# # Optimized LennardJones and Coulomb # by combining LennardJones and direct # part of multi grid, where the direct part # uses a look-up-table. # firststep 0 numsteps 10 exclude scaled1-4 seed 1234 posfile bpti.pdb psffile bpti.psf parfile bpti.par temperature 0 outputfreq 10 #allenergiesfile bpti.out.energy boundaryConditions Normal cellBasisVector1 63.0 0.0 0.0 cellBasisVector2 0.0 50.0 0.0 cellBasisVector3 0.0 0.0 50.0 cellOrigin 0.0 0.0 0.0 cellManager Cubic cellsize 5 Integrator { level 0 Leapfrog { timestep 1 force Improper force Dihedral force Bond force Angle force time LennardJones CoulombMultiGridDirectTable -switchingFunction C2 -kernel C3 -switchingFunction Cutoff -algorithm NonbondedCutoff -switchon 0.1 -cutoff 10.0 -s 10 force time Coulomb -algorithm MultiGrid -interpolation Hermite -kernel C3 -smooth -correction -levels 2 -s 10 -order 6 -ratio 2 -h 3 3 3 -origin 0 0 0 } }