# this is pseudocode for new paradigm

# set up my FAH server representation
server = FAHserver( settings = settingsForServer )

# set up my projects -- could do several at once like this or just one per
# script. Maybe these could save and load themselves as well?

project1 = FAHProject( settings = project1settings )
project2 = FAHProject( settings = project2settings )

# now do some stuff on the projects ... generate lists of new gro files with
# this object. Do this through one of the following two objects:

msm = MSMbuilder( settings = msmConfiguration )
dbchooser = FAHdb( settings = dbSettings )

# get some gro files:
groFiles = dbchooser.generateGroFiles()

# add them to project:
project1.addRuns( groFiles )

# setup the tprs
server.SetupDataDirs()

# restart the server
server.restart()

# and run this script as often as necessary for model building and updating