr/X11R6/lib -lglut -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(55): remark #1419: external declaration in primary source file char glClear (); ^ ld: cannot find -lglut configure:20362: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char glClear (); | int | main () | { | glClear (); | ; | return 0; | } configure:20388: result: no configure:20402: checking for gluLookAt in -lGLU configure:20432: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/usr/X11R6/include conftest.cc -lGLU -lz -L/usr/X11R6/lib -lglut -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(55): remark #1419: external declaration in primary source file char gluLookAt (); ^ ld: cannot find -lglut configure:20438: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char gluLookAt (); | int | main () | { | gluLookAt (); | ; | return 0; | } configure:20464: result: no configure:20478: checking for glutMainLoop in -lglut configure:20508: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/usr/X11R6/include conftest.cc -lglut -lz -L/usr/X11R6/lib -lglut -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(55): remark #1419: external declaration in primary source file char glutMainLoop (); ^ ld: cannot find -lglut configure:20514: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char glutMainLoop (); | int | main () | { | glutMainLoop (); | ; | return 0; | } configure:20540: result: no configure:20563: checking GL/glut.h usability configure:20575: icpc -c -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/usr/X11R6/include conftest.cc >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(82): catastrophic error: could not open source file "GL/glut.h" #include ^ compilation aborted for conftest.cc (code 4) configure:20581: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:20604: result: no configure:20608: checking GL/glut.h presence configure:20618: icpc -E -I/usr/X11R6/include conftest.cc conftest.cc(48): catastrophic error: could not open source file "GL/glut.h" #include ^ configure:20624: $? = 4 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | #include configure:20644: result: no configure:20679: checking for GL/glut.h configure:20686: result: no configure:20697: checking for jpeg_CreateDecompress in -ljpeg configure:20727: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/usr/X11R6/include conftest.cc -ljpeg -lz -L/usr/X11R6/lib -lglut -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(55): remark #1419: external declaration in primary source file char jpeg_CreateDecompress (); ^ ld: cannot find -lglut configure:20733: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char jpeg_CreateDecompress (); | int | main () | { | jpeg_CreateDecompress (); | ; | return 0; | } configure:20759: result: no configure:20765: checking for TIFFSetErrorHandler in -ltiff configure:20795: icpc -o conftest -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg -I/usr/X11R6/include conftest.cc -ltiff -lz -L/usr/X11R6/lib -lglut -lGLU -lGL -lXmu -lXt -lSM -lICE -lXext -lX11 -lXi -lXext -lX11 -lpthread -ldl >&5 conftest.cc(16): remark #1419: external declaration in primary source file extern "C" void exit (int) throw (); ^ conftest.cc(55): remark #1419: external declaration in primary source file char TIFFSetErrorHandler (); ^ ld: cannot find -lglut configure:20801: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "protomol" | #define PACKAGE_TARNAME "protomol" | #define PACKAGE_VERSION "2.0.4" | #define PACKAGE_STRING "protomol 2.0.4" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #define PACKAGE "protomol" | #define VERSION "2.0.4" | #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" | #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." | #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" | #define PACKAGE_WHOAMI "tcickovs" | #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" | #ifdef __cplusplus | extern "C" void exit (int) throw (); | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SOCKLEN_TYPE socklen_t | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_SIZE_T 4 | #define SIZEOF_VOIDP 4 | #define INT32_TYPE int | #define TIME_WITH_SYS_TIME 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_LIBSIMTKLAPACK 1 | #define HAVE_LIBPNG 1 | #define HAVE_LIBXMU 1 | #define HAVE_LIBXT 1 | #define HAVE_LIBSM 1 | #define HAVE_LIBICE 1 | #define HAVE_LIBXEXT 1 | #define HAVE_LIBX11 1 | #define HAVE_LIBXI 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char TIFFSetErrorHandler (); | int | main () | { | TIFFSetErrorHandler (); | ; | return 0; | } configure:20827: result: no configure:20834: checking found GLUT configure:20837: result: no configure:20942: checking for makedepend configure:20958: found /usr/X11R6/bin/makedepend configure:20968: result: makedepend configure:21197: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by protomol config.status 2.0.4, which was generated by GNU Autoconf 2.59. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on manganese config.status:733: creating Makefile config.status:733: creating framework/Makefile config.status:733: creating framework/base/Makefile config.status:733: creating framework/io/Makefile config.status:733: creating framework/parallel/Makefile config.status:733: creating framework/topology/Makefile config.status:733: creating framework/forces/Makefile config.status:733: creating framework/imd/Makefile config.status:733: creating framework/integrators/Makefile config.status:733: creating framework/frontend/Makefile config.status:733: creating framework/factories/Makefile config.status:733: creating applications/Makefile config.status:733: creating applications/protomol-app/Makefile config.status:837: creating protomol_config.h config.status:1013: protomol_config.h is unchanged config.status:1193: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_func_clock_gettime=no ac_cv_func_connect=yes ac_cv_func_gethostbyname=yes ac_cv_func_gethrtime=no ac_cv_func_remove=yes ac_cv_func_shmat=yes ac_cv_have_x='have_x=yes ac_x_includes=/usr/X11R6/include ac_x_libraries=/usr/X11R6/lib' ac_cv_header_GL_glut_h=no ac_cv_header_SimTKlapack_h=yes ac_cv_header_c_asm_h=no ac_cv_header_essl_h=no ac_cv_header_fft_h=no ac_cv_header_fftw3_h=no ac_cv_header_fftw_h=no ac_cv_header_fftw_mpi_h=no ac_cv_header_intrinsics_h=no ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_png_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_lib_GLU_gluLookAt=no ac_cv_lib_GL_glClear=no ac_cv_lib_ICE_IceAcceptConnection=yes ac_cv_lib_ICE_IceConnectionNumber=yes ac_cv_lib_SM_SmcOpenConnection=yes ac_cv_lib_SimTKlapack_dsyevr_=yes ac_cv_lib_X11_XOpenDisplay=yes ac_cv_lib_Xext_XextCreateExtension=yes ac_cv_lib_Xi_XOpenDevice=yes ac_cv_lib_Xmu_XmuAllStandardColormaps_=yes ac_cv_lib_Xt_XtAppInitialize=yes ac_cv_lib_complib_sgimath_zfft2d=no ac_cv_lib_complib_sgimath_zfft2di=no ac_cv_lib_complib_sgimath_zfft3d=no ac_cv_lib_complib_sgimath_zfft3di=no ac_cv_lib_complib_sgimath_zfftm1d=no ac_cv_lib_complib_sgimath_zfftm1di=no ac_cv_lib_dl_dlopen=yes ac_cv_lib_essl_dcft=no ac_cv_lib_fftw3_fftw_plan_dft_3d=no ac_cv_lib_fftw_fftw3d_create_plan=no ac_cv_lib_fftw_mpi_fftw3d_mpi_create_plan=no ac_cv_lib_glut_glutMainLoop=no ac_cv_lib_jpeg_jpeg_CreateDecompress=no ac_cv_lib_png_png_create_write_struct=yes ac_cv_lib_pthread_pthread_cancel=yes ac_cv_lib_socket_socket=no ac_cv_lib_tiff_TIFFSetErrorHandler=no ac_cv_lib_z_compress=yes ac_cv_objext=o ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CXXCPP='icpc -E' ac_cv_prog_MAKEDEPEND=makedepend ac_cv_prog_ac_ct_CC=icpc ac_cv_prog_ac_ct_CXX=icpc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc=no ac_cv_prog_cxx_g=yes ac_cv_prog_egrep='grep -E' ac_cv_prog_make_make_set=yes ac_cv_sizeof_char=1 ac_cv_sizeof_int=4 ac_cv_sizeof_long=4 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=4 ac_cv_sizeof_voidp=4 ac_cv_type_char=yes ac_cv_type_hrtime_t=no ac_cv_type_int=yes ac_cv_type_long=yes ac_cv_type_short=yes ac_cv_type_size_t=yes