#============================================================*
#               test domain atom bonds                       *
#============================================================*

# open pdb file
#--------------
database open name = neck  format = pdb  file = neck_xform.pdb 


# read molecule
#---------------
molecule read database = neck  name = m1

# create a some domains
#----------------------
domain create iq1 = C[760-788]
domain create iq1a = A

#domain iq1 bonds  atom_color = element  show = true
#domain iq1 bonds  atom_color = element  atoms = false show = true

domain iq1 bonds  atom_color = [ 1 0 0 ] bond_color = [ 1 0 0 ] \
                  atoms = true show = true

domain iq1 backbone color = [ 1 0 0 ]  width = 2


#domain iq1a bonds  atom_color = element  atoms = true show = true
#domain iq1a atoms color = element show = true
#domain iq1 atoms color = [ 0 1 0 ] show = true