firststep 0
numsteps  10

# seed 1234

exclude 1-4
posfile examples/decalanine_66/alanine.pdb
psffile examples/decalanine_66/alanine.psf
parfile examples/decalanine_66/alanine.par
temperature 300 

#outputfreq 1
#allenergiesfile alanine.lf.energies
#diffusionFile   alanine.lf.diffusion

boundaryConditions Periodic

cellManager Cubic
cellsize    6.5

#Integrator {
#  level 0 Leapfrog {
#        timestep 1
#    force Improper 
#    force Dihedral 
#    force Bond 
#    force Angle 
#    force LennardJones Coulomb
#          -algorithm NonbondedCutoff
#          -switchingFunction C2
#          -switchingFunction Shift
#          -cutoff 6.5
#          -cutoff 6.5
#	  -switchon 0.1
#  }
#}