| ATOM-NAME-IS-ANY | -7 | 4 | 1 | 9 | 5 | 2 |
| ATOM-NAME-IS-C | -6 | -11 | 2 | 7 | 4 | 0 |
| ATOM-NAME-IS-N | -2 | -7 | -8 | 9 | 3 | 1 |
| ATOM-NAME-IS-O | -4 | 11 | 4 | 5 | 3 | 8 |
| ATOM-NAME-IS-S | -1 | -1 | -2 | -1 | -1 | 1 |
| ATOM-NAME-IS-OTHER | 0 | -1 | 0 | 3 | 1 | 1 |
| HYDROXYL | -1 | 2 | -1 | -1 | 1 | 2 |
| AMIDE | -2 | -7 | -7 | 9 | 3 | 1 |
| AMINE | -1 | -2 | -3 | -2 | -1 | 0 |
| CARBONYL | -4 | 10 | 1 | 2 | 3 | 8 |
| RING-SYSTEM | -2 | -3 | -5 | -3 | -1 | 1 |
| PEPTIDE | -5 | 1 | -4 | 8 | 5 | 3 |
| VDW-VOLUME | -7 | -4 | -1 | 9 | 5 | 1 |
| CHARGE | -2 | 10 | 13 | 7 | 1 | 1 |
| NEG-CHARGE | -2 | 11 | 13 | 9 | 1 | 2 |
| POS-CHARGE | -1 | -2 | -2 | 1 | 0 | -1 |
| CHARGE-WITH-HIS | -2 | 10 | 12 | 7 | 1 | 1 |
| HYDROPHOBICITY | 1 | -10 | -4 | -7 | -3 | -7 |
| MOBILITY | -5 | 5 | 6 | 3 | 0 | 1 |
| SOLVENT-ACCESSIBILITY | -6 | -1 | -3 | 3 | 1 | -1 |
| RESIDUE_NAME_IS_ALA | -2 | -1 | -2 | -1 | -1 | -1 |
| RESIDUE_NAME_IS_ARG | -1 | -1 | -2 | -1 | -2 | -2 |
| RESIDUE_NAME_IS_ASN | -2 | 3 | 4 | 5 | 4 | 3 |
| RESIDUE_NAME_IS_ASP | -1 | 11 | 12 | 12 | 10 | 5 |
| RESIDUE_NAME_IS_CYS | -1 | -1 | -1 | 0 | 1 | 2 |
| RESIDUE_NAME_IS_GLN | -1 | 0 | 0 | 1 | 1 | 1 |
| RESIDUE_NAME_IS_GLU | -2 | 5 | 5 | 4 | 4 | 4 |
| RESIDUE_NAME_IS_GLY | -1 | 2 | 1 | 4 | 3 | 2 |
| RESIDUE_NAME_IS_HIS | -1 | 0 | -1 | 0 | 2 | 2 |
| RESIDUE_NAME_IS_ILE | -2 | 0 | -1 | 2 | 1 | 0 |
| RESIDUE_NAME_IS_LEU | -2 | -3 | -4 | -2 | -1 | 0 |
| RESIDUE_NAME_IS_LYS | -1 | -1 | -3 | -1 | -1 | -1 |
| RESIDUE_NAME_IS_MET | 0 | -1 | -1 | -1 | 0 | 0 |
| RESIDUE_NAME_IS_PHE | -1 | 0 | -2 | -1 | 0 | 1 |
| RESIDUE_NAME_IS_PRO | -1 | -2 | -3 | 0 | 0 | 1 |
| RESIDUE_NAME_IS_SER | -1 | 0 | -1 | 2 | 2 | 3 |
| RESIDUE_NAME_IS_THR | -1 | 1 | 0 | 0 | 0 | 1 |
| RESIDUE_NAME_IS_TRP | -1 | -1 | -2 | 0 | 0 | 1 |
| RESIDUE_NAME_IS_TYR | -2 | 0 | -1 | -1 | -1 | 0 |
| RESIDUE_NAME_IS_VAL | -1 | -1 | -3 | -1 | -3 | -2 |
| RESIDUE_NAME_IS_HOH | -2 | 5 | 0 | 2 | -2 | 2 |
| RESIDUE_NAME_IS_OTHER | -1 | 1 | 1 | 2 | 1 | 1 |
| RESIDUE_CLASS1_IS_HYDROPHOBIC | -4 | -3 | -6 | -1 | 0 | -1 |
| RESIDUE_CLASS1_IS_CHARGED | -3 | 9 | 9 | 9 | 7 | 3 |
| RESIDUE_CLASS1_IS_POLAR | -4 | 0 | -1 | 4 | 3 | 3 |
| RESIDUE_CLASS1_IS_UNKNOWN | -3 | 5 | 1 | 4 | 2 | 2 |
| RESIDUE_CLASS2_IS_NONPOLAR | -4 | -3 | -6 | -1 | 0 | -1 |
| RESIDUE_CLASS2_IS_POLAR | -4 | 2 | 0 | 5 | 4 | 2 |
| RESIDUE_CLASS2_IS_BASIC | -2 | -1 | -4 | -1 | -1 | -1 |
| RESIDUE_CLASS2_IS_ACIDIC | -2 | 10 | 11 | 11 | 10 | 6 |
| RESIDUE_CLASS2_IS_UNKNOWN | -2 | 5 | 0 | 2 | -1 | 2 |
| SECONDARY_STRUCTURE1_IS_3HELIX | -1 | 3 | 3 | 3 | 2 | 2 |
| SECONDARY_STRUCTURE1_IS_4HELIX | -3 | 0 | 1 | 0 | 0 | 0 |
| SECONDARY_STRUCTURE1_IS_5HELIX | 0 | 0 | 0 | 0 | 0 | 0 |
| SECONDARY_STRUCTURE1_IS_BRIDGE | -1 | 1 | 1 | 2 | 2 | 3 |
| SECONDARY_STRUCTURE1_IS_STRAND | -3 | 0 | -2 | -1 | -1 | -2 |
| SECONDARY_STRUCTURE1_IS_TURN | -3 | 3 | 1 | 3 | 3 | 2 |
| SECONDARY_STRUCTURE1_IS_BEND | -2 | 7 | 8 | 9 | 8 | 7 |
| SECONDARY_STRUCTURE1_IS_COIL | -2 | 5 | 4 | 7 | 6 | 5 |
| SECONDARY_STRUCTURE1_IS_HET | -2 | 5 | 0 | 2 | -1 | 2 |
| SECONDARY_STRUCTURE1_IS_UNKNOWN | 0 | 0 | 0 | 0 | 0 | 0 |
| SECONDARY_STRUCTURE2_IS_HELIX | -3 | 1 | 2 | 1 | 0 | 0 |
| SECONDARY_STRUCTURE2_IS_BETA | -5 | 3 | 2 | 6 | 4 | 2 |
| SECONDARY_STRUCTURE2_IS_COIL | -2 | 5 | 4 | 7 | 6 | 5 |
| SECONDARY_STRUCTURE2_IS_HET | -2 | 5 | 0 | 2 | -1 | 2 |
| SECONDARY_STRUCTURE2_IS_UNKNOWN | 0 | 0 | 0 | 0 | 0 | 0 |