| ATOM-NAME-IS-ANY | . | + | . | + | + | . |
| ATOM-NAME-IS-C | . | - | . | + | + | - |
| ATOM-NAME-IS-N | - | . | . | + | . | . |
| ATOM-NAME-IS-O | - | . | + | + | + | + |
| ATOM-NAME-IS-S | - | - | - | - | - | . |
| ATOM-NAME-IS-OTHER | . | - | . | + | . | . |
| HYDROXYL | - | . | - | - | . | . |
| AMIDE | - | . | . | + | . | . |
| AMINE | - | - | - | - | - | - |
| CARBONYL | - | . | . | . | . | + |
| RING-SYSTEM | - | - | - | - | - | . |
| PEPTIDE | - | . | - | + | + | + |
| VDW-VOLUME | . | - | - | + | + | . |
| CHARGE | - | . | . | + | . | . |
| NEG-CHARGE | - | . | . | + | . | . |
| POS-CHARGE | - | - | - | . | . | - |
| CHARGE-WITH-HIS | - | . | . | + | . | . |
| HYDROPHOBICITY | . | - | - | . | - | . |
| MOBILITY | - | + | + | + | - | . |
| SOLVENT-ACCESSIBILITY | . | - | - | . | . | - |
| RESIDUE_NAME_IS_ALA | - | - | - | - | - | - |
| RESIDUE_NAME_IS_ARG | - | - | - | - | - | - |
| RESIDUE_NAME_IS_ASN | - | . | + | + | + | . |
| RESIDUE_NAME_IS_ASP | - | . | . | . | . | + |
| RESIDUE_NAME_IS_CYS | - | - | - | . | . | . |
| RESIDUE_NAME_IS_GLN | - | . | . | . | . | . |
| RESIDUE_NAME_IS_GLU | - | + | + | + | + | + |
| RESIDUE_NAME_IS_GLY | - | . | . | + | + | . |
| RESIDUE_NAME_IS_HIS | - | - | - | - | . | . |
| RESIDUE_NAME_IS_ILE | - | . | - | . | . | - |
| RESIDUE_NAME_IS_LEU | - | - | - | - | - | - |
| RESIDUE_NAME_IS_LYS | - | - | - | - | - | - |
| RESIDUE_NAME_IS_MET | . | - | - | - | - | - |
| RESIDUE_NAME_IS_PHE | - | . | - | - | - | . |
| RESIDUE_NAME_IS_PRO | - | - | - | . | . | . |
| RESIDUE_NAME_IS_SER | - | - | - | . | . | . |
| RESIDUE_NAME_IS_THR | - | . | . | - | . | . |
| RESIDUE_NAME_IS_TRP | - | - | - | . | . | . |
| RESIDUE_NAME_IS_TYR | - | . | - | - | - | - |
| RESIDUE_NAME_IS_VAL | - | - | - | - | - | - |
| RESIDUE_NAME_IS_HOH | - | + | - | . | - | . |
| RESIDUE_NAME_IS_OTHER | - | . | . | . | . | . |
| RESIDUE_CLASS1_IS_HYDROPHOBIC | - | - | . | - | - | - |
| RESIDUE_CLASS1_IS_CHARGED | - | + | + | + | + | + |
| RESIDUE_CLASS1_IS_POLAR | - | . | - | + | + | . |
| RESIDUE_CLASS1_IS_UNKNOWN | - | + | . | + | . | . |
| RESIDUE_CLASS2_IS_NONPOLAR | - | - | . | - | - | - |
| RESIDUE_CLASS2_IS_POLAR | - | . | . | + | + | . |
| RESIDUE_CLASS2_IS_BASIC | - | - | - | - | - | - |
| RESIDUE_CLASS2_IS_ACIDIC | - | . | . | . | + | + |
| RESIDUE_CLASS2_IS_UNKNOWN | - | + | . | . | - | . |
| SECONDARY_STRUCTURE1_IS_3HELIX | - | . | . | . | . | . |
| SECONDARY_STRUCTURE1_IS_4HELIX | - | . | . | . | - | - |
| SECONDARY_STRUCTURE1_IS_5HELIX | . | . | . | . | . | . |
| SECONDARY_STRUCTURE1_IS_BRIDGE | - | . | . | . | . | . |
| SECONDARY_STRUCTURE1_IS_STRAND | - | - | - | - | - | - |
| SECONDARY_STRUCTURE1_IS_TURN | - | + | . | . | . | . |
| SECONDARY_STRUCTURE1_IS_BEND | - | + | + | + | + | + |
| SECONDARY_STRUCTURE1_IS_COIL | - | + | + | + | + | + |
| SECONDARY_STRUCTURE1_IS_HET | - | + | . | . | - | . |
| SECONDARY_STRUCTURE1_IS_UNKNOWN | . | . | . | . | . | . |
| SECONDARY_STRUCTURE2_IS_HELIX | - | . | . | . | . | - |
| SECONDARY_STRUCTURE2_IS_BETA | - | + | . | + | + | . |
| SECONDARY_STRUCTURE2_IS_COIL | - | + | + | + | + | + |
| SECONDARY_STRUCTURE2_IS_HET | - | + | . | . | - | . |
| SECONDARY_STRUCTURE2_IS_UNKNOWN | . | . | . | . | . | . |