firststep 0 numsteps 1000 posfile examples/water_648/water648.ice.pos.pdb psffile examples/water_648/water648.spce.psf parfile examples/water_648/water648.spce.par temperature 260 seed 1234 #outputfreq 1 #allenergiesfile water648.out.ice.energy #diffusionFile water648.out.ice.diffusion #DCDFile water648.out.dcd #finXYZPosFile water648.out.ice.fin.pos.xyz boundaryConditions periodic cellbasisvector1 18.37 0 0 cellbasisvector2 0 18.37 0 cellbasisvector3 0 0 18.37 0 cellorigin 0 0 0 cellManager Cubic cellsize 5 #virialCalc yes #molVirialCalc yes #Integrator { # level 0 NPTVerlet { # timestep 1 # # target temperature # temperature 260.0 #K # target pressure # pressure 1.0 #bar # thermostat frequency [1/fs] # NOTE: The smaller omegaTo is, the less temperature control # omegaTo 0.005 # volume thermostat frequency [1/fs] # NOTE: The smaller omegaTv is, the less temperature control # omegaTv 0.002 # barostat time period [fs] # NOTE: The larger tauP is, the less pressure control # tauP 500.0 # force Bond # force Angle # force LennardJones # -switchingFunction C2 # -algorithm NonbondedCutoff # -switchon 8.0 # -cutoff 10 # force CoulombEwald # } #}