Omar M. Gad, omar.m.gad@gmail.com, 07/13/2015
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This folder contains segmented images from MRI images for the Open Knee project. For more details on the project and this data, please refer to:

http://wiki.simtk.org/openknee/Specifications/ImageSegmentation?highlight=%28Specifications%29

Directories:

TBB - tibia 
PTB - patella
FMB - femur 
FBB - fibula 

Files:
**oks001-fmb-04.nii - MRI data in NIFTI format
**oks001-fmb-04-label.nrrd - Segmentation label

Specifications for segmentation of bones:
	Label1:
		ThresholdEffect: Threshold Range - mid 130 to mid 180 (Apply)
		RemoveIslandsEffect: Morphology Method
		SaveIslandsEffect: Select bone of interest
		Erode and SaveIslandsEffect: Repeated consecutively until areas of disinterest removed
	Label2:		
		Threshold Effect: Threshold Range - lower 40 to mid 110 (Apply)
		RemoveIslandsEffect: Morphology Method
		SaveIslandsEffect: Select bone of interest
		Erode and SaveIslandsEffect: Repeated consecutively until areas of disinterest removed
		PaintEffect: Manual segmentation to add/remove from label
	Combine Label1 and Label2:
		PaintEffect: Manual segmentation to add/remove from label