# Constraints commotion 1 exclude scaled1-4 seed 1234 posfile model/physical/examples/diAlanine/blockdialanine_eq.pdb psffile model/physical/examples/diAlanine/blockdialanine.psf parfile model/physical/examples/diAlanine/par_all27_prot_lipid.inp temperature 300 boundaryConditions Periodic cellManager Cubic cellsize 5