debug 0 numsteps 10 firststep 0 seed 7536031 posfile bpti.pdb psffile bpti.psf parfile bpti.par temperature 300 outputfreq 1 allenergiesfile bpti.out.energies.shmc boundaryConditions Periodic # cellBasisVector1 64.32 0 0 # cellBasisVector2 0 51.167 0 # cellBasisVector3 0 0 51.272 cellManager Cubic cellsize 4 # removeLinearMomentum 1 # removeAngularMomentum 1 shadowEnergy true Integrator { level 1 ShadowHMC { temperature 300 cyclelength 25 order 8 c 0 } level 0 Leapfrog { timestep 0.5 force Improper force Dihedral force Bond force Angle force Coulomb -algorithm NonbondedSimpleFull force LennardJones -algorithm NonbondedSimpleFull } }