firststep 0 numsteps 2000 # seed 1234 posfile examples/argon_400/argon.pdb velfile examples/argon_400/argon.vel.pdb psffile examples/argon_400/argon.psf parfile examples/argon_400/argon.par # temperature 300.0 usecharmm28parfile yes #outputfreq 1 #allenergiesfile argon.out.energies.lf boundaryConditions Periodic cellManager Cubic cellsize 6.5 #Integrator { # level 0 Leapfrog { # timestep 1 # force Improper, # Dihedral, # Bond, # Angle # force LennardJones # -algorithm NonbondedSimpleFull # -algorithm NonbondedCutoff # -switchingFunction C2 # -switchon 0.1 # -cutoff 6.5 # force Coulomb # -algorithm NonbondedCutoff # -switchingFunction C1 # -cutoff 6.5 # } #}