firststep 0 numsteps 10 seed 1234 posfile examples/bpti_water_14281/bpti.pdb psffile examples/bpti_water_14281/bpti.psf parfile examples/bpti_water_14281/bpti.par temperature 0 usecharmm28parfile no #outputfreq 10 #allenergiesfile bpti.out.energy boundaryConditions Vacuum cellBasisVector1 63.0 0.0 0.0 cellBasisVector2 0.0 50.0 0.0 cellBasisVector3 0.0 0.0 50.0 cellOrigin 0.0 0.0 0.0 cellManager Cubic cellsize 5 #Integrator { # level 0 Leapfrog { # timestep 1 # force Improper # force Dihedral # force Bond # force Angle # force LennardJones # -switchingFunction C2 # -algorithm NonbondedCutoff # -switchon 0.1 # -cutoff 10.0 # force compare time Coulomb -algorithm MultiGrid -interpolation Hermite -kernel C3 # -levels 2 # -s 10 # -order 6 # -ratio 2 # -h 3 3 3 # -origin 0 0 0 # force compare time Coulomb -algorithm NonbondedSimpleFull # } #}