# # Optimized LennardJones and Coulomb # by combining LennardJones and real # part of Ewald. # firststep 0 numsteps 10 exclude scaled1-4 seed 1234 outputfreq 10 restartfreq 1000 posfile bpti.pdb psffile bpti.psf parfile bpti.par temperature 0 #allenergiesfile bpti.out.energy boundaryConditions periodic cellBasisVector1 63.0 0.0 0.0 cellBasisVector2 0.0 50.0 0.0 cellBasisVector3 0.0 0.0 50.0 cellOrigin 0.0 0.0 0.0 cellManager Cubic cellsize 5.5 Integrator { level 0 Leapfrog { timestep 1 force Improper force Dihedral force Bond force Angle Force time LennardJones CoulombEwaldReal -switchingFunction C2 -switchingFunction Cutoff -algorithm NonbondedCutoff -switchon 0.1 # C2 swf switch on -cutoff 10.0 # C2 swf cutoff -alpha 0.214783856053563 # Ewald splitting -cutoff 17.3054076649173 # cutoff swf cutoff -cutoff 17.3054076649173 # algorithm cutoff force time Coulomb -algorithm FullEwald -correction -reciprocal -accuracy 1e-6 } }