firststep 0 numsteps 10 seed 1234 posfile examples/bpti_water_14281/bpti.pdb psffile examples/bpti_water_14281/bpti.psf parfile examples/bpti_water_14281/bpti.par temperature 0 outputfreq 10 #allenergiesfile bpti.out.energy boundaryConditions periodic cellBasisVector1 63.0 0.0 0.0 cellBasisVector2 0.0 50.0 0.0 cellBasisVector3 0.0 0.0 50.0 cellOrigin 0.0 0.0 0.0 cellManager Cubic cellsize 5.0 #Integrator { # level 0 Leapfrog { # timestep 1 # force Improper # force Dihedral # force Bond # force Angle # force LennardJones Coulomb # -switchingFunction C2 # -switchingFunction Shift # -algorithm NonbondedCutoff # -switchon 1.0 # -cutoff 10.0 # # } #}