ac_cv_type_voidp=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /afs/nd.edu/user25/tcickovs/Research/linprotomol/config/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /afs/nd.edu/user25/tcickovs/Research/linprotomol/config/missing --run tar' AR1='ar' AR2='ar cru' AUTOCONF='${SHELL} /afs/nd.edu/user25/tcickovs/Research/linprotomol/config/missing --run autoconf' AUTOHEADER='${SHELL} /afs/nd.edu/user25/tcickovs/Research/linprotomol/config/missing --run autoheader' AUTOMAKE='${SHELL} /afs/nd.edu/user25/tcickovs/Research/linprotomol/config/missing --run automake-1.9' AWK='gawk' CC='icpc' CCDEPMODE='depmode=none' CFLAGS='-Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg' CLEANFILES='-r *~' CPPFLAGS='' CXX='icpc' CXXCPP='icpc -E' CXXDEPMODE='depmode=none' CXXFLAGS='-Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DEPFLAGS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' EXEEXT='' FFT_CFLAGS='' FFT_LIBS='' GLUT_CFLAGS='' GLUT_LIBS='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' LAPACK_CFLAGS='-I/afs/nd.edu/user25/tcickovs/Research/LAPACK/include -DHAVE_LAPACK -DHAVE_SIMTK_LAPACK' LAPACK_LIBS='-L/afs/nd.edu/user25/tcickovs/Research/LAPACK/lib -lSimTKlapack' LDFLAGS='' LIBOBJS='' LIBS='-lm -lnsl' LTLIBOBJS='' LT_AGE='0' LT_CURRENT='' LT_RELEASE='2.0' LT_REVISION='0' MAKEDEPEND='makedepend' MAKEINFO='${SHELL} /afs/nd.edu/user25/tcickovs/Research/linprotomol/config/missing --run makeinfo' OBJEXT='o' PACKAGE='protomol' PACKAGE_BUGREPORT='protomol@cse.nd.edu' PACKAGE_NAME='protomol' PACKAGE_STRING='protomol 2.0.4' PACKAGE_TARNAME='protomol' PACKAGE_VERSION='2.0.4' PATH_SEPARATOR=':' PNG_LIBS='-lpng' PROTOMOL_MAJOR_VERSION='2' PROTOMOL_MINOR_VERSION='0' PROTOMOL_PATCH_LEVEL='4' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/sh' SOCKET_LIBS='' STRIP='' VERSION='2.0.4' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS=' -lSM -lICE' ac_ct_CC='icpc' ac_ct_CXX='icpc' ac_ct_RANLIB='ranlib' ac_ct_STRIP='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build_alias='' datadir='${prefix}/share' exec_prefix='${prefix}' host_alias='' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/afs/nd.edu/user25/tcickovs/Research/linprotomol/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' prefix='/usr/local' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define HAVE_INTTYPES_H 1 #define HAVE_LIBICE 1 #define HAVE_LIBPNG 1 #define HAVE_LIBSIMTKLAPACK 1 #define HAVE_LIBSM 1 #define HAVE_LIBX11 1 #define HAVE_LIBXEXT 1 #define HAVE_LIBXI 1 #define HAVE_LIBXMU 1 #define HAVE_LIBXT 1 #define HAVE_MEMORY_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define INT32_TYPE int #define PACKAGE "protomol" #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" #define PACKAGE_BUGREPORT "protomol@cse.nd.edu" #define PACKAGE_CITE "Please cite T. Matthey, T. Cickovski, S. S. Hampton, A. Ko, Q. Ma, M. Nyerges, T. Raeder,\nT. Slabach, and J. A. Izaguirre. ProtoMol: An object-oriented framework for prototyping\nnovel algorithms for molecular dynamics. ACM Trans. Math. Softw., 30(3):237­265, 2004." #define PACKAGE_COMPILER "icpc -Wall -wd810,383,981,279,444,1572 -O3 -ip -DNDEBUG -pg -pg" #define PACKAGE_COMPILER_VERSION "Intel(R) C++ Compiler for 32-bit applications, Version 8.1 Build 20050823Z Package ID: l_cc_pc_8.1.034\nCopyright (C) 1985-2005 Intel Corporation. All rights reserved.\nVersion 8.1 " #define PACKAGE_HOMEPAGE "http://protomol.sourceforge.net" #define PACKAGE_NAME "protomol" #define PACKAGE_STRING "protomol 2.0.4" #define PACKAGE_TARNAME "protomol" #define PACKAGE_UNAME "Linux manganese 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:27:17 EDT 2006 i686 i686 i386 GNU/Linux" #define PACKAGE_VERSION "2.0.4" #define PACKAGE_WHOAMI "tcickovs" #define SIZEOF_CHAR 1 #define SIZEOF_INT 4 #define SIZEOF_LONG 4 #define SIZEOF_SHORT 2 #define SIZEOF_SIZE_T 4 #define SIZEOF_VOIDP 4 #define SOCKLEN_TYPE socklen_t #define STDC_HEADERS 1 #define TIME_WITH_SYS_TIME 1 #define VERSION "2.0.4" #endif #ifdef __cplusplus extern "C" void exit (int) throw (); configure: exit 